Wall clock time and date at job start Fri Apr 10 2020 18:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46843 * 111.00022 * 2 1 4 4 C 1.53039 * 109.52391 * 185.84211 * 3 2 1 5 5 C 1.53124 * 109.27498 * 300.81655 * 4 3 2 6 6 C 1.53126 * 109.15878 * 57.65601 * 5 4 3 7 7 C 1.46854 * 111.00034 * 124.20878 * 2 1 3 8 8 H 1.09001 * 109.46218 * 294.17869 * 7 2 1 9 9 C 1.50704 * 109.45379 * 54.14802 * 7 2 1 10 10 O 1.21286 * 119.99952 * 20.04674 * 9 7 2 11 11 N 1.34773 * 120.00138 * 200.05241 * 9 7 2 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47454 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.01430 * 305.05965 * 13 12 11 15 15 C 1.53874 * 110.03253 * 66.45001 * 13 12 11 16 16 C 1.54266 * 106.59780 * 119.28674 * 15 13 12 17 17 C 1.54888 * 104.19642 * 23.61056 * 16 15 13 18 18 H 1.08999 * 110.75782 * 80.37623 * 17 16 15 19 19 N 1.46508 * 110.75652 * 203.56041 * 17 16 15 20 20 C 1.36938 * 119.99852 * 273.54820 * 19 17 16 21 21 H 1.08001 * 119.99881 * 359.97438 * 20 19 17 22 22 C 1.38806 * 119.99887 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46940 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47344 * 119.99720 * 24 22 20 27 27 H 1.48502 * 109.47034 * 240.00051 * 24 22 20 28 28 C 1.54266 * 110.03522 * 183.61844 * 13 12 11 29 29 H 1.09001 * 109.46727 * 295.78943 * 1 2 3 30 30 H 1.09000 * 109.47173 * 55.78993 * 1 2 3 31 31 H 1.09004 * 109.47364 * 175.79491 * 1 2 3 32 32 H 1.09001 * 109.45906 * 305.85080 * 3 2 1 33 33 H 1.08994 * 109.46526 * 65.83386 * 3 2 1 34 34 H 1.08997 * 109.50468 * 180.87980 * 4 3 2 35 35 H 1.09004 * 109.50358 * 60.75551 * 4 3 2 36 36 H 1.08998 * 109.52745 * 297.74929 * 5 4 3 37 37 H 1.08999 * 109.52030 * 177.55385 * 5 4 3 38 38 H 1.08994 * 109.50285 * 62.28827 * 6 5 4 39 39 H 1.08998 * 109.50137 * 182.36505 * 6 5 4 40 40 H 0.97002 * 119.99598 * 359.97438 * 11 9 7 41 41 H 1.09007 * 109.46774 * 299.99606 * 12 11 9 42 42 H 1.08998 * 109.47408 * 59.99036 * 12 11 9 43 43 H 1.08999 * 110.03131 * 238.56987 * 15 13 12 44 44 H 1.09000 * 110.03057 * 0.02562 * 15 13 12 45 45 H 1.08997 * 110.48692 * 142.29118 * 16 15 13 46 46 H 1.09004 * 110.48647 * 264.93354 * 16 15 13 47 47 H 0.96998 * 119.99913 * 93.54049 * 19 17 16 48 48 H 0.96999 * 119.99256 * 180.02562 * 23 22 20 49 49 H 1.09001 * 110.48453 * 335.78348 * 28 13 12 50 50 H 1.09003 * 110.48515 * 98.42290 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8715 1.0209 7 6 1.9953 -0.7708 1.1338 8 1 1.7325 -0.2709 2.0661 9 6 1.3982 -2.1544 1.1204 10 8 0.9172 -2.5975 0.0990 11 7 1.3985 -2.8994 2.2436 12 6 0.8186 -4.2446 2.2305 13 6 0.9473 -4.8691 3.6212 14 1 1.9888 -4.8526 3.9426 15 6 0.0730 -4.1003 4.6273 16 6 -0.9524 -5.1105 5.1821 17 6 -0.2802 -6.4896 4.9695 18 1 0.4481 -6.6897 5.7554 19 7 -1.2854 -7.5540 4.9128 20 6 -1.7257 -8.1421 6.0685 21 1 -1.3315 -7.8217 7.0216 22 6 -2.6776 -9.1509 6.0148 23 7 -3.1575 -9.5417 4.8532 24 14 -3.2777 -9.9537 7.5911 25 1 -2.5871 -9.3394 8.7535 26 1 -4.7430 -9.7525 7.7225 27 1 -2.9793 -11.4079 7.5507 28 6 0.4228 -6.3197 3.5998 29 1 -0.3633 0.4471 0.9253 30 1 -0.3633 0.5778 -0.8499 31 1 -0.3634 -1.0249 -0.0754 32 1 1.5634 1.9256 -0.8330 33 1 1.7327 1.8607 0.9376 34 1 3.9099 2.3512 -0.1311 35 1 3.7813 0.8566 -1.0907 36 1 3.8888 1.0354 1.9560 37 1 5.1997 0.4713 0.8904 38 1 3.7813 -1.3837 0.0955 39 1 3.9104 -1.4305 1.8704 40 1 1.7834 -2.5451 3.0604 41 1 -0.2344 -4.1836 1.9553 42 1 1.3485 -4.8617 1.5049 43 1 0.6899 -3.7114 5.4374 44 1 -0.4434 -3.2825 4.1246 45 1 -1.1288 -4.9315 6.2427 46 1 -1.8867 -5.0514 4.6237 47 1 -1.6392 -7.8419 4.0568 48 1 -3.8231 -10.2464 4.8158 49 1 -0.2894 -6.4558 2.7860 50 1 1.2501 -7.0231 3.5057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086734854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:03 Heat of formation + Delta-G solvation = -61.327774 kcal Electronic energy + Delta-G solvation = -25974.979404 eV Core-core repulsion = 22421.296246 eV Total energy + Delta-G solvation = -3553.683157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43976 -39.75925 -38.76688 -36.33630 -35.06389 -34.35884 -32.79244 -32.06645 -30.21430 -28.83334 -27.78524 -26.11360 -25.02665 -24.30984 -23.73470 -21.76608 -21.08436 -20.74902 -20.45989 -19.14942 -18.22911 -17.39613 -16.94262 -16.76962 -16.33815 -16.06532 -15.75587 -15.64746 -15.33964 -15.27382 -15.00336 -14.54120 -14.25972 -14.08054 -13.94504 -13.70798 -13.59380 -13.36551 -13.01466 -12.98090 -12.70708 -12.69277 -12.38973 -12.32197 -12.08802 -11.97292 -11.85929 -11.76612 -11.63912 -11.60446 -11.51959 -11.32131 -11.25187 -10.90856 -10.59114 -10.07401 -9.29524 -8.98376 -7.94400 -5.22606 1.46421 1.47268 1.57240 1.59680 2.06718 2.56138 2.93996 3.37999 3.60194 3.70659 3.78579 3.81129 3.82957 3.99704 4.08298 4.16747 4.29927 4.30649 4.39976 4.44259 4.48865 4.50522 4.59050 4.61972 4.64957 4.77346 4.79053 4.79415 4.83573 4.91040 4.97984 5.04542 5.05899 5.08823 5.13096 5.19617 5.20121 5.26306 5.38108 5.46480 5.47474 5.50195 5.56048 5.64114 5.93759 6.11213 6.28653 6.59934 7.28061 7.33554 8.12335 8.33678 9.29621 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.036160 B = 0.002195 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.150984 B =12752.658549 C =12944.138834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.105 4.105 7 C 0.074 3.926 8 H 0.080 0.920 9 C 0.510 3.490 10 O -0.569 6.569 11 N -0.712 5.712 12 C 0.136 3.864 13 C -0.082 4.082 14 H 0.105 0.895 15 C -0.107 4.107 16 C -0.139 4.139 17 C 0.164 3.836 18 H 0.054 0.946 19 N -0.737 5.737 20 C -0.235 4.235 21 H 0.077 0.923 22 C -0.082 4.082 23 N -0.972 5.972 24 Si 0.972 3.028 25 H -0.264 1.264 26 H -0.296 1.296 27 H -0.294 1.294 28 C -0.116 4.116 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.416 0.584 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.036 0.964 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.052 0.948 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.282 26.091 -5.577 31.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.267 5.267 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.143 4.143 7 C -0.038 4.038 8 H 0.098 0.902 9 C 0.297 3.703 10 O -0.447 6.447 11 N -0.365 5.365 12 C 0.012 3.988 13 C -0.101 4.101 14 H 0.123 0.877 15 C -0.145 4.145 16 C -0.180 4.180 17 C 0.055 3.945 18 H 0.072 0.928 19 N -0.376 5.376 20 C -0.367 4.367 21 H 0.095 0.905 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.802 3.198 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.222 1.222 28 C -0.155 4.155 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.253 0.747 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.202 0.798 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.094 25.505 -6.531 31.390 hybrid contribution -1.399 -0.666 1.198 1.959 sum 15.695 24.839 -5.333 29.862 Atomic orbital electron populations 1.22480 0.87090 1.02588 1.00813 1.61632 1.08058 1.14619 1.42424 1.22228 0.96436 0.87257 1.01312 1.21638 0.93549 1.01324 0.99128 1.21583 1.00740 0.93850 0.99121 1.21577 0.90269 0.99387 1.03100 1.21656 0.97309 0.90365 0.94431 0.90193 1.20992 0.78465 0.87949 0.82929 1.90683 1.46937 1.73591 1.33486 1.45908 1.61085 1.16429 1.13094 1.21296 0.97624 0.82586 0.97329 1.21822 1.01358 0.93626 0.93345 0.87671 1.22135 0.96866 0.97002 0.98469 1.22900 0.98336 0.97025 0.99705 1.21472 0.89836 0.87224 0.95941 0.92787 1.42637 1.47542 1.41841 1.05603 1.19679 1.16586 1.12561 0.87848 0.90500 1.25591 1.00998 1.01037 0.99747 1.69836 1.34230 1.33434 1.24860 0.85079 0.77396 0.77786 0.79564 1.18800 1.22301 1.22157 1.22473 0.99673 0.96275 0.97092 0.95172 0.90541 0.92234 0.90086 0.93853 0.89403 0.92216 0.90594 0.90039 0.92458 0.89119 0.74735 0.93521 0.92322 0.89377 0.91626 0.93096 0.94473 0.79781 0.94162 0.92926 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.10 127.69 1.16 1.53 16 2 N -0.54 -10.28 4.51 -901.59 -4.06 -14.35 16 3 C 0.05 0.70 5.46 86.33 0.47 1.17 16 4 C -0.12 -1.20 6.09 30.65 0.19 -1.01 16 5 C -0.12 -1.00 6.00 30.68 0.18 -0.81 16 6 C -0.11 -1.34 5.36 30.65 0.16 -1.17 16 7 C 0.07 1.22 2.24 44.19 0.10 1.32 16 8 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 9 C 0.51 11.67 6.26 87.66 0.55 12.22 16 10 O -0.57 -18.63 14.53 -3.05 -0.04 -18.67 16 11 N -0.71 -13.04 5.29 -463.07 -2.45 -15.50 16 12 C 0.14 3.16 4.70 86.38 0.41 3.57 16 13 C -0.08 -1.80 2.98 -10.07 -0.03 -1.83 16 14 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 15 C -0.11 -2.41 6.13 31.32 0.19 -2.22 16 16 C -0.14 -4.68 6.51 31.67 0.21 -4.47 16 17 C 0.16 6.26 3.53 46.28 0.16 6.43 16 18 H 0.05 2.05 8.12 -2.39 -0.02 2.03 16 19 N -0.74 -37.56 5.26 -316.84 -1.67 -39.23 16 20 C -0.23 -13.10 9.98 84.03 0.84 -12.26 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 23 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 24 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 25 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 28 C -0.12 -3.58 5.97 31.67 0.19 -3.39 16 29 H 0.03 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 31 H 0.06 1.59 5.63 -2.38 -0.01 1.58 16 32 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.42 4.77 8.31 -92.71 -0.77 4.00 16 41 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.37 20.54 7.73 -92.71 -0.72 19.82 16 48 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.05 1.81 7.74 -2.39 -0.02 1.79 16 50 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -72.93 387.03 -1.25 -74.18 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.58 Total: 30.61 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.25 Total: -5.25 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -7.90 Total: -129.49 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.04 Total: -18.67 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.93 -1.25 -74.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086734854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.850 kcal (2) G-P(sol) polarization free energy of solvation -72.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds