Wall clock time and date at job start Fri Apr 10 2020 18:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46914 * 2 1 4 4 C 1.46848 * 110.99937 * 51.78443 * 3 2 1 5 5 C 1.53042 * 109.51896 * 185.84126 * 4 3 2 6 6 C 1.53123 * 109.27526 * 300.81663 * 5 4 3 7 7 C 1.53120 * 109.15875 * 57.65958 * 6 5 4 8 8 C 1.46848 * 110.99740 * 175.99331 * 3 2 1 9 9 H 1.08996 * 109.45483 * 294.17369 * 8 3 2 10 10 C 1.50700 * 109.46075 * 54.14622 * 8 3 2 11 11 O 1.21281 * 120.00559 * 28.91428 * 10 8 3 12 12 N 1.34781 * 119.99978 * 208.91181 * 10 8 3 13 13 C 1.46496 * 120.00226 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47046 * 180.02562 * 13 12 10 15 15 H 1.08997 * 112.90956 * 316.24979 * 14 13 12 16 16 C 1.53950 * 113.66382 * 87.55216 * 14 13 12 17 17 C 1.53778 * 87.11338 * 139.88854 * 16 14 13 18 18 H 1.09000 * 113.62087 * 220.08750 * 17 16 14 19 19 N 1.46505 * 113.61562 * 89.18325 * 17 16 14 20 20 C 1.36934 * 120.00028 * 107.50532 * 19 17 16 21 21 H 1.07997 * 120.00124 * 0.02562 * 20 19 17 22 22 C 1.38819 * 120.00045 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99833 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99851 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47196 * 90.00211 * 24 22 20 26 26 H 1.48496 * 109.46891 * 209.99921 * 24 22 20 27 27 H 1.48501 * 109.47307 * 329.99884 * 24 22 20 28 28 C 1.53780 * 113.61091 * 184.99880 * 14 13 12 29 29 H 1.09002 * 109.47184 * 60.00583 * 1 2 3 30 30 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47427 * 299.99738 * 1 2 3 32 32 H 1.09000 * 109.47079 * 240.00331 * 2 1 3 33 33 H 1.09001 * 109.47370 * 120.00178 * 2 1 3 34 34 H 1.08996 * 109.45896 * 65.82174 * 4 3 2 35 35 H 1.09001 * 109.45513 * 305.84797 * 4 3 2 36 36 H 1.09004 * 109.49875 * 180.88483 * 5 4 3 37 37 H 1.08994 * 109.50753 * 60.75812 * 5 4 3 38 38 H 1.08996 * 109.52277 * 297.75269 * 6 5 4 39 39 H 1.09006 * 109.57079 * 177.59474 * 6 5 4 40 40 H 1.09003 * 109.50011 * 182.39650 * 7 6 5 41 41 H 1.08992 * 109.50258 * 62.28689 * 7 6 5 42 42 H 0.97003 * 119.99421 * 359.97438 * 12 10 8 43 43 H 1.08999 * 109.47062 * 60.00368 * 13 12 10 44 44 H 1.08999 * 109.46800 * 300.00093 * 13 12 10 45 45 H 1.08999 * 113.54077 * 25.33895 * 16 14 13 46 46 H 1.09009 * 113.74195 * 254.47116 * 16 14 13 47 47 H 0.97007 * 119.99978 * 287.50907 * 19 17 16 48 48 H 0.97001 * 120.00251 * 180.02562 * 23 22 20 49 49 H 1.09001 * 113.61458 * 105.47646 * 28 14 13 50 50 H 1.08997 * 113.61650 * 334.65192 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3954 2.1638 1.0771 5 6 1.8157 3.6305 0.9574 6 6 3.3411 3.7283 1.0494 7 6 3.9671 2.8698 -0.0532 8 6 3.4844 1.4253 0.0958 9 1 3.7957 1.0365 1.0653 10 6 4.0826 0.5805 -0.9995 11 8 3.4887 0.4361 -2.0470 12 7 5.2778 -0.0145 -0.8150 13 6 5.8596 -0.8353 -1.8799 14 6 7.2082 -1.3903 -1.4169 15 1 7.8217 -0.6459 -0.9093 16 6 7.0989 -2.7232 -0.6544 17 6 8.3602 -3.1705 -1.4119 18 1 8.3284 -4.2102 -1.7378 19 7 9.6090 -2.8254 -0.7279 20 6 10.3545 -3.8050 -0.1283 21 1 10.0223 -4.8321 -0.1600 22 6 11.5375 -3.4780 0.5203 23 7 11.9422 -2.2262 0.5595 24 14 12.5542 -4.8143 1.3389 25 1 13.5309 -5.3609 0.3629 26 1 13.2820 -4.2415 2.4996 27 1 11.6579 -5.9028 1.8048 28 6 7.9614 -2.1687 -2.5085 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.7166 1.7715 2.0420 35 1 0.3109 2.0892 0.9975 36 1 1.3648 4.2054 1.7663 37 1 1.4828 4.0274 -0.0016 38 1 3.6711 3.3676 2.0235 39 1 3.6488 4.7662 0.9219 40 1 5.0532 2.9015 0.0335 41 1 3.6680 3.2548 -1.0281 42 1 5.7530 0.1013 0.0227 43 1 6.0043 -0.2248 -2.7712 44 1 5.1870 -1.6614 -2.1104 45 1 6.2093 -3.2990 -0.9096 46 1 7.2467 -2.6270 0.4213 47 1 9.9076 -1.9028 -0.6996 48 1 12.7689 -1.9976 1.0124 49 1 8.8059 -1.6234 -2.9298 50 1 7.3087 -2.5933 -3.2712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086558654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:58 Heat of formation + Delta-G solvation = -10.569932 kcal Electronic energy + Delta-G solvation = -26075.134995 eV Core-core repulsion = 22523.652863 eV Total energy + Delta-G solvation = -3551.482132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54543 -38.91335 -37.96240 -34.82388 -34.41844 -33.21582 -31.69132 -30.13506 -29.88277 -27.50346 -25.11040 -25.01732 -24.25748 -23.50680 -21.73242 -21.54208 -20.65107 -19.88572 -18.43971 -17.53220 -17.11807 -16.49560 -15.64176 -15.48523 -15.09871 -14.92617 -14.82012 -14.48736 -14.23817 -13.82879 -13.79610 -13.64857 -13.54083 -13.09331 -12.89245 -12.79938 -12.26844 -12.00287 -11.94497 -11.93012 -11.63496 -11.46511 -11.37285 -11.11239 -11.06142 -10.89884 -10.86673 -10.57716 -10.50524 -10.19487 -10.05450 -9.71766 -9.64873 -9.42061 -8.98199 -8.90248 -8.52249 -7.03015 -5.83615 -3.12621 2.59218 3.04054 3.39735 3.45188 3.46601 3.67156 4.43928 4.49548 4.53232 4.61358 4.81254 4.82597 4.93364 4.94775 5.03889 5.07804 5.09372 5.20443 5.23481 5.27129 5.33422 5.40124 5.42818 5.58418 5.59242 5.61046 5.67002 5.68998 5.80202 5.82256 5.85491 5.90907 5.94547 5.96448 6.07285 6.09149 6.19344 6.35374 6.43052 6.57482 6.71685 6.73887 6.84168 6.88332 7.01887 7.53852 7.66348 8.24864 8.35619 9.46310 10.03824 10.38076 11.38853 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002485 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.511908 B =11263.462244 C =11671.621546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 N -0.515 5.515 4 C 0.050 3.950 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.106 4.106 8 C 0.071 3.929 9 H 0.058 0.942 10 C 0.514 3.486 11 O -0.526 6.526 12 N -0.725 5.725 13 C 0.132 3.868 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.168 4.168 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.148 4.148 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.401 0.599 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.068 0.932 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.443 10.440 0.829 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 N -0.241 5.241 4 C -0.077 4.077 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.041 4.041 9 H 0.076 0.924 10 C 0.299 3.701 11 O -0.402 6.402 12 N -0.377 5.377 13 C 0.009 3.991 14 C -0.138 4.138 15 H 0.111 0.889 16 C -0.209 4.209 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.187 4.187 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.235 0.765 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.891 10.365 -0.307 24.223 hybrid contribution 1.210 -0.681 1.745 2.230 sum -20.682 9.684 1.438 22.882 Atomic orbital electron populations 1.21858 0.94750 1.01831 1.02273 1.22244 0.96147 0.88653 1.01463 1.61746 1.03473 1.12778 1.46074 1.22239 0.99972 0.93748 0.91785 1.21618 0.95803 0.95627 1.02584 1.21580 0.95610 1.00085 0.98460 1.21534 1.00135 0.92039 1.00762 1.21603 0.89349 0.96770 0.96362 0.92418 1.20400 0.81131 0.79752 0.88836 1.90685 1.60741 1.61114 1.27646 1.46142 1.20906 1.50969 1.19657 1.21459 0.94066 0.93849 0.89696 1.22735 0.94423 0.97214 0.99455 0.88916 1.23917 1.00636 0.95829 1.00535 1.21051 0.86375 0.96046 0.91022 0.91975 1.42171 1.20813 1.08204 1.63242 1.19291 1.01561 0.89551 1.26930 0.91001 1.24765 0.98357 0.96354 1.01417 1.69657 1.24035 1.16026 1.48364 0.86170 0.80257 0.80818 0.78825 1.21632 1.21754 1.20709 1.23440 0.99411 0.98990 0.96902 0.91627 0.92193 0.92653 0.89255 0.95378 0.94951 0.89725 0.91427 0.90872 0.91982 0.91223 0.90839 0.90252 0.76497 0.91848 0.91685 0.91481 0.91568 0.78113 0.93427 0.91328 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.41 37.16 0.35 -0.93 16 2 C 0.04 0.45 5.30 -3.82 -0.02 0.43 16 3 N -0.51 -5.51 4.36 -228.08 -0.99 -6.50 16 4 C 0.05 0.42 5.03 -3.83 -0.02 0.40 16 5 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 6 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 7 C -0.11 -0.99 5.36 -26.65 -0.14 -1.13 16 8 C 0.07 0.75 2.23 -68.88 -0.15 0.60 16 9 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 10 C 0.51 6.76 6.00 -10.98 -0.07 6.69 16 11 O -0.53 -8.77 15.15 5.56 0.08 -8.69 16 12 N -0.72 -8.82 5.56 -60.29 -0.33 -9.16 16 13 C 0.13 1.77 5.51 -4.04 -0.02 1.74 16 14 C -0.12 -1.76 3.64 -89.72 -0.33 -2.08 16 15 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 16 C -0.17 -2.76 7.44 -25.83 -0.19 -2.95 16 17 C 0.17 3.22 4.56 -67.11 -0.31 2.92 16 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 19 N -0.71 -17.20 5.31 -52.63 -0.28 -17.48 16 20 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 24 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.15 -2.34 7.38 -25.92 -0.19 -2.54 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.40 6.19 -51.93 -0.32 0.08 16 32 H 0.09 1.18 6.10 -51.93 -0.32 0.86 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.63 5.84 -51.93 -0.30 0.33 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.90 7.84 -51.93 -0.41 0.50 16 45 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 46 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 47 H 0.38 9.91 7.90 -40.82 -0.32 9.58 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -31.10 388.44 -10.79 -41.88 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -9.16 Total: 10.10 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.66 Total: -6.13 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.88 Total: -60.02 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.10 -10.79 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086558654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.313 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds