Wall clock time and date at job start Fri Apr 10 2020 18:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48530 * 111.00439 * 2 1 4 4 C 1.54930 * 103.23076 * 200.27818 * 3 2 1 5 5 C 1.54600 * 102.92161 * 37.40934 * 4 3 2 6 6 H 1.08996 * 110.39209 * 97.00412 * 5 4 3 7 7 C 1.50700 * 110.30921 * 219.12890 * 5 4 3 8 8 O 1.21286 * 120.00188 * 357.17215 * 7 5 4 9 9 N 1.34774 * 120.00128 * 177.17131 * 7 5 4 10 10 C 1.47142 * 120.18834 * 5.91161 * 9 7 5 11 11 C 1.53618 * 107.51571 * 252.15966 * 10 9 7 12 12 C 1.53492 * 108.45589 * 290.23105 * 11 10 9 13 13 C 1.52467 * 109.12783 * 114.21986 * 12 11 10 14 14 C 1.53012 * 109.86728 * 316.00464 * 13 12 11 15 15 C 1.53428 * 109.37102 * 283.25953 * 14 13 12 16 16 H 1.09000 * 109.63297 * 312.23694 * 15 14 13 17 17 N 1.46503 * 109.63127 * 191.85188 * 15 14 13 18 18 C 1.36934 * 120.00389 * 53.67066 * 17 15 14 19 19 H 1.08002 * 119.99646 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00064 * 180.02562 * 18 17 15 21 21 N 1.31607 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99657 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47265 * 270.00055 * 22 20 18 24 24 H 1.48498 * 109.47079 * 30.00313 * 22 20 18 25 25 H 1.48503 * 109.46873 * 150.00240 * 22 20 18 26 26 C 1.46054 * 120.18978 * 185.93530 * 9 7 5 27 27 C 1.47904 * 111.00062 * 242.59646 * 2 1 3 28 28 H 1.09002 * 109.47226 * 177.39348 * 1 2 3 29 29 H 1.08990 * 109.47338 * 297.40034 * 1 2 3 30 30 H 1.09004 * 109.46579 * 57.40055 * 1 2 3 31 31 H 1.09001 * 110.66356 * 318.71226 * 3 2 1 32 32 H 1.08999 * 110.66733 * 81.83489 * 3 2 1 33 33 H 1.09003 * 110.72108 * 279.05722 * 4 3 2 34 34 H 1.09002 * 110.72765 * 155.76889 * 4 3 2 35 35 H 1.09008 * 109.84271 * 11.66033 * 10 9 7 36 36 H 1.08999 * 109.85056 * 132.64746 * 10 9 7 37 37 H 1.08997 * 109.64149 * 49.92470 * 11 10 9 38 38 H 1.08995 * 109.63819 * 170.33981 * 11 10 9 39 39 H 1.08995 * 109.53058 * 234.11026 * 12 11 10 40 40 H 1.08997 * 109.52869 * 354.25959 * 12 11 10 41 41 H 1.09006 * 109.43633 * 76.13774 * 13 12 11 42 42 H 1.09007 * 109.42998 * 196.00017 * 13 12 11 43 43 H 1.08995 * 109.63179 * 163.18667 * 14 13 12 44 44 H 1.09002 * 109.30726 * 43.12906 * 14 13 12 45 45 H 0.97002 * 119.99941 * 233.67977 * 17 15 14 46 46 H 0.97001 * 120.00413 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.36611 * 306.71241 * 26 9 7 48 48 H 1.09004 * 109.36630 * 187.10958 * 26 9 7 49 49 H 1.09000 * 109.91785 * 26.50235 * 27 2 1 50 50 H 1.08992 * 109.92081 * 265.20026 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4492 1.2106 -0.5227 5 6 3.2983 0.1052 -1.5930 6 1 3.2144 0.5468 -2.5859 7 6 4.4717 -0.8389 -1.5389 8 8 5.3808 -0.6327 -0.7629 9 7 4.5110 -1.9125 -2.3527 10 6 3.4780 -2.0972 -3.3841 11 6 2.5734 -3.2530 -2.9306 12 6 3.3730 -4.5601 -3.0210 13 6 3.5732 -5.1214 -1.6176 14 6 3.9700 -3.9964 -0.6593 15 6 5.4458 -3.6385 -0.8780 16 1 6.0439 -4.5494 -0.9019 17 7 5.9091 -2.7740 0.2102 18 6 5.7486 -3.1666 1.5122 19 1 5.2807 -4.1137 1.7368 20 6 6.1871 -2.3472 2.5433 21 7 6.7568 -1.1928 2.2696 22 14 5.9686 -2.8832 4.3194 23 1 4.6589 -2.3991 4.8250 24 1 6.0125 -4.3654 4.3982 25 1 7.0608 -2.3109 5.1470 26 6 5.5789 -2.8993 -2.2157 27 6 1.9991 -0.6355 -1.2259 28 1 -0.3634 -1.0266 -0.0467 29 1 -0.3633 0.4729 0.9123 30 1 -0.3633 0.5537 -0.8658 31 1 1.4239 2.0204 -0.6730 32 1 2.0041 1.7977 1.0095 33 1 4.1115 0.8834 0.2789 34 1 3.8124 2.1351 -0.9716 35 1 2.8899 -1.1851 -3.4864 36 1 3.9462 -2.3453 -4.3366 37 1 2.2564 -3.0879 -1.9009 38 1 1.6988 -3.3096 -3.5785 39 1 2.8248 -5.2814 -3.6270 40 1 4.3430 -4.3630 -3.4774 41 1 2.6453 -5.5790 -1.2742 42 1 4.3622 -5.8732 -1.6368 43 1 3.8236 -4.3234 0.3700 44 1 3.3505 -3.1211 -0.8550 45 1 6.3296 -1.9235 0.0085 46 1 7.0636 -0.6204 2.9901 47 1 6.5444 -2.3950 -2.2554 48 1 5.5146 -3.6174 -3.0332 49 1 1.2760 -0.5404 -2.0359 50 1 2.2122 -1.6875 -1.0364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088425482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:54 Heat of formation + Delta-G solvation = 25.189125 kcal Electronic energy + Delta-G solvation = -29258.092319 eV Core-core repulsion = 25708.160816 eV Total energy + Delta-G solvation = -3549.931503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.57117 -38.40810 -36.97279 -34.72758 -33.50974 -32.15412 -31.64098 -29.33244 -29.15585 -26.97663 -26.20121 -25.59273 -23.55966 -22.92443 -21.90140 -21.04014 -20.21073 -19.39433 -17.78311 -17.04956 -16.95815 -16.05001 -15.52832 -15.32728 -14.93039 -14.72643 -14.13830 -14.08999 -14.02937 -13.50247 -13.33691 -13.03347 -12.95424 -12.54405 -12.38565 -12.04895 -11.99728 -11.78398 -11.60917 -11.47469 -11.22918 -11.02251 -10.94607 -10.89489 -10.81311 -10.64089 -10.58986 -10.35945 -10.18321 -10.03879 -9.93013 -9.60091 -9.25639 -8.76610 -8.55606 -8.27142 -7.95162 -6.50570 -5.38089 -2.64755 3.29855 3.50023 3.61156 3.65579 3.66729 4.12305 4.67995 4.72872 4.82311 4.88271 4.97005 5.04707 5.22757 5.25564 5.34199 5.37092 5.41398 5.45835 5.49825 5.56819 5.59993 5.63972 5.69303 5.79531 5.84590 5.87672 5.90077 5.99781 6.02381 6.07676 6.11529 6.17165 6.24457 6.29717 6.39472 6.45811 6.56805 6.74098 6.82794 6.90951 7.00569 7.02644 7.14361 7.17625 7.40264 7.93696 7.99897 8.73450 8.99698 9.93724 10.60346 11.03995 11.82275 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.007331 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.915385 B = 3818.576346 C = 5107.243768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.514 5.514 3 C 0.036 3.964 4 C -0.111 4.111 5 C -0.115 4.115 6 H 0.089 0.911 7 C 0.510 3.490 8 O -0.462 6.462 9 N -0.613 5.613 10 C 0.109 3.891 11 C -0.155 4.155 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.142 4.142 15 C 0.164 3.836 16 H 0.025 0.975 17 N -0.716 5.716 18 C -0.230 4.230 19 H 0.060 0.940 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.891 3.109 23 H -0.294 1.294 24 H -0.286 1.286 25 H -0.295 1.295 26 C 0.110 3.890 27 C 0.043 3.957 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.403 0.597 46 H 0.247 0.753 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.044 0.956 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.534 0.832 -15.331 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.238 5.238 3 C -0.091 4.091 4 C -0.149 4.149 5 C -0.137 4.137 6 H 0.107 0.893 7 C 0.296 3.704 8 O -0.331 6.331 9 N -0.349 5.349 10 C -0.015 4.015 11 C -0.193 4.193 12 C -0.162 4.162 13 C -0.158 4.158 14 C -0.181 4.181 15 C 0.053 3.947 16 H 0.042 0.958 17 N -0.369 5.369 18 C -0.362 4.362 19 H 0.078 0.922 20 C -0.206 4.206 21 N -0.563 5.563 22 Si 0.724 3.276 23 H -0.222 1.222 24 H -0.213 1.213 25 H -0.222 1.222 26 C -0.012 4.012 27 C -0.084 4.084 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.248 0.752 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.062 0.938 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.841 0.654 -14.274 18.557 hybrid contribution -0.613 0.209 0.220 0.684 sum -12.455 0.864 -14.053 18.798 Atomic orbital electron populations 1.22507 0.88263 1.01802 1.00535 1.64738 1.07443 1.15124 1.36486 1.23264 0.95241 0.89463 1.01165 1.22511 0.96804 0.96582 0.99033 1.22113 0.94326 0.96690 1.00607 0.89322 1.20230 0.88120 0.81549 0.80541 1.90670 1.36770 1.70929 1.34761 1.47855 1.28062 1.23944 1.35077 1.21929 0.89929 0.98650 0.90947 1.22664 0.98035 0.95398 1.03162 1.21862 1.00224 0.96274 0.97818 1.21528 1.00432 0.98801 0.95019 1.22500 0.99401 0.97503 0.98701 1.20774 0.92745 0.93211 0.87990 0.95795 1.43189 1.70899 1.22603 1.00163 1.19094 1.31921 1.01485 0.83750 0.92174 1.24630 1.02282 0.96900 0.96805 1.69748 1.45714 1.11017 1.29834 0.86424 0.76993 0.77347 0.86856 1.22157 1.21253 1.22188 1.21897 0.89988 0.90653 0.98661 1.23128 0.93756 1.00707 0.90857 0.91463 0.91321 0.95864 0.94344 0.89846 0.87316 0.91188 0.90521 0.91169 0.89397 0.91941 0.92919 0.91162 0.93231 0.92499 0.91911 0.90916 0.75195 0.94294 0.91899 0.90107 0.93817 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.40 60.07 0.56 0.77 16 2 N -0.51 -7.77 5.55 -238.72 -1.33 -9.09 16 3 C 0.04 0.51 6.56 -1.90 -0.01 0.50 16 4 C -0.11 -1.78 6.39 -24.87 -0.16 -1.94 16 5 C -0.12 -1.70 2.45 -90.41 -0.22 -1.92 16 6 H 0.09 1.05 7.40 -51.93 -0.38 0.66 16 7 C 0.51 9.38 5.99 -10.99 -0.07 9.31 16 8 O -0.46 -11.09 11.45 5.55 0.06 -11.03 16 9 N -0.61 -9.41 1.66 -172.89 -0.29 -9.70 16 10 C 0.11 1.19 5.17 -3.37 -0.02 1.17 16 11 C -0.15 -1.67 5.22 -26.16 -0.14 -1.81 16 12 C -0.12 -1.41 5.48 -26.75 -0.15 -1.56 16 13 C -0.12 -1.70 5.66 -27.00 -0.15 -1.85 16 14 C -0.14 -2.65 4.83 -26.50 -0.13 -2.78 16 15 C 0.16 3.40 2.92 -67.50 -0.20 3.20 16 16 H 0.02 0.53 7.90 -51.93 -0.41 0.11 16 17 N -0.72 -19.14 4.41 -53.01 -0.23 -19.37 16 18 C -0.23 -6.81 9.19 -15.06 -0.14 -6.95 16 19 H 0.06 1.75 6.85 -52.49 -0.36 1.39 16 20 C -0.01 -0.30 5.50 -17.44 -0.10 -0.40 16 21 N -0.91 -29.51 13.06 55.49 0.72 -28.78 16 22 Si 0.89 23.95 29.55 -169.99 -5.02 18.92 16 23 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 26 C 0.11 1.87 4.85 -4.07 -0.02 1.85 16 27 C 0.04 0.60 4.69 -2.75 -0.01 0.59 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.23 8.00 -51.93 -0.42 -0.18 16 31 H 0.04 0.45 7.96 -51.93 -0.41 0.04 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.11 2.31 6.91 -51.93 -0.36 1.95 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.73 5.42 -51.92 -0.28 0.45 16 36 H 0.07 0.64 7.97 -51.93 -0.41 0.23 16 37 H 0.09 1.16 3.45 -51.93 -0.18 0.98 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.79 4.49 -51.93 -0.23 0.55 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.81 7.85 -51.92 -0.41 0.40 16 43 H 0.06 1.38 6.58 -51.93 -0.34 1.04 16 44 H 0.07 1.36 2.36 -51.93 -0.12 1.23 16 45 H 0.40 11.66 4.48 -41.06 -0.18 11.48 16 46 H 0.25 7.77 8.31 -40.82 -0.34 7.44 16 47 H 0.06 1.19 7.99 -51.93 -0.42 0.77 16 48 H 0.08 1.09 5.07 -51.93 -0.26 0.83 16 49 H 0.04 0.49 7.59 -51.93 -0.39 0.09 16 50 H 0.09 1.49 3.41 -51.93 -0.18 1.31 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -34.99 348.30 -9.62 -44.61 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -7.85 Total: 11.02 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.94 Total: -1.83 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -1.12 Total: -66.94 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.06 Total: -11.03 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.02 Total: 18.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.99 -9.62 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088425482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.798 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds