Wall clock time and date at job start Fri Apr 10 2020 18:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46681 * 2 1 4 4 N 1.46901 * 109.46796 * 180.02562 * 3 2 1 5 5 C 1.47845 * 111.00338 * 56.83023 * 4 3 2 6 6 C 1.54909 * 104.79799 * 146.36339 * 5 4 3 7 7 C 1.55144 * 101.65208 * 322.93307 * 6 5 4 8 8 C 1.47437 * 111.00058 * 177.67389 * 4 3 2 9 9 H 1.09000 * 109.89237 * 117.16998 * 8 4 3 10 10 C 1.50709 * 109.89003 * 356.14603 * 8 4 3 11 11 O 1.21281 * 119.99584 * 300.63050 * 10 8 4 12 12 N 1.34771 * 120.00123 * 120.62499 * 10 8 4 13 13 C 1.46495 * 120.00063 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47065 * 180.02562 * 13 12 10 15 15 H 1.08993 * 112.91041 * 316.25565 * 14 13 12 16 16 C 1.53781 * 113.61121 * 87.51097 * 14 13 12 17 17 C 1.53787 * 87.08056 * 139.98108 * 16 14 13 18 18 H 1.09003 * 113.68708 * 220.00520 * 17 16 14 19 19 N 1.46495 * 113.61553 * 89.11643 * 17 16 14 20 20 C 1.36936 * 120.00262 * 107.50108 * 19 17 16 21 21 H 1.07997 * 119.99757 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99392 * 179.72355 * 22 20 19 24 24 Si 1.86798 * 119.99950 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46853 * 269.72133 * 24 22 20 26 26 H 1.48495 * 109.47174 * 29.72451 * 24 22 20 27 27 H 1.48500 * 109.46767 * 149.72600 * 24 22 20 28 28 C 1.53775 * 87.07814 * 334.56198 * 17 16 14 29 29 H 1.08995 * 109.47683 * 299.99978 * 1 2 3 30 30 H 1.09002 * 109.47551 * 60.00492 * 1 2 3 31 31 H 1.09001 * 109.47057 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46979 * 240.00144 * 2 1 3 33 33 H 1.08998 * 109.47094 * 119.99367 * 2 1 3 34 34 H 1.08990 * 109.47166 * 60.00104 * 3 2 1 35 35 H 1.08998 * 109.46839 * 299.99523 * 3 2 1 36 36 H 1.09000 * 110.37170 * 265.19604 * 5 4 3 37 37 H 1.09000 * 110.37164 * 27.53472 * 5 4 3 38 38 H 1.08998 * 110.98731 * 81.01820 * 6 5 4 39 39 H 1.09000 * 110.99011 * 204.79943 * 6 5 4 40 40 H 1.09000 * 110.70068 * 277.27067 * 7 6 5 41 41 H 1.08997 * 110.70639 * 154.03712 * 7 6 5 42 42 H 0.97003 * 120.00241 * 0.02562 * 12 10 8 43 43 H 1.09004 * 109.46774 * 60.01006 * 13 12 10 44 44 H 1.08998 * 109.47774 * 300.00702 * 13 12 10 45 45 H 1.08999 * 113.61810 * 25.42990 * 16 14 13 46 46 H 1.09005 * 113.60963 * 254.52292 * 16 14 13 47 47 H 0.97006 * 119.99942 * 287.49362 * 19 17 16 48 48 H 0.97006 * 119.99790 * 180.27402 * 23 22 20 49 49 H 1.09009 * 113.61079 * 139.98441 * 28 17 16 50 50 H 1.08995 * 113.61814 * 270.88372 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0383 0.6876 -1.1563 6 6 5.3441 1.4246 -1.5457 7 6 4.9552 2.9052 -1.2939 8 6 4.0372 2.8179 -0.0565 9 1 4.6075 3.0332 0.8472 10 6 2.9008 3.7987 -0.1910 11 8 2.1501 3.7301 -1.1411 12 7 2.7189 4.7517 0.7443 13 6 1.6146 5.7053 0.6132 14 6 1.6335 6.6735 1.7979 15 1 1.8090 6.1745 2.7509 16 6 2.5274 7.9044 1.5732 17 6 1.4312 8.7295 2.2679 18 1 1.2536 9.7000 1.8044 19 7 1.5928 8.8143 3.7214 20 6 1.9985 9.9883 4.2979 21 1 2.1997 10.8515 3.6810 22 6 2.1511 10.0687 5.6753 23 7 2.5463 11.1955 6.2288 24 14 1.8038 8.5752 6.7423 25 1 0.3773 8.5829 7.1552 26 1 2.0892 7.3388 5.9711 27 1 2.6686 8.6170 7.9487 28 6 0.4396 7.6426 1.8205 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 4.2544 -0.3417 -0.8703 37 1 3.3281 0.7117 -1.9828 38 1 6.1697 1.1228 -0.9013 39 1 5.5888 1.2574 -2.5946 40 1 4.4134 3.3119 -2.1478 41 1 5.8395 3.5043 -1.0763 42 1 3.3196 4.8067 1.5040 43 1 0.6679 5.1653 0.6001 44 1 1.7264 6.2655 -0.3151 45 1 2.6650 8.1582 0.5221 46 1 3.4653 7.8700 2.1277 47 1 1.4123 8.0388 4.2755 48 1 2.6568 11.2506 7.1910 49 1 -0.3081 7.3966 2.5747 50 1 0.0064 7.8247 0.8371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086381972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:46 Heat of formation + Delta-G solvation = -24.081492 kcal Electronic energy + Delta-G solvation = -26156.353155 eV Core-core repulsion = 22604.285118 eV Total energy + Delta-G solvation = -3552.068037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.83860 -40.29695 -38.77150 -36.09894 -35.49369 -34.97678 -32.70750 -31.76826 -30.82078 -28.57631 -26.48098 -26.44448 -25.46709 -23.74503 -23.13093 -22.70525 -21.54446 -21.02526 -20.02495 -19.57206 -18.28083 -17.58516 -16.81867 -16.74395 -16.43944 -16.24094 -16.10448 -15.98429 -15.34705 -15.14028 -14.68645 -14.61369 -14.50339 -14.26211 -14.14317 -13.57540 -13.35779 -13.23873 -13.10591 -13.03495 -12.98362 -12.73289 -12.55738 -12.26286 -12.19842 -12.10407 -11.89621 -11.81726 -11.73644 -11.66360 -11.61658 -11.52073 -11.13772 -10.96692 -10.82714 -10.12859 -9.30790 -9.28133 -8.03449 -5.37231 1.36897 1.41055 1.43804 1.48121 2.14346 2.47466 2.91883 3.26758 3.45715 3.49794 3.65056 3.69813 3.73894 3.88443 3.98176 4.00591 4.12600 4.16037 4.25398 4.32994 4.35350 4.40458 4.50163 4.62245 4.67323 4.70521 4.72290 4.82520 4.83444 4.90495 4.90669 4.94896 4.99299 5.04998 5.06421 5.10790 5.23293 5.24197 5.27700 5.30490 5.32762 5.47926 5.52806 5.79905 5.83090 5.92418 6.21907 6.47302 7.06995 7.14106 7.83733 8.02279 9.18072 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.002714 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.886974 B =10314.386557 C =10578.896538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.026 3.974 4 N -0.508 5.508 5 C 0.036 3.964 6 C -0.120 4.120 7 C -0.128 4.128 8 C 0.051 3.949 9 H 0.117 0.883 10 C 0.500 3.500 11 O -0.574 6.574 12 N -0.714 5.714 13 C 0.140 3.860 14 C -0.105 4.105 15 H 0.089 0.911 16 C -0.154 4.154 17 C 0.145 3.855 18 H 0.057 0.943 19 N -0.734 5.734 20 C -0.233 4.233 21 H 0.056 0.944 22 C -0.065 4.065 23 N -0.984 5.984 24 Si 0.956 3.044 25 H -0.280 1.280 26 H -0.249 1.249 27 H -0.296 1.296 28 C -0.134 4.134 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.412 0.588 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.367 0.633 48 H 0.258 0.742 49 H 0.067 0.933 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -25.675 -16.423 30.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.102 4.102 4 N -0.233 5.233 5 C -0.091 4.091 6 C -0.158 4.158 7 C -0.166 4.166 8 C -0.060 4.060 9 H 0.135 0.865 10 C 0.287 3.713 11 O -0.454 6.454 12 N -0.365 5.365 13 C 0.016 3.984 14 C -0.123 4.123 15 H 0.107 0.893 16 C -0.194 4.194 17 C 0.036 3.964 18 H 0.076 0.924 19 N -0.375 5.375 20 C -0.364 4.364 21 H 0.074 0.926 22 C -0.256 4.256 23 N -0.635 5.635 24 Si 0.783 3.217 25 H -0.206 1.206 26 H -0.173 1.173 27 H -0.223 1.223 28 C -0.173 4.173 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.248 0.752 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.200 0.800 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.167 -25.707 -16.595 30.675 hybrid contribution -0.296 0.416 0.736 0.896 sum 1.871 -25.291 -15.860 29.911 Atomic orbital electron populations 1.21709 0.95185 1.02339 1.01449 1.21501 0.96014 0.95088 1.02622 1.22825 0.87527 0.98576 1.01222 1.64205 1.08195 1.08918 1.41996 1.23204 0.95862 0.99051 0.90986 1.22716 0.97361 0.92695 1.02987 1.22759 0.99130 0.99244 0.95506 1.22763 0.93605 0.87500 1.02151 0.86480 1.21411 0.86544 0.81663 0.81723 1.90609 1.48530 1.72933 1.33376 1.46151 1.32386 1.31348 1.26651 1.21284 0.89414 0.89782 0.97908 1.22565 0.98104 0.93887 0.97770 0.89323 1.23704 0.98306 0.96587 1.00812 1.21337 0.95577 0.96659 0.82820 0.92445 1.42439 1.81648 1.10597 1.02862 1.19062 1.36143 0.90170 0.90988 0.92564 1.25525 1.02167 0.99951 0.97999 1.69887 1.55254 1.27593 1.10715 0.85401 0.77638 0.80296 0.78373 1.20581 1.17327 1.22301 1.23365 0.96174 0.95262 1.02505 0.93106 0.93460 0.91137 0.91453 0.91206 0.92585 0.92644 0.88554 0.94136 0.89029 0.89228 0.92232 0.88350 0.75181 0.91976 0.91656 0.89137 0.92806 0.79970 0.93318 0.91444 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.11 -1.90 5.77 30.60 0.18 -1.73 16 3 C 0.03 0.55 3.70 86.30 0.32 0.87 16 4 N -0.51 -9.34 5.26 -864.90 -4.55 -13.88 16 5 C 0.04 0.54 5.36 86.77 0.46 1.00 16 6 C -0.12 -1.40 7.08 31.98 0.23 -1.17 16 7 C -0.13 -1.93 6.43 31.78 0.20 -1.72 16 8 C 0.05 0.90 3.84 44.52 0.17 1.07 16 9 H 0.12 1.70 7.94 -2.39 -0.02 1.68 16 10 C 0.50 11.34 5.08 87.66 0.45 11.79 16 11 O -0.57 -16.88 13.82 -3.03 -0.04 -16.93 16 12 N -0.71 -14.65 5.56 -463.06 -2.57 -17.22 16 13 C 0.14 3.12 5.51 86.38 0.48 3.60 16 14 C -0.10 -2.57 3.63 -10.26 -0.04 -2.61 16 15 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 16 C -0.15 -4.46 7.43 31.12 0.23 -4.23 16 17 C 0.15 5.17 4.56 45.52 0.21 5.38 16 18 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 19 N -0.73 -32.93 5.11 -320.45 -1.64 -34.57 16 20 C -0.23 -13.06 10.45 84.03 0.88 -12.18 16 21 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.98 -62.72 13.97 21.65 0.30 -62.42 16 24 Si 0.96 44.55 27.74 68.60 1.90 46.45 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 26 H -0.25 -10.26 6.51 99.48 0.65 -9.61 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 C -0.13 -3.58 7.39 31.12 0.23 -3.35 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.03 6.90 -2.39 -0.02 1.01 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.30 7.64 -2.39 -0.02 1.28 16 35 H 0.06 1.45 5.34 -2.39 -0.01 1.44 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 0.69 7.48 -2.39 -0.02 0.67 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.15 7.52 -2.39 -0.02 1.13 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.41 7.03 8.32 -92.71 -0.77 6.26 16 43 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.07 1.53 7.84 -2.39 -0.02 1.51 16 45 H 0.09 2.31 7.89 -2.39 -0.02 2.30 16 46 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.37 15.66 5.75 -92.70 -0.53 15.12 16 48 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 49 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.11 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -69.97 386.72 -1.87 -71.84 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.45 Total: 34.97 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.17 Total: -8.23 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -8.46 Total: -128.10 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.04 Total: -16.93 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Total: -69.97 -1.87 -71.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086381972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.762 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds