Wall clock time and date at job start Fri Apr 10 2020 18:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46658 * 2 1 4 4 H 1.08997 * 109.99591 * 56.20408 * 3 2 1 5 5 C 1.54323 * 109.88346 * 295.10317 * 3 2 1 6 6 H 1.08996 * 110.86983 * 336.82863 * 5 3 2 7 7 N 1.46496 * 110.71677 * 100.02833 * 5 3 2 8 8 C 1.34785 * 119.99924 * 199.97536 * 7 5 3 9 9 O 1.21278 * 119.99915 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99829 * 180.02562 * 8 7 5 11 11 H 1.08992 * 109.46142 * 320.00352 * 10 8 7 12 12 C 1.53044 * 109.45957 * 79.98137 * 10 8 7 13 13 C 1.53114 * 109.27367 * 179.18379 * 12 10 8 14 14 C 1.53124 * 109.16217 * 302.34229 * 13 12 10 15 15 C 1.53037 * 109.27606 * 57.65521 * 14 13 12 16 16 N 1.46841 * 109.44963 * 200.02512 * 10 8 7 17 17 C 1.46900 * 111.00085 * 54.15500 * 16 10 8 18 18 C 1.55158 * 102.94231 * 218.39321 * 5 3 2 19 19 C 1.54905 * 101.58151 * 35.50344 * 18 5 3 20 20 N 1.47027 * 109.87801 * 177.29771 * 3 2 1 21 21 C 1.36938 * 125.65026 * 298.32309 * 20 3 2 22 22 H 1.07998 * 119.99421 * 348.11493 * 21 20 3 23 23 C 1.38811 * 120.00201 * 168.11489 * 21 20 3 24 24 N 1.31622 * 119.99772 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99947 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47337 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47165 * 120.00338 * 25 23 21 28 28 H 1.48498 * 109.47313 * 240.00328 * 25 23 21 29 29 H 1.08992 * 109.46914 * 185.49411 * 1 2 3 30 30 H 1.09001 * 109.46941 * 305.49278 * 1 2 3 31 31 H 1.08997 * 109.46853 * 65.49031 * 1 2 3 32 32 H 1.08993 * 109.47032 * 240.00161 * 2 1 3 33 33 H 1.09002 * 109.47106 * 119.99985 * 2 1 3 34 34 H 0.96999 * 120.00367 * 19.98187 * 7 5 3 35 35 H 1.09006 * 109.50103 * 299.12083 * 12 10 8 36 36 H 1.08993 * 109.50728 * 59.20386 * 12 10 8 37 37 H 1.08999 * 109.53068 * 62.25046 * 13 12 10 38 38 H 1.09009 * 109.52419 * 182.44003 * 13 12 10 39 39 H 1.08995 * 109.50218 * 177.59707 * 14 13 12 40 40 H 1.09002 * 109.50142 * 297.71889 * 14 13 12 41 41 H 1.09002 * 109.46087 * 60.83941 * 15 14 13 42 42 H 1.08994 * 109.46130 * 180.80346 * 15 14 13 43 43 H 1.08993 * 109.47195 * 59.99442 * 17 16 10 44 44 H 1.08997 * 109.47166 * 179.97438 * 17 16 10 45 45 H 1.09000 * 109.46859 * 299.99300 * 17 16 10 46 46 H 1.09005 * 110.99918 * 153.57634 * 18 5 3 47 47 H 1.08998 * 111.00243 * 277.39149 * 18 5 3 48 48 H 1.09006 * 110.36677 * 81.82708 * 19 18 5 49 49 H 1.09001 * 110.36884 * 204.14771 * 19 18 5 50 50 H 0.97002 * 119.99513 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6270 1.9839 0.8512 5 6 1.6344 2.1426 -1.3142 6 1 1.4537 1.4127 -2.1032 7 7 0.4534 2.9850 -1.1095 8 6 -0.2994 3.3577 -2.1636 9 8 0.0007 2.9952 -3.2814 10 6 -1.5139 4.2247 -1.9532 11 1 -2.0377 3.9035 -1.0529 12 6 -1.0781 5.6834 -1.7967 13 6 -2.3165 6.5629 -1.6035 14 6 -3.2549 6.3793 -2.7995 15 6 -3.6274 4.9004 -2.9270 16 7 -2.4091 4.1014 -3.1106 17 6 -2.7374 2.6942 -3.3748 18 6 2.8776 3.0107 -1.6435 19 6 4.0311 2.1011 -1.1519 20 7 3.5088 1.4537 0.0652 21 6 4.2661 0.9472 1.0875 22 1 3.7974 0.6672 2.0193 23 6 5.6363 0.7937 0.9261 24 7 6.2075 1.1354 -0.2094 25 14 6.6694 0.1035 2.3209 26 1 5.7945 -0.1998 3.4818 27 1 7.3419 -1.1413 1.8698 28 1 7.6932 1.1025 2.7198 29 1 -0.3633 -1.0229 0.0984 30 1 -0.3633 0.5967 0.8367 31 1 -0.3633 0.4263 -0.9351 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.2133 3.2747 -0.2155 35 1 -0.4260 5.7772 -0.9282 36 1 -0.5415 6.0008 -2.6906 37 1 -2.8315 6.2711 -0.6883 38 1 -2.0140 7.6079 -1.5349 39 1 -4.1580 6.9703 -2.6475 40 1 -2.7530 6.7079 -3.7096 41 1 -4.1415 4.5761 -2.0221 42 1 -4.2841 4.7642 -3.7861 43 1 -3.2324 2.2667 -2.5029 44 1 -3.4019 2.6317 -4.2365 45 1 -1.8216 2.1400 -3.5808 46 1 2.9536 3.1933 -2.7154 47 1 2.8564 3.9494 -1.0899 48 1 4.2715 1.3522 -1.9066 49 1 4.9113 2.6990 -0.9157 50 1 7.1650 1.0285 -0.3220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087625476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:13 Heat of formation + Delta-G solvation = -14.965175 kcal Electronic energy + Delta-G solvation = -27423.370073 eV Core-core repulsion = 23871.697348 eV Total energy + Delta-G solvation = -3551.672724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.39221 -38.60549 -37.27543 -34.15386 -33.54001 -32.77162 -31.89509 -31.11409 -28.94803 -27.11580 -26.44891 -24.71123 -23.75558 -23.04757 -22.12159 -20.63566 -20.13487 -20.02256 -19.28928 -17.07278 -16.85466 -16.18863 -15.44232 -15.33636 -14.88485 -14.66210 -14.50984 -14.28901 -13.97856 -13.79567 -13.55533 -13.28169 -13.16242 -12.88135 -12.67352 -12.34268 -11.98675 -11.93378 -11.80843 -11.63781 -11.54609 -11.15008 -11.08537 -10.94123 -10.90050 -10.83801 -10.65873 -10.59348 -10.42975 -10.21291 -10.05217 -9.74200 -9.64778 -9.35712 -8.65045 -8.56438 -8.41337 -6.83289 -5.74543 -3.11188 2.79962 3.19752 3.37957 3.43790 3.46059 3.83909 4.46431 4.54011 4.59430 4.68688 4.91683 4.95807 5.03356 5.23589 5.30056 5.32049 5.35046 5.37433 5.45107 5.51236 5.53724 5.55014 5.67797 5.70240 5.72593 5.80314 5.85086 5.86857 5.90128 6.02481 6.04143 6.13387 6.23210 6.32704 6.39946 6.45450 6.58072 6.70313 6.73030 6.81608 6.92337 6.93490 7.15735 7.53717 7.59828 7.77724 7.80196 8.26293 8.47994 9.17813 9.78853 10.45789 11.36333 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.003271 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.952081 B = 8558.459582 C = 8904.483994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.034 0.966 5 C 0.140 3.860 6 H 0.091 0.909 7 N -0.715 5.715 8 C 0.516 3.484 9 O -0.523 6.523 10 C 0.071 3.929 11 H 0.058 0.942 12 C -0.108 4.108 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.056 3.944 16 N -0.519 5.519 17 C 0.015 3.985 18 C -0.155 4.155 19 C 0.172 3.828 20 N -0.595 5.595 21 C -0.226 4.226 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.019 0.981 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.079 0.921 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.545 8.299 -2.352 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.036 3.964 6 H 0.109 0.891 7 N -0.366 5.366 8 C 0.300 3.700 9 O -0.398 6.398 10 C -0.041 4.041 11 H 0.076 0.924 12 C -0.146 4.146 13 C -0.157 4.157 14 C -0.157 4.157 15 C -0.072 4.072 16 N -0.244 5.244 17 C -0.133 4.133 18 C -0.195 4.195 19 C 0.047 3.953 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.229 0.771 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.098 0.902 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.827 8.157 -3.535 20.820 hybrid contribution 0.027 -0.684 1.862 1.984 sum -18.799 7.474 -1.673 20.299 Atomic orbital electron populations 1.21763 0.97330 1.00458 1.00813 1.22021 0.93520 0.99243 1.02393 1.21056 0.87038 0.93273 0.93282 0.94811 1.22073 0.83547 0.92320 0.98489 0.89146 1.46114 1.28442 1.52469 1.09530 1.20291 0.84126 0.80520 0.85036 1.90671 1.70941 1.54848 1.23373 1.21607 0.92999 0.96517 0.93025 0.92440 1.21548 0.98111 0.91763 1.03164 1.21578 0.95993 0.99911 0.98197 1.21619 0.99433 0.95356 0.99281 1.22135 0.91005 0.93697 1.00323 1.61631 1.14732 1.10452 1.37617 1.22593 1.02825 0.88192 0.99709 1.23413 0.96709 0.99004 1.00370 1.21492 0.93429 0.92970 0.87427 1.44472 0.98331 1.68367 1.20752 1.18998 0.89131 1.35436 0.91901 0.90615 1.24871 0.97003 1.01168 0.97140 1.69941 1.09992 1.52671 1.23746 0.86073 0.80313 0.78444 0.81084 1.20490 1.21722 1.21760 0.93695 0.93525 0.93398 0.92343 0.91756 0.77064 0.90799 0.90240 0.92087 0.91262 0.91476 0.90828 0.95031 0.90456 0.96275 0.91429 0.89053 0.91896 0.92112 0.95708 0.90246 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.57 37.16 0.36 -1.76 16 2 C -0.13 -2.42 5.41 -26.72 -0.14 -2.56 16 3 C 0.16 3.16 2.94 -66.95 -0.20 2.96 16 4 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 5 C 0.14 2.50 1.92 -66.10 -0.13 2.37 16 6 H 0.09 1.76 7.34 -51.93 -0.38 1.38 16 7 N -0.71 -10.17 4.93 -52.03 -0.26 -10.43 16 8 C 0.52 7.56 6.26 -10.98 -0.07 7.49 16 9 O -0.52 -9.65 14.25 5.56 0.08 -9.57 16 10 C 0.07 0.81 2.24 -68.87 -0.15 0.66 16 11 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 12 C -0.11 -1.08 5.36 -26.65 -0.14 -1.23 16 13 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 14 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 15 C 0.06 0.50 5.46 -3.83 -0.02 0.48 16 16 N -0.52 -6.11 4.51 -236.33 -1.07 -7.18 16 17 C 0.01 0.17 9.10 60.06 0.55 0.72 16 18 C -0.16 -3.05 6.77 -24.58 -0.17 -3.22 16 19 C 0.17 4.15 5.46 -2.53 -0.01 4.14 16 20 N -0.59 -14.57 3.13 -162.57 -0.51 -15.08 16 21 C -0.23 -6.08 9.77 -15.06 -0.15 -6.23 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 24 N -0.92 -26.51 10.47 55.49 0.58 -25.93 16 25 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.69 7.38 -51.93 -0.38 0.31 16 32 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 34 H 0.40 4.74 8.31 -40.82 -0.34 4.40 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 43 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.09 1.32 5.62 -51.93 -0.29 1.02 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 49 H 0.08 2.13 6.73 -51.93 -0.35 1.78 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -30.66 381.32 -10.42 -41.08 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -9.28 Total: 3.26 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.70 Total: 1.39 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -1.25 Total: -58.62 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.66 -10.42 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087625476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.113 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds