Wall clock time and date at job start Fri Apr 10 2020 18:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46914 * 2 1 4 4 C 1.46848 * 110.99937 * 51.78443 * 3 2 1 5 5 C 1.53042 * 109.51896 * 185.84126 * 4 3 2 6 6 C 1.53123 * 109.27526 * 300.81663 * 5 4 3 7 7 C 1.53120 * 109.15875 * 57.65958 * 6 5 4 8 8 C 1.46848 * 110.99740 * 175.99331 * 3 2 1 9 9 H 1.08996 * 109.45483 * 294.17369 * 8 3 2 10 10 C 1.50700 * 109.46075 * 54.14622 * 8 3 2 11 11 O 1.21281 * 120.00559 * 28.91428 * 10 8 3 12 12 N 1.34781 * 119.99978 * 208.91181 * 10 8 3 13 13 C 1.46496 * 120.00226 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47046 * 180.02562 * 13 12 10 15 15 H 1.08997 * 112.90956 * 316.24979 * 14 13 12 16 16 C 1.53950 * 113.66382 * 87.55216 * 14 13 12 17 17 C 1.53778 * 87.11338 * 139.88854 * 16 14 13 18 18 H 1.09000 * 113.62087 * 220.08750 * 17 16 14 19 19 N 1.46505 * 113.61562 * 89.18325 * 17 16 14 20 20 C 1.36934 * 120.00028 * 107.50532 * 19 17 16 21 21 H 1.07997 * 120.00124 * 0.02562 * 20 19 17 22 22 C 1.38819 * 120.00045 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99833 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99851 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47196 * 90.00211 * 24 22 20 26 26 H 1.48496 * 109.46891 * 209.99921 * 24 22 20 27 27 H 1.48501 * 109.47307 * 329.99884 * 24 22 20 28 28 C 1.53780 * 113.61091 * 184.99880 * 14 13 12 29 29 H 1.09002 * 109.47184 * 60.00583 * 1 2 3 30 30 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47427 * 299.99738 * 1 2 3 32 32 H 1.09000 * 109.47079 * 240.00331 * 2 1 3 33 33 H 1.09001 * 109.47370 * 120.00178 * 2 1 3 34 34 H 1.08996 * 109.45896 * 65.82174 * 4 3 2 35 35 H 1.09001 * 109.45513 * 305.84797 * 4 3 2 36 36 H 1.09004 * 109.49875 * 180.88483 * 5 4 3 37 37 H 1.08994 * 109.50753 * 60.75812 * 5 4 3 38 38 H 1.08996 * 109.52277 * 297.75269 * 6 5 4 39 39 H 1.09006 * 109.57079 * 177.59474 * 6 5 4 40 40 H 1.09003 * 109.50011 * 182.39650 * 7 6 5 41 41 H 1.08992 * 109.50258 * 62.28689 * 7 6 5 42 42 H 0.97003 * 119.99421 * 359.97438 * 12 10 8 43 43 H 1.08999 * 109.47062 * 60.00368 * 13 12 10 44 44 H 1.08999 * 109.46800 * 300.00093 * 13 12 10 45 45 H 1.08999 * 113.54077 * 25.33895 * 16 14 13 46 46 H 1.09009 * 113.74195 * 254.47116 * 16 14 13 47 47 H 0.97007 * 119.99978 * 287.50907 * 19 17 16 48 48 H 0.97001 * 120.00251 * 180.02562 * 23 22 20 49 49 H 1.09001 * 113.61458 * 105.47646 * 28 14 13 50 50 H 1.08997 * 113.61650 * 334.65192 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3954 2.1638 1.0771 5 6 1.8157 3.6305 0.9574 6 6 3.3411 3.7283 1.0494 7 6 3.9671 2.8698 -0.0532 8 6 3.4844 1.4253 0.0958 9 1 3.7957 1.0365 1.0653 10 6 4.0826 0.5805 -0.9995 11 8 3.4887 0.4361 -2.0470 12 7 5.2778 -0.0145 -0.8150 13 6 5.8596 -0.8353 -1.8799 14 6 7.2082 -1.3903 -1.4169 15 1 7.8217 -0.6459 -0.9093 16 6 7.0989 -2.7232 -0.6544 17 6 8.3602 -3.1705 -1.4119 18 1 8.3284 -4.2102 -1.7378 19 7 9.6090 -2.8254 -0.7279 20 6 10.3545 -3.8050 -0.1283 21 1 10.0223 -4.8321 -0.1600 22 6 11.5375 -3.4780 0.5203 23 7 11.9422 -2.2262 0.5595 24 14 12.5542 -4.8143 1.3389 25 1 13.5309 -5.3609 0.3629 26 1 13.2820 -4.2415 2.4996 27 1 11.6579 -5.9028 1.8048 28 6 7.9614 -2.1687 -2.5085 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.7166 1.7715 2.0420 35 1 0.3109 2.0892 0.9975 36 1 1.3648 4.2054 1.7663 37 1 1.4828 4.0274 -0.0016 38 1 3.6711 3.3676 2.0235 39 1 3.6488 4.7662 0.9219 40 1 5.0532 2.9015 0.0335 41 1 3.6680 3.2548 -1.0281 42 1 5.7530 0.1013 0.0227 43 1 6.0043 -0.2248 -2.7712 44 1 5.1870 -1.6614 -2.1104 45 1 6.2093 -3.2990 -0.9096 46 1 7.2467 -2.6270 0.4213 47 1 9.9076 -1.9028 -0.6996 48 1 12.7689 -1.9976 1.0124 49 1 8.8059 -1.6234 -2.9298 50 1 7.3087 -2.5933 -3.2712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086558654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:58 Heat of formation + Delta-G solvation = -31.316453 kcal Electronic energy + Delta-G solvation = -26076.034632 eV Core-core repulsion = 22523.652863 eV Total energy + Delta-G solvation = -3552.381769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48874 -40.18192 -38.98693 -36.02640 -35.34964 -34.88473 -32.58164 -31.89876 -30.58539 -28.79214 -26.44668 -26.01762 -25.54977 -24.79416 -23.03874 -22.30463 -21.58964 -20.67206 -19.83858 -19.33828 -18.28418 -17.46954 -16.79504 -16.52905 -16.43802 -15.88331 -15.81190 -15.64024 -15.60949 -15.10621 -14.87277 -14.62044 -14.44024 -14.30756 -14.14316 -13.68605 -13.63726 -13.28761 -12.94319 -12.91798 -12.70362 -12.66365 -12.64827 -12.35890 -12.16336 -12.10515 -12.07096 -11.81358 -11.60778 -11.53026 -11.48175 -11.21344 -10.97785 -10.86372 -10.55116 -10.06547 -9.29302 -9.00756 -7.96048 -5.24269 1.47751 1.48830 1.57087 1.57204 2.07896 2.55232 2.87907 3.36529 3.59206 3.71090 3.77587 3.81805 3.88159 3.93705 4.04507 4.12816 4.14396 4.19734 4.28888 4.31769 4.37076 4.39493 4.54546 4.56584 4.68295 4.71479 4.76398 4.77629 4.90222 4.91415 4.96092 4.98070 5.06366 5.10086 5.11779 5.17086 5.20920 5.27756 5.30452 5.34193 5.45166 5.48498 5.54411 5.65080 5.95389 6.12599 6.27707 6.55181 7.23101 7.32784 8.09700 8.32245 9.27240 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002485 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.511908 B =11263.462244 C =11671.621546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.049 3.951 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.105 4.105 8 C 0.074 3.926 9 H 0.071 0.929 10 C 0.514 3.486 11 O -0.565 6.565 12 N -0.719 5.719 13 C 0.143 3.857 14 C -0.101 4.101 15 H 0.082 0.918 16 C -0.153 4.153 17 C 0.144 3.856 18 H 0.059 0.941 19 N -0.720 5.720 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.972 3.028 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.270 1.270 28 C -0.135 4.135 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.410 0.590 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.058 0.942 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.851 10.516 1.704 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.078 4.078 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.143 4.143 8 C -0.038 4.038 9 H 0.089 0.911 10 C 0.300 3.700 11 O -0.443 6.443 12 N -0.371 5.371 13 C 0.019 3.981 14 C -0.120 4.120 15 H 0.101 0.899 16 C -0.193 4.193 17 C 0.034 3.966 18 H 0.078 0.922 19 N -0.358 5.358 20 C -0.374 4.374 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.215 1.215 26 H -0.222 1.222 27 H -0.195 1.195 28 C -0.174 4.174 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.245 0.755 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.338 10.422 0.566 25.565 hybrid contribution 1.580 -0.731 1.409 2.240 sum -21.757 9.690 1.975 23.899 Atomic orbital electron populations 1.21814 0.93178 1.02490 1.02598 1.22175 0.97480 0.88701 1.00084 1.61750 1.03498 1.12897 1.47550 1.22338 1.00329 0.93934 0.91212 1.21625 0.95788 0.95139 1.02853 1.21581 0.95574 1.00271 0.97950 1.21541 1.00661 0.91432 1.00665 1.21629 0.89538 0.97001 0.95655 0.91131 1.20880 0.80814 0.79364 0.88919 1.90665 1.61737 1.62527 1.29368 1.46086 1.20790 1.50471 1.19748 1.21261 0.93057 0.93918 0.89863 1.22515 0.94844 0.96290 0.98365 0.89940 1.23735 0.99666 0.96720 0.99204 1.21372 0.85597 0.96847 0.92766 0.92249 1.42299 1.22421 1.07177 1.63881 1.19663 1.01599 0.90281 1.25877 0.90618 1.25543 0.99857 0.98356 1.02949 1.69804 1.24407 1.17842 1.49868 0.85161 0.78675 0.78537 0.77519 1.21498 1.22231 1.19474 1.23345 0.99509 0.97778 0.96779 0.92513 0.91421 0.91014 0.92206 0.95103 0.94294 0.88890 0.89367 0.91890 0.91104 0.90149 0.90230 0.92067 0.75456 0.92050 0.91680 0.89228 0.93317 0.79322 0.93994 0.92356 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.41 71.98 0.68 -1.61 16 2 C 0.04 0.90 5.30 86.30 0.46 1.36 16 3 N -0.53 -10.82 4.36 -875.51 -3.82 -14.64 16 4 C 0.05 0.71 5.03 86.33 0.43 1.14 16 5 C -0.12 -1.44 6.09 30.65 0.19 -1.26 16 6 C -0.12 -1.47 6.00 30.68 0.18 -1.29 16 7 C -0.10 -1.82 5.36 30.65 0.16 -1.65 16 8 C 0.07 1.48 2.23 44.19 0.10 1.58 16 9 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.51 13.25 6.00 87.66 0.53 13.77 16 11 O -0.56 -18.93 15.15 -3.03 -0.05 -18.97 16 12 N -0.72 -16.79 5.56 -463.06 -2.57 -19.36 16 13 C 0.14 3.62 5.51 86.38 0.48 4.09 16 14 C -0.10 -2.86 3.64 -10.21 -0.04 -2.90 16 15 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 16 C -0.15 -4.81 7.44 31.18 0.23 -4.58 16 17 C 0.14 5.46 4.56 45.52 0.21 5.67 16 18 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 19 N -0.72 -35.31 5.31 -320.43 -1.70 -37.01 16 20 C -0.24 -13.23 9.97 84.04 0.84 -12.39 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 23 N -0.97 -58.26 13.06 21.65 0.28 -57.97 16 24 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C -0.13 -4.10 7.38 31.12 0.23 -3.87 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 0.90 6.19 -2.39 -0.01 0.88 16 32 H 0.06 1.60 6.10 -2.39 -0.01 1.59 16 33 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 1.18 5.84 -2.39 -0.01 1.17 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.41 8.19 8.47 -92.71 -0.79 7.41 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.70 7.84 -2.39 -0.02 1.68 16 45 H 0.09 2.45 7.90 -2.39 -0.02 2.43 16 46 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.37 19.65 7.90 -92.70 -0.73 18.92 16 48 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 49 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -67.40 388.44 -1.29 -68.69 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.60 Total: 37.47 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.14 Total: -5.70 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -7.81 Total: -128.99 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.40 -1.29 -68.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086558654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.371 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds