Wall clock time and date at job start Fri Apr 10 2020 18:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48530 * 111.00439 * 2 1 4 4 C 1.54930 * 103.23076 * 200.27818 * 3 2 1 5 5 C 1.54600 * 102.92161 * 37.40934 * 4 3 2 6 6 H 1.08996 * 110.39209 * 97.00412 * 5 4 3 7 7 C 1.50700 * 110.30921 * 219.12890 * 5 4 3 8 8 O 1.21286 * 120.00188 * 357.17215 * 7 5 4 9 9 N 1.34774 * 120.00128 * 177.17131 * 7 5 4 10 10 C 1.47142 * 120.18834 * 5.91161 * 9 7 5 11 11 C 1.53618 * 107.51571 * 252.15966 * 10 9 7 12 12 C 1.53492 * 108.45589 * 290.23105 * 11 10 9 13 13 C 1.52467 * 109.12783 * 114.21986 * 12 11 10 14 14 C 1.53012 * 109.86728 * 316.00464 * 13 12 11 15 15 C 1.53428 * 109.37102 * 283.25953 * 14 13 12 16 16 H 1.09000 * 109.63297 * 312.23694 * 15 14 13 17 17 N 1.46503 * 109.63127 * 191.85188 * 15 14 13 18 18 C 1.36934 * 120.00389 * 53.67066 * 17 15 14 19 19 H 1.08002 * 119.99646 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00064 * 180.02562 * 18 17 15 21 21 N 1.31607 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99657 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47265 * 270.00055 * 22 20 18 24 24 H 1.48498 * 109.47079 * 30.00313 * 22 20 18 25 25 H 1.48503 * 109.46873 * 150.00240 * 22 20 18 26 26 C 1.46054 * 120.18978 * 185.93530 * 9 7 5 27 27 C 1.47904 * 111.00062 * 242.59646 * 2 1 3 28 28 H 1.09002 * 109.47226 * 177.39348 * 1 2 3 29 29 H 1.08990 * 109.47338 * 297.40034 * 1 2 3 30 30 H 1.09004 * 109.46579 * 57.40055 * 1 2 3 31 31 H 1.09001 * 110.66356 * 318.71226 * 3 2 1 32 32 H 1.08999 * 110.66733 * 81.83489 * 3 2 1 33 33 H 1.09003 * 110.72108 * 279.05722 * 4 3 2 34 34 H 1.09002 * 110.72765 * 155.76889 * 4 3 2 35 35 H 1.09008 * 109.84271 * 11.66033 * 10 9 7 36 36 H 1.08999 * 109.85056 * 132.64746 * 10 9 7 37 37 H 1.08997 * 109.64149 * 49.92470 * 11 10 9 38 38 H 1.08995 * 109.63819 * 170.33981 * 11 10 9 39 39 H 1.08995 * 109.53058 * 234.11026 * 12 11 10 40 40 H 1.08997 * 109.52869 * 354.25959 * 12 11 10 41 41 H 1.09006 * 109.43633 * 76.13774 * 13 12 11 42 42 H 1.09007 * 109.42998 * 196.00017 * 13 12 11 43 43 H 1.08995 * 109.63179 * 163.18667 * 14 13 12 44 44 H 1.09002 * 109.30726 * 43.12906 * 14 13 12 45 45 H 0.97002 * 119.99941 * 233.67977 * 17 15 14 46 46 H 0.97001 * 120.00413 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.36611 * 306.71241 * 26 9 7 48 48 H 1.09004 * 109.36630 * 187.10958 * 26 9 7 49 49 H 1.09000 * 109.91785 * 26.50235 * 27 2 1 50 50 H 1.08992 * 109.92081 * 265.20026 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4492 1.2106 -0.5227 5 6 3.2983 0.1052 -1.5930 6 1 3.2144 0.5468 -2.5859 7 6 4.4717 -0.8389 -1.5389 8 8 5.3808 -0.6327 -0.7629 9 7 4.5110 -1.9125 -2.3527 10 6 3.4780 -2.0972 -3.3841 11 6 2.5734 -3.2530 -2.9306 12 6 3.3730 -4.5601 -3.0210 13 6 3.5732 -5.1214 -1.6176 14 6 3.9700 -3.9964 -0.6593 15 6 5.4458 -3.6385 -0.8780 16 1 6.0439 -4.5494 -0.9019 17 7 5.9091 -2.7740 0.2102 18 6 5.7486 -3.1666 1.5122 19 1 5.2807 -4.1137 1.7368 20 6 6.1871 -2.3472 2.5433 21 7 6.7568 -1.1928 2.2696 22 14 5.9686 -2.8832 4.3194 23 1 4.6589 -2.3991 4.8250 24 1 6.0125 -4.3654 4.3982 25 1 7.0608 -2.3109 5.1470 26 6 5.5789 -2.8993 -2.2157 27 6 1.9991 -0.6355 -1.2259 28 1 -0.3634 -1.0266 -0.0467 29 1 -0.3633 0.4729 0.9123 30 1 -0.3633 0.5537 -0.8658 31 1 1.4239 2.0204 -0.6730 32 1 2.0041 1.7977 1.0095 33 1 4.1115 0.8834 0.2789 34 1 3.8124 2.1351 -0.9716 35 1 2.8899 -1.1851 -3.4864 36 1 3.9462 -2.3453 -4.3366 37 1 2.2564 -3.0879 -1.9009 38 1 1.6988 -3.3096 -3.5785 39 1 2.8248 -5.2814 -3.6270 40 1 4.3430 -4.3630 -3.4774 41 1 2.6453 -5.5790 -1.2742 42 1 4.3622 -5.8732 -1.6368 43 1 3.8236 -4.3234 0.3700 44 1 3.3505 -3.1211 -0.8550 45 1 6.3296 -1.9235 0.0085 46 1 7.0636 -0.6204 2.9901 47 1 6.5444 -2.3950 -2.2554 48 1 5.5146 -3.6174 -3.0332 49 1 1.2760 -0.5404 -2.0359 50 1 2.2122 -1.6875 -1.0364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088425482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:52 Heat of formation + Delta-G solvation = -0.405909 kcal Electronic energy + Delta-G solvation = -29259.202203 eV Core-core repulsion = 25708.160816 eV Total energy + Delta-G solvation = -3551.041387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.84419 -39.58546 -38.31883 -36.43149 -34.84351 -33.78906 -33.04137 -31.05991 -30.33322 -28.41863 -27.45410 -26.64664 -25.47533 -24.19444 -23.17693 -22.16319 -21.42849 -20.77905 -19.24906 -18.88519 -18.23543 -17.26834 -16.93350 -16.79735 -16.33533 -16.03738 -15.82601 -15.30112 -15.15370 -14.82375 -14.73725 -14.49276 -14.20963 -14.01616 -13.60186 -13.39954 -13.19470 -13.04268 -12.96366 -12.80284 -12.73355 -12.50960 -12.38613 -12.27497 -12.18470 -12.16741 -12.02290 -11.79927 -11.76086 -11.52432 -11.24849 -11.11143 -10.88907 -10.73231 -10.27283 -9.30567 -9.27020 -8.69965 -7.73066 -4.98137 1.40138 1.43806 1.50592 1.95077 2.28062 2.62464 3.10926 3.51310 3.54029 3.62323 3.83705 3.97566 4.04648 4.13336 4.19920 4.23906 4.30079 4.33167 4.36251 4.45435 4.52099 4.54596 4.58746 4.59518 4.66870 4.74328 4.75660 4.86134 4.89410 4.93900 4.99666 5.02269 5.05341 5.12741 5.17022 5.25894 5.32621 5.39122 5.49235 5.54275 5.60411 5.64311 5.77004 5.91055 5.99066 6.17978 6.44361 6.70369 7.46637 7.67247 8.46759 8.79855 9.48099 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.007331 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.915385 B = 3818.576346 C = 5107.243768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.556 5.556 3 C 0.045 3.955 4 C -0.114 4.114 5 C -0.108 4.108 6 H 0.132 0.868 7 C 0.499 3.501 8 O -0.532 6.532 9 N -0.606 5.606 10 C 0.102 3.898 11 C -0.151 4.151 12 C -0.119 4.119 13 C -0.113 4.113 14 C -0.131 4.131 15 C 0.151 3.849 16 H 0.016 0.984 17 N -0.730 5.730 18 C -0.225 4.225 19 H 0.059 0.941 20 C -0.077 4.077 21 N -0.952 5.952 22 Si 0.955 3.045 23 H -0.296 1.296 24 H -0.273 1.273 25 H -0.297 1.297 26 C 0.119 3.881 27 C 0.051 3.949 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.392 0.608 46 H 0.239 0.761 47 H 0.036 0.964 48 H 0.125 0.875 49 H 0.085 0.915 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.673 0.072 -18.868 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.281 5.281 3 C -0.082 4.082 4 C -0.152 4.152 5 C -0.130 4.130 6 H 0.149 0.851 7 C 0.286 3.714 8 O -0.406 6.406 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.189 4.189 12 C -0.156 4.156 13 C -0.151 4.151 14 C -0.170 4.170 15 C 0.042 3.958 16 H 0.034 0.966 17 N -0.381 5.381 18 C -0.358 4.358 19 H 0.076 0.924 20 C -0.270 4.270 21 N -0.603 5.603 22 Si 0.786 3.214 23 H -0.224 1.224 24 H -0.198 1.198 25 H -0.223 1.223 26 C -0.004 4.004 27 C -0.077 4.077 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.235 0.765 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.143 0.857 49 H 0.103 0.897 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.042 -0.173 -17.877 23.364 hybrid contribution 0.333 0.368 1.255 1.350 sum -14.709 0.195 -16.622 22.197 Atomic orbital electron populations 1.22527 0.86136 1.02468 1.01696 1.64642 1.09743 1.15779 1.37955 1.23178 0.94046 0.89796 1.01169 1.22389 0.97118 0.97846 0.97871 1.22160 0.93182 0.95488 1.02127 0.85069 1.21019 0.88212 0.82393 0.79728 1.90647 1.39426 1.72828 1.37702 1.47936 1.28385 1.22375 1.35282 1.22360 0.89053 1.00053 0.90439 1.22616 0.99109 0.94680 1.02493 1.21843 1.01000 0.97253 0.95520 1.21456 1.00628 0.96932 0.96063 1.22340 0.97758 0.99489 0.97421 1.21086 0.93647 0.92503 0.88558 0.96616 1.43451 1.71119 1.22953 1.00620 1.19427 1.29933 1.00928 0.85480 0.92350 1.25389 1.03430 0.97369 1.00798 1.69957 1.47718 1.12300 1.30310 0.85391 0.76399 0.77512 0.82067 1.22385 1.19793 1.22338 1.21747 0.89716 0.91273 0.97643 1.23069 0.93848 0.99074 0.91689 0.91171 0.91402 0.93265 0.90719 0.91276 0.93867 0.89413 0.88265 0.88119 0.91889 0.88242 0.90006 0.90847 0.92349 0.92669 0.96533 0.90558 0.76492 0.95229 0.94605 0.85700 0.89659 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.40 127.69 1.20 1.61 16 2 N -0.56 -16.10 5.55 -909.18 -5.05 -21.15 16 3 C 0.05 1.23 6.56 86.65 0.57 1.80 16 4 C -0.11 -3.72 6.39 31.80 0.20 -3.52 16 5 C -0.11 -3.02 2.45 -10.66 -0.03 -3.04 16 6 H 0.13 2.53 7.40 -2.39 -0.02 2.51 16 7 C 0.50 18.53 5.99 87.66 0.53 19.06 16 8 O -0.53 -27.28 11.45 -3.05 -0.03 -27.32 16 9 N -0.61 -17.67 1.66 -819.29 -1.36 -19.03 16 10 C 0.10 1.73 5.17 86.46 0.45 2.18 16 11 C -0.15 -2.53 5.22 30.97 0.16 -2.37 16 12 C -0.12 -2.15 5.48 30.58 0.17 -1.98 16 13 C -0.11 -2.98 5.66 30.42 0.17 -2.80 16 14 C -0.13 -4.96 4.83 30.74 0.15 -4.82 16 15 C 0.15 6.47 2.92 45.27 0.13 6.60 16 16 H 0.02 0.72 7.90 -2.39 -0.02 0.70 16 17 N -0.73 -41.35 4.41 -321.61 -1.42 -42.77 16 18 C -0.22 -13.98 9.19 84.03 0.77 -13.21 16 19 H 0.06 3.56 6.85 -2.91 -0.02 3.54 16 20 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 21 N -0.95 -65.26 13.06 21.65 0.28 -64.98 16 22 Si 0.96 51.70 29.55 68.60 2.03 53.73 16 23 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 24 H -0.27 -13.94 7.11 99.48 0.71 -13.24 16 25 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 26 C 0.12 3.99 4.85 86.60 0.42 4.41 16 27 C 0.05 1.28 4.69 86.45 0.41 1.68 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 0.76 8.00 -2.38 -0.02 0.74 16 31 H 0.07 1.48 7.96 -2.39 -0.02 1.46 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 2.00 6.91 -2.39 -0.02 1.98 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.10 1.29 5.42 -2.38 -0.01 1.27 16 36 H 0.10 1.20 7.97 -2.39 -0.02 1.18 16 37 H 0.06 1.45 3.45 -2.39 -0.01 1.44 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.28 4.49 -2.39 -0.01 1.27 16 41 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.05 1.47 7.85 -2.38 -0.02 1.46 16 43 H 0.02 0.74 6.58 -2.39 -0.02 0.73 16 44 H 0.08 2.86 2.36 -2.39 -0.01 2.85 16 45 H 0.39 24.29 4.48 -96.47 -0.43 23.85 16 46 H 0.24 16.00 8.31 -92.71 -0.77 15.22 16 47 H 0.04 1.39 7.99 -2.39 -0.02 1.38 16 48 H 0.13 3.02 5.07 -2.38 -0.01 3.01 16 49 H 0.09 1.43 7.59 -2.39 -0.02 1.42 16 50 H 0.07 2.16 3.41 -2.39 -0.01 2.15 16 Total: -1.00 -86.09 348.30 0.74 -85.35 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.52 Total: 35.09 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.76 Total: 1.07 kcal Atomic # 7 Polarization: -140.39 SS G_CDS: -7.54 Total: -147.93 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.03 Total: -27.32 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.03 Total: 53.73 kcal Total: -86.09 0.74 -85.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088425482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.943 kcal (2) G-P(sol) polarization free energy of solvation -86.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds