Wall clock time and date at job start Fri Apr 10 2020 18:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46843 * 111.00022 * 2 1 4 4 C 1.53039 * 109.52391 * 185.84211 * 3 2 1 5 5 C 1.53124 * 109.27498 * 300.81655 * 4 3 2 6 6 C 1.53126 * 109.15878 * 57.65601 * 5 4 3 7 7 C 1.46854 * 111.00034 * 124.20878 * 2 1 3 8 8 H 1.09001 * 109.46218 * 294.17869 * 7 2 1 9 9 C 1.50704 * 109.45379 * 54.14802 * 7 2 1 10 10 O 1.21286 * 119.99952 * 20.04674 * 9 7 2 11 11 N 1.34773 * 120.00138 * 200.05241 * 9 7 2 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47454 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.01430 * 305.05965 * 13 12 11 15 15 C 1.53874 * 110.03253 * 66.45001 * 13 12 11 16 16 C 1.54266 * 106.59780 * 119.28674 * 15 13 12 17 17 C 1.54888 * 104.19642 * 23.61056 * 16 15 13 18 18 H 1.08999 * 110.75782 * 80.37623 * 17 16 15 19 19 N 1.46508 * 110.75652 * 203.56041 * 17 16 15 20 20 C 1.36938 * 119.99852 * 273.54820 * 19 17 16 21 21 H 1.08001 * 119.99881 * 359.97438 * 20 19 17 22 22 C 1.38806 * 119.99887 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46940 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47344 * 119.99720 * 24 22 20 27 27 H 1.48502 * 109.47034 * 240.00051 * 24 22 20 28 28 C 1.54266 * 110.03522 * 183.61844 * 13 12 11 29 29 H 1.09001 * 109.46727 * 295.78943 * 1 2 3 30 30 H 1.09000 * 109.47173 * 55.78993 * 1 2 3 31 31 H 1.09004 * 109.47364 * 175.79491 * 1 2 3 32 32 H 1.09001 * 109.45906 * 305.85080 * 3 2 1 33 33 H 1.08994 * 109.46526 * 65.83386 * 3 2 1 34 34 H 1.08997 * 109.50468 * 180.87980 * 4 3 2 35 35 H 1.09004 * 109.50358 * 60.75551 * 4 3 2 36 36 H 1.08998 * 109.52745 * 297.74929 * 5 4 3 37 37 H 1.08999 * 109.52030 * 177.55385 * 5 4 3 38 38 H 1.08994 * 109.50285 * 62.28827 * 6 5 4 39 39 H 1.08998 * 109.50137 * 182.36505 * 6 5 4 40 40 H 0.97002 * 119.99598 * 359.97438 * 11 9 7 41 41 H 1.09007 * 109.46774 * 299.99606 * 12 11 9 42 42 H 1.08998 * 109.47408 * 59.99036 * 12 11 9 43 43 H 1.08999 * 110.03131 * 238.56987 * 15 13 12 44 44 H 1.09000 * 110.03057 * 0.02562 * 15 13 12 45 45 H 1.08997 * 110.48692 * 142.29118 * 16 15 13 46 46 H 1.09004 * 110.48647 * 264.93354 * 16 15 13 47 47 H 0.96998 * 119.99913 * 93.54049 * 19 17 16 48 48 H 0.96999 * 119.99256 * 180.02562 * 23 22 20 49 49 H 1.09001 * 110.48453 * 335.78348 * 28 13 12 50 50 H 1.09003 * 110.48515 * 98.42290 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8715 1.0209 7 6 1.9953 -0.7708 1.1338 8 1 1.7325 -0.2709 2.0661 9 6 1.3982 -2.1544 1.1204 10 8 0.9172 -2.5975 0.0990 11 7 1.3985 -2.8994 2.2436 12 6 0.8186 -4.2446 2.2305 13 6 0.9473 -4.8691 3.6212 14 1 1.9888 -4.8526 3.9426 15 6 0.0730 -4.1003 4.6273 16 6 -0.9524 -5.1105 5.1821 17 6 -0.2802 -6.4896 4.9695 18 1 0.4481 -6.6897 5.7554 19 7 -1.2854 -7.5540 4.9128 20 6 -1.7257 -8.1421 6.0685 21 1 -1.3315 -7.8217 7.0216 22 6 -2.6776 -9.1509 6.0148 23 7 -3.1575 -9.5417 4.8532 24 14 -3.2777 -9.9537 7.5911 25 1 -2.5871 -9.3394 8.7535 26 1 -4.7430 -9.7525 7.7225 27 1 -2.9793 -11.4079 7.5507 28 6 0.4228 -6.3197 3.5998 29 1 -0.3633 0.4471 0.9253 30 1 -0.3633 0.5778 -0.8499 31 1 -0.3634 -1.0249 -0.0754 32 1 1.5634 1.9256 -0.8330 33 1 1.7327 1.8607 0.9376 34 1 3.9099 2.3512 -0.1311 35 1 3.7813 0.8566 -1.0907 36 1 3.8888 1.0354 1.9560 37 1 5.1997 0.4713 0.8904 38 1 3.7813 -1.3837 0.0955 39 1 3.9104 -1.4305 1.8704 40 1 1.7834 -2.5451 3.0604 41 1 -0.2344 -4.1836 1.9553 42 1 1.3485 -4.8617 1.5049 43 1 0.6899 -3.7114 5.4374 44 1 -0.4434 -3.2825 4.1246 45 1 -1.1288 -4.9315 6.2427 46 1 -1.8867 -5.0514 4.6237 47 1 -1.6392 -7.8419 4.0568 48 1 -3.8231 -10.2464 4.8158 49 1 -0.2894 -6.4558 2.7860 50 1 1.2501 -7.0231 3.5057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086734854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:04 Heat of formation + Delta-G solvation = -38.887583 kcal Electronic energy + Delta-G solvation = -25974.006324 eV Core-core repulsion = 22421.296246 eV Total energy + Delta-G solvation = -3552.710078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59552 -38.69836 -37.76745 -34.97970 -33.83875 -33.34108 -31.71762 -30.61510 -29.00107 -27.47657 -26.94146 -24.91314 -23.66328 -23.15926 -22.95894 -20.81776 -20.13113 -19.62372 -19.34792 -17.44574 -17.05772 -16.46370 -15.90419 -15.68127 -15.06382 -15.00808 -14.94064 -14.68406 -14.39985 -13.82186 -13.75416 -13.47314 -13.33465 -13.09440 -12.85232 -12.80058 -12.34948 -12.16040 -11.96965 -11.85448 -11.72328 -11.25611 -11.14317 -11.10963 -10.87465 -10.81580 -10.80349 -10.58230 -10.54378 -10.28118 -10.13561 -9.89981 -9.69892 -9.61004 -9.10612 -8.87860 -8.61113 -6.93967 -5.76422 -3.05013 2.50152 2.91702 3.42972 3.48396 3.50822 3.63398 4.33401 4.39199 4.51746 4.58644 4.71112 4.73766 4.80838 4.88924 4.92531 5.05455 5.08660 5.15664 5.22108 5.28836 5.37361 5.50941 5.52127 5.53434 5.54563 5.68138 5.70474 5.71328 5.73705 5.86654 5.88536 5.95499 5.96029 6.02446 6.06044 6.22283 6.32368 6.38735 6.45943 6.56521 6.63227 6.71375 6.75130 6.86471 7.11459 7.40868 7.71145 8.14601 8.42572 9.53415 10.12381 10.46416 11.46325 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.036160 B = 0.002195 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.150984 B =12752.658549 C =12944.138834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.070 3.930 8 H 0.060 0.940 9 C 0.513 3.487 10 O -0.521 6.521 11 N -0.727 5.727 12 C 0.127 3.873 13 C -0.100 4.100 14 H 0.073 0.927 15 C -0.120 4.120 16 C -0.143 4.143 17 C 0.177 3.823 18 H 0.052 0.948 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 H 0.020 0.980 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.399 0.601 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.069 0.931 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.975 23.639 -7.327 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.042 4.042 8 H 0.077 0.923 9 C 0.298 3.702 10 O -0.396 6.396 11 N -0.379 5.379 12 C 0.004 3.996 13 C -0.119 4.119 14 H 0.092 0.908 15 C -0.158 4.158 16 C -0.184 4.184 17 C 0.066 3.934 18 H 0.070 0.930 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.160 4.160 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.232 0.768 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.088 0.912 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.726 22.990 -8.334 28.546 hybrid contribution -0.712 0.055 1.779 1.917 sum 14.014 23.044 -6.555 27.756 Atomic orbital electron populations 1.22605 0.86410 1.04411 0.99988 1.61647 1.08389 1.12922 1.41541 1.22147 0.95698 0.88693 1.00665 1.21625 0.94371 1.00216 0.99529 1.21581 1.00250 0.95155 0.98735 1.21550 0.91510 0.98047 1.03446 1.21605 0.96518 0.92307 0.93750 0.92276 1.20400 0.79346 0.86947 0.83495 1.90696 1.44832 1.72415 1.31629 1.46098 1.61778 1.17439 1.12610 1.21556 0.98913 0.81543 0.97563 1.21955 0.99954 0.96466 0.93563 0.90828 1.22208 0.97794 0.98173 0.97649 1.23069 0.98271 0.96978 1.00099 1.21152 0.90602 0.87819 0.93794 0.92978 1.42395 1.46367 1.40434 1.06940 1.19285 1.17519 1.13308 0.86784 0.91164 1.24756 0.99974 0.99671 0.96707 1.69673 1.33181 1.32524 1.22704 0.86131 0.78337 0.79124 0.82685 1.20585 1.21902 1.21891 1.22565 1.00160 0.93401 0.99899 0.96141 0.91219 0.89157 0.90303 0.94911 0.91336 0.90799 0.92005 0.91187 0.90255 0.90897 0.76768 0.91190 0.91505 0.92476 0.92477 0.92624 0.91830 0.78191 0.93559 0.91183 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.10 60.07 0.55 0.69 16 2 N -0.52 -5.22 4.51 -236.32 -1.07 -6.28 16 3 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 4 C -0.12 -0.75 6.09 -26.65 -0.16 -0.91 16 5 C -0.12 -0.71 6.00 -26.60 -0.16 -0.87 16 6 C -0.11 -0.81 5.36 -26.65 -0.14 -0.95 16 7 C 0.07 0.65 2.24 -68.87 -0.15 0.49 16 8 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 9 C 0.51 6.11 6.26 -10.99 -0.07 6.04 16 10 O -0.52 -8.32 14.53 5.55 0.08 -8.24 16 11 N -0.73 -7.43 5.29 -60.30 -0.32 -7.75 16 12 C 0.13 1.55 4.70 -4.05 -0.02 1.53 16 13 C -0.10 -1.22 2.98 -89.50 -0.27 -1.49 16 14 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.12 -1.53 6.13 -25.61 -0.16 -1.69 16 16 C -0.14 -2.47 6.51 -25.07 -0.16 -2.63 16 17 C 0.18 3.42 3.53 -65.94 -0.23 3.19 16 18 H 0.05 1.03 8.12 -51.93 -0.42 0.60 16 19 N -0.72 -18.00 5.26 -51.50 -0.27 -18.28 16 20 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 24 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C -0.12 -1.91 5.97 -25.07 -0.15 -2.06 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.09 1.16 5.63 -51.93 -0.29 0.87 16 32 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.40 3.06 8.31 -40.82 -0.34 2.72 16 41 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.70 7.58 -51.93 -0.39 0.31 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.38 10.23 7.73 -40.82 -0.32 9.91 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -32.30 387.03 -10.75 -43.05 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -9.31 Total: 7.38 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.40 Total: -5.53 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.93 Total: -59.88 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.30 -10.75 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086734854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.167 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds