Wall clock time and date at job start Fri Apr 10 2020 18:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48672 * 111.11305 * 2 1 4 4 C 1.54377 * 104.67466 * 201.09844 * 3 2 1 5 5 C 1.54261 * 105.06151 * 23.76544 * 4 3 2 6 6 C 1.48562 * 111.00384 * 244.57574 * 2 1 3 7 7 H 1.09006 * 110.40462 * 40.14877 * 6 2 1 8 8 C 1.50700 * 110.41399 * 277.82242 * 6 2 1 9 9 O 1.21278 * 120.00030 * 343.04903 * 8 6 2 10 10 N 1.34776 * 119.99836 * 163.05010 * 8 6 2 11 11 C 1.45335 * 120.36470 * 0.02562 * 10 8 6 12 12 C 1.53449 * 108.40602 * 136.63980 * 11 10 8 13 13 C 1.52779 * 109.40192 * 282.29424 * 12 11 10 14 14 C 1.53960 * 109.77852 * 72.87887 * 13 12 11 15 15 C 1.52442 * 110.69850 * 44.37630 * 14 13 12 16 16 C 1.53805 * 109.40312 * 246.29493 * 15 14 13 17 17 H 1.08996 * 109.51828 * 317.86697 * 16 15 14 18 18 N 1.46497 * 109.52202 * 197.73983 * 16 15 14 19 19 C 1.36942 * 119.99627 * 85.00139 * 18 16 15 20 20 H 1.07997 * 120.00218 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99661 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99876 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00049 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47439 * 89.99654 * 23 21 19 25 25 H 1.48495 * 109.47080 * 209.99592 * 23 21 19 26 26 H 1.48500 * 109.47375 * 329.99569 * 23 21 19 27 27 C 1.46959 * 120.36128 * 180.02562 * 10 8 6 28 28 H 1.09002 * 109.46780 * 175.41802 * 1 2 3 29 29 H 1.09000 * 109.47222 * 295.42016 * 1 2 3 30 30 H 1.09000 * 109.46924 * 55.42348 * 1 2 3 31 31 H 1.09000 * 110.44571 * 82.25100 * 3 2 1 32 32 H 1.09003 * 110.40155 * 319.91311 * 3 2 1 33 33 H 1.08999 * 110.31877 * 264.87122 * 4 3 2 34 34 H 1.08998 * 110.40984 * 142.71005 * 4 3 2 35 35 H 1.08999 * 110.32405 * 241.10265 * 5 4 3 36 36 H 1.09007 * 110.40705 * 118.94206 * 5 4 3 37 37 H 1.09002 * 109.68109 * 256.37024 * 11 10 8 38 38 H 1.09000 * 109.67685 * 16.91448 * 11 10 8 39 39 H 1.09001 * 109.48580 * 42.25621 * 12 11 10 40 40 H 1.09001 * 109.48622 * 162.28126 * 12 11 10 41 41 H 1.08996 * 109.38037 * 312.80000 * 13 12 11 42 42 H 1.08994 * 109.42476 * 192.98799 * 13 12 11 43 43 H 1.09002 * 109.22626 * 284.07462 * 14 13 12 44 44 H 1.08997 * 109.22527 * 164.67806 * 14 13 12 45 45 H 1.08999 * 109.48204 * 6.27745 * 15 14 13 46 46 H 1.09003 * 109.48270 * 126.30228 * 15 14 13 47 47 H 0.96998 * 120.00382 * 264.99691 * 18 16 15 48 48 H 0.96996 * 119.99897 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.52788 * 171.76952 * 27 10 8 50 50 H 1.09004 * 109.53680 * 51.55386 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 6 3.4452 1.2499 -0.5376 5 6 3.4432 -0.0542 -1.3616 6 6 2.0015 -0.5954 -1.2526 7 1 1.4087 -0.2730 -2.1086 8 6 2.0104 -2.0994 -1.1573 9 8 1.9152 -2.6390 -0.0754 10 7 2.1243 -2.8447 -2.2745 11 6 2.2394 -2.2063 -3.5750 12 6 3.3275 -2.9329 -4.3768 13 6 4.7034 -2.4835 -3.8881 14 6 4.9906 -3.0957 -2.5049 15 6 4.5988 -4.5686 -2.4758 16 6 3.4186 -4.7644 -1.5091 17 1 3.5828 -4.1717 -0.6092 18 7 3.3098 -6.1804 -1.1498 19 6 4.0628 -6.6862 -0.1239 20 1 4.7371 -6.0414 0.4200 21 6 3.9593 -8.0279 0.2170 22 7 4.6826 -8.5140 1.2033 23 14 2.7935 -9.1434 -0.7242 24 1 3.5089 -9.7475 -1.8770 25 1 2.3051 -10.2200 0.1744 26 1 1.6398 -8.3497 -1.2185 27 6 2.1333 -4.3119 -2.1908 28 1 -0.3633 -1.0244 -0.0821 29 1 -0.3634 0.4411 0.9282 30 1 -0.3633 0.5832 -0.8462 31 1 2.0132 1.7917 1.0120 32 1 1.4122 2.0229 -0.6579 33 1 4.1519 1.1745 0.2888 34 1 3.6960 2.0990 -1.1733 35 1 4.1491 -0.7697 -0.9397 36 1 3.6920 0.1534 -2.4024 37 1 1.2880 -2.2737 -4.1026 38 1 2.5152 -1.1596 -3.4469 39 1 3.2255 -4.0089 -4.2359 40 1 3.2207 -2.6931 -5.4347 41 1 4.7238 -1.3962 -3.8146 42 1 5.4646 -2.8126 -4.5954 43 1 4.4195 -2.5573 -1.7485 44 1 6.0541 -3.0028 -2.2851 45 1 4.3058 -4.8867 -3.4763 46 1 5.4475 -5.1640 -2.1390 47 1 2.7044 -6.7597 -1.6384 48 1 4.6106 -9.4516 1.4412 49 1 2.0850 -4.7343 -3.1945 50 1 1.2744 -4.6492 -1.6107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088278543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:32 Heat of formation + Delta-G solvation = -24.768979 kcal Electronic energy + Delta-G solvation = -28321.553982 eV Core-core repulsion = 24769.456133 eV Total energy + Delta-G solvation = -3552.097849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85641 -39.72097 -38.28388 -36.80804 -35.04734 -34.04818 -33.17851 -31.78739 -30.90374 -28.71008 -27.28604 -26.65013 -25.49815 -24.23124 -22.70643 -22.35152 -21.78439 -20.88715 -20.10442 -19.26280 -18.49190 -17.30625 -17.03509 -16.69445 -16.50687 -16.06361 -15.55213 -15.30010 -15.21621 -15.08116 -14.85990 -14.75562 -14.67113 -14.20365 -13.96769 -13.73617 -13.36174 -13.29406 -13.03566 -12.91745 -12.77605 -12.62853 -12.55419 -12.34040 -12.18765 -12.14737 -11.97172 -11.89486 -11.80501 -11.68798 -11.50847 -11.40877 -11.10592 -10.97410 -10.60095 -9.53942 -9.39289 -9.25745 -8.03862 -5.37981 1.33708 1.40085 1.46903 1.69579 1.94042 2.46979 3.05400 3.26569 3.45182 3.59149 3.65439 3.83325 3.91800 4.00623 4.06779 4.08392 4.15582 4.19745 4.24554 4.39789 4.41890 4.45162 4.47501 4.54101 4.57928 4.67094 4.68982 4.81632 4.86840 4.88848 4.94307 4.94793 5.01382 5.05793 5.14846 5.17647 5.22956 5.25619 5.38727 5.46874 5.49687 5.60208 5.70350 5.75367 5.81573 6.02396 6.19660 6.56408 7.05585 7.34716 7.79793 8.01917 9.18664 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.004496 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.736361 B = 6226.438592 C = 6868.065397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.532 5.532 3 C 0.034 3.966 4 C -0.119 4.119 5 C -0.112 4.112 6 C 0.052 3.948 7 H 0.102 0.898 8 C 0.510 3.490 9 O -0.569 6.569 10 N -0.599 5.599 11 C 0.099 3.901 12 C -0.147 4.147 13 C -0.106 4.106 14 C -0.118 4.118 15 C -0.129 4.129 16 C 0.167 3.833 17 H 0.023 0.977 18 N -0.748 5.748 19 C -0.226 4.226 20 H 0.040 0.960 21 C -0.068 4.068 22 N -0.988 5.988 23 Si 0.964 3.036 24 H -0.270 1.270 25 H -0.296 1.296 26 H -0.252 1.252 27 C 0.122 3.878 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.025 0.975 47 H 0.366 0.634 48 H 0.258 0.742 49 H 0.112 0.888 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 24.910 -17.966 31.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.257 5.257 3 C -0.093 4.093 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.060 4.060 7 H 0.120 0.880 8 C 0.298 3.702 9 O -0.446 6.446 10 N -0.333 5.333 11 C -0.023 4.023 12 C -0.185 4.185 13 C -0.143 4.143 14 C -0.157 4.157 15 C -0.169 4.169 16 C 0.059 3.941 17 H 0.041 0.959 18 N -0.392 5.392 19 C -0.357 4.357 20 H 0.058 0.942 21 C -0.258 4.258 22 N -0.639 5.639 23 Si 0.790 3.210 24 H -0.195 1.195 25 H -0.223 1.223 26 H -0.177 1.177 27 C -0.002 4.002 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.044 0.956 47 H 0.199 0.801 48 H 0.067 0.933 49 H 0.130 0.870 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.133 24.349 -16.738 30.397 hybrid contribution -0.534 -1.197 0.105 1.315 sum -7.667 23.152 -16.633 29.521 Atomic orbital electron populations 1.22449 0.86943 1.01094 1.02258 1.64976 1.09333 1.16857 1.34499 1.23228 0.95645 0.88182 1.02208 1.22316 0.96192 0.97359 0.99829 1.22365 0.92581 0.97358 1.02729 1.22685 0.99427 0.89906 0.93950 0.88023 1.21054 0.75616 0.90225 0.83327 1.90761 1.49663 1.74515 1.29666 1.47810 1.72370 1.05365 1.07705 1.22033 1.00188 0.98262 0.81783 1.22308 0.93925 1.01372 1.00869 1.21693 0.97268 1.00875 0.94459 1.21703 0.99724 0.94854 0.99386 1.22291 0.97940 0.96635 1.00031 1.20781 0.94569 0.83430 0.95355 0.95920 1.42595 1.50220 1.06971 1.39370 1.18890 1.15888 0.93293 1.07674 0.94206 1.25581 1.02039 0.98458 0.99758 1.69915 1.46209 1.14328 1.33431 0.85287 0.79415 0.78266 0.78049 1.19544 1.22253 1.17689 1.21534 0.96381 0.80614 1.01682 0.93858 0.90490 0.92865 0.89960 0.91222 0.91955 0.87679 0.93294 0.87014 0.89529 0.87893 0.91210 0.87586 0.89909 0.91259 0.93262 0.93776 0.89860 0.95589 0.80074 0.93321 0.86993 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.45 127.69 1.21 1.65 16 2 N -0.53 -12.89 4.93 -886.71 -4.37 -17.26 16 3 C 0.03 0.55 6.50 86.43 0.56 1.11 16 4 C -0.12 -1.73 7.00 31.49 0.22 -1.51 16 5 C -0.11 -1.98 5.87 31.49 0.18 -1.79 16 6 C 0.05 1.12 1.68 44.32 0.07 1.19 16 7 H 0.10 1.50 6.91 -2.38 -0.02 1.48 16 8 C 0.51 16.01 5.06 87.66 0.44 16.46 16 9 O -0.57 -25.65 15.32 -3.02 -0.05 -25.69 16 10 N -0.60 -15.54 1.68 -823.88 -1.39 -16.93 16 11 C 0.10 1.43 5.69 86.75 0.49 1.92 16 12 C -0.15 -2.07 5.45 30.67 0.17 -1.91 16 13 C -0.11 -1.76 5.74 30.84 0.18 -1.58 16 14 C -0.12 -3.31 5.41 30.73 0.17 -3.14 16 15 C -0.13 -4.59 5.09 30.68 0.16 -4.44 16 16 C 0.17 7.10 2.38 45.05 0.11 7.21 16 17 H 0.02 1.18 6.14 -2.39 -0.01 1.17 16 18 N -0.75 -38.16 4.93 -322.66 -1.59 -39.76 16 19 C -0.23 -14.17 10.37 84.03 0.87 -13.30 16 20 H 0.04 2.82 8.06 -2.91 -0.02 2.79 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.99 -67.36 13.97 21.65 0.30 -67.06 16 23 Si 0.96 47.86 27.74 68.60 1.90 49.77 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 26 H -0.25 -11.34 6.52 99.48 0.65 -10.69 16 27 C 0.12 3.99 4.64 86.08 0.40 4.39 16 28 H 0.04 1.13 7.96 -2.39 -0.02 1.11 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 0.79 7.98 -2.39 -0.02 0.77 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 0.77 7.91 -2.39 -0.02 0.75 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.21 6.41 -2.39 -0.02 1.20 16 36 H 0.11 1.13 7.05 -2.38 -0.02 1.12 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.03 4.57 -2.39 -0.01 1.01 16 39 H 0.07 1.29 3.35 -2.39 -0.01 1.28 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.99 7.63 -2.39 -0.02 0.97 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.53 3.66 -2.39 -0.01 1.52 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 2.48 5.47 -2.39 -0.01 2.47 16 46 H 0.03 1.11 8.09 -2.39 -0.02 1.09 16 47 H 0.37 17.33 5.66 -92.71 -0.52 16.80 16 48 H 0.26 16.61 8.31 -92.71 -0.77 15.84 16 49 H 0.11 2.88 6.07 -2.38 -0.01 2.86 16 50 H 0.04 1.70 8.09 -2.38 -0.02 1.68 16 Total: -1.00 -87.53 359.58 0.86 -86.67 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.36 Total: 27.80 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.70 Total: 2.46 kcal Atomic # 7 Polarization: -133.96 SS G_CDS: -7.05 Total: -141.00 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.90 Total: 49.77 kcal Total: -87.53 0.86 -86.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088278543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.903 kcal (2) G-P(sol) polarization free energy of solvation -87.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds