Wall clock time and date at job start Fri Apr 10 2020 18:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47263 * 270.00236 * 3 2 1 5 5 H 1.48499 * 109.46938 * 29.99881 * 3 2 1 6 6 H 1.48497 * 109.47195 * 150.00100 * 3 2 1 7 7 C 1.38809 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00267 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00033 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00024 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.48391 * 35.03469 * 10 9 7 12 12 C 1.52880 * 109.49974 * 155.07611 * 10 9 7 13 13 C 1.53950 * 109.72926 * 192.88005 * 12 10 9 14 14 C 1.52442 * 110.73456 * 44.37072 * 13 12 10 15 15 C 1.53804 * 109.39881 * 246.26953 * 14 13 12 16 16 C 1.51803 * 109.05569 * 77.78894 * 15 14 13 17 17 N 1.46962 * 109.39805 * 287.18556 * 16 15 14 18 18 C 1.34776 * 120.36828 * 291.90271 * 17 16 15 19 19 O 1.21281 * 119.99739 * 354.60327 * 18 17 16 20 20 C 1.50698 * 119.99921 * 174.87604 * 18 17 16 21 21 N 1.46902 * 109.46993 * 186.29996 * 20 18 17 22 22 C 1.48532 * 110.99794 * 52.60699 * 21 20 18 23 23 C 1.54937 * 103.22819 * 159.72065 * 22 21 20 24 24 C 1.54602 * 102.92113 * 322.58225 * 23 22 21 25 25 C 1.47903 * 110.99731 * 170.00078 * 21 20 18 26 26 C 1.45338 * 119.26454 * 111.62999 * 17 16 15 27 27 H 0.97008 * 120.00084 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99283 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.42663 * 312.95898 * 12 10 9 30 30 H 1.08996 * 109.42653 * 72.79798 * 12 10 9 31 31 H 1.09008 * 109.22323 * 164.69225 * 13 12 10 32 32 H 1.08995 * 109.22618 * 284.03964 * 13 12 10 33 33 H 1.08999 * 109.48441 * 6.24665 * 14 13 12 34 34 H 1.08999 * 109.48653 * 126.29550 * 14 13 12 35 35 H 1.09006 * 109.52166 * 197.73241 * 15 14 13 36 36 H 1.08998 * 109.52661 * 317.86414 * 15 14 13 37 37 H 1.09009 * 109.16966 * 167.33867 * 16 15 14 38 38 H 1.09002 * 109.59932 * 47.30165 * 16 15 14 39 39 H 1.09003 * 109.47498 * 306.30122 * 20 18 17 40 40 H 1.09000 * 109.47051 * 66.30386 * 20 18 17 41 41 H 1.09000 * 110.66343 * 278.15360 * 22 21 20 42 42 H 1.08995 * 110.67037 * 41.28663 * 22 21 20 43 43 H 1.08994 * 110.72790 * 204.22907 * 23 22 21 44 44 H 1.09001 * 110.87903 * 81.00991 * 23 22 21 45 45 H 1.08995 * 110.31103 * 263.04546 * 24 23 22 46 46 H 1.08998 * 110.38963 * 140.91105 * 24 23 22 47 47 H 1.08997 * 109.91946 * 333.50919 * 25 21 20 48 48 H 1.08997 * 109.91721 * 94.60857 * 25 21 20 49 49 H 1.08997 * 109.67834 * 76.66588 * 26 17 16 50 50 H 1.09004 * 109.67402 * 197.20368 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5654 -3.2063 -0.5903 12 6 5.4993 -2.2592 -0.6067 13 6 6.1484 -3.6224 -0.9075 14 6 5.1469 -4.5633 -1.5674 15 6 4.8466 -5.7364 -0.6191 16 6 3.8836 -5.2694 0.4575 17 7 4.5925 -4.3913 1.3989 18 6 5.5459 -4.8905 2.2103 19 8 5.7553 -6.0848 2.2367 20 6 6.3474 -3.9652 3.0892 21 7 7.4123 -4.7251 3.7574 22 6 8.2178 -5.4915 2.7725 23 6 9.5376 -5.7708 3.5345 24 6 9.7562 -4.4674 4.3366 25 6 8.3629 -3.8191 4.4379 26 6 4.2582 -2.9775 1.4409 27 1 -0.4850 0.8401 0.0004 28 1 3.8645 -0.3621 0.0004 29 1 5.4075 -1.6895 -1.5315 30 1 6.1227 -1.7082 0.0973 31 1 6.9974 -3.4761 -1.5754 32 1 6.4983 -4.0667 0.0243 33 1 4.2249 -4.0221 -1.7795 34 1 5.5662 -4.9462 -2.4978 35 1 4.3969 -6.5541 -1.1824 36 1 5.7730 -6.0781 -0.1576 37 1 3.4947 -6.1370 0.9907 38 1 3.0596 -4.7227 -0.0011 39 1 6.7907 -3.1780 2.4793 40 1 5.6938 -3.5195 3.8390 41 1 7.7194 -6.4250 2.5113 42 1 8.4073 -4.8929 1.8815 43 1 10.3583 -5.9363 2.8366 44 1 9.4260 -6.6225 4.2055 45 1 10.4428 -3.8075 3.8065 46 1 10.1413 -4.6935 5.3309 47 1 8.3686 -2.8477 3.9436 48 1 8.0799 -3.7016 5.4839 49 1 3.3189 -2.8382 1.9760 50 1 5.0532 -2.4273 1.9445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088425987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:01 Heat of formation + Delta-G solvation = -4.193809 kcal Electronic energy + Delta-G solvation = -27928.452575 eV Core-core repulsion = 24377.246932 eV Total energy + Delta-G solvation = -3551.205643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58581 -38.83228 -37.35979 -34.79444 -34.10773 -32.65456 -32.07479 -30.49979 -28.93434 -27.92156 -26.57603 -25.82170 -23.61249 -22.40133 -21.52941 -21.26343 -20.91703 -19.69050 -18.55749 -17.69846 -16.96842 -16.36802 -16.12095 -15.69913 -15.30206 -14.95441 -14.53103 -14.12960 -14.03699 -13.87841 -13.72629 -13.41620 -13.01365 -12.80638 -12.64100 -12.55835 -12.39797 -12.27286 -11.91138 -11.68024 -11.56720 -11.49279 -11.37229 -11.06041 -10.99628 -10.89805 -10.76110 -10.74471 -10.47047 -10.37156 -10.32926 -9.87601 -9.68682 -9.45522 -9.01814 -8.49368 -8.25716 -7.38213 -5.86950 -3.24338 2.79562 3.12184 3.29593 3.32697 3.39113 3.94580 4.48421 4.49825 4.52908 4.73465 4.79631 4.90983 4.96194 5.06103 5.14563 5.18029 5.27140 5.30055 5.33507 5.38879 5.41462 5.52973 5.55293 5.60153 5.63672 5.68576 5.69154 5.77573 5.82658 5.87539 5.89968 6.00365 6.02625 6.10404 6.13964 6.17166 6.19587 6.25594 6.43895 6.51642 6.55218 6.67101 6.77782 6.83694 6.89834 7.69161 7.87421 8.31408 8.40261 9.08977 9.81412 9.99922 11.30828 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.004133 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.798025 B = 6772.876741 C = 7515.811073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.160 3.840 11 H 0.078 0.922 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.128 4.128 15 C -0.134 4.134 16 C 0.116 3.884 17 N -0.597 5.597 18 C 0.515 3.485 19 O -0.535 6.535 20 C 0.026 3.974 21 N -0.500 5.500 22 C 0.032 3.968 23 C -0.125 4.125 24 C -0.131 4.131 25 C 0.033 3.967 26 C 0.080 3.920 27 H 0.261 0.739 28 H 0.362 0.638 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.974 -8.814 3.528 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.050 3.950 11 H 0.095 0.905 12 C -0.165 4.165 13 C -0.150 4.150 14 C -0.165 4.165 15 C -0.172 4.172 16 C -0.006 4.006 17 N -0.330 5.330 18 C 0.302 3.698 19 O -0.412 6.412 20 C -0.105 4.105 21 N -0.225 5.225 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.169 4.169 25 C -0.095 4.095 26 C -0.045 4.045 27 H 0.071 0.929 28 H 0.195 0.805 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.529 -9.818 3.902 20.467 hybrid contribution 0.827 2.175 -0.477 2.376 sum 18.357 -7.642 3.425 20.177 Atomic orbital electron populations 1.69697 1.05139 1.25983 1.56839 1.24671 0.95185 0.97224 1.01627 0.86577 0.79184 0.85039 0.77826 1.21041 1.21715 1.20330 1.19038 0.80366 0.94728 1.43843 0.89132 1.42776 1.04078 1.01816 1.89958 1.20913 0.91542 0.89893 0.92658 0.90468 1.22071 0.96727 0.96691 1.01041 1.21635 0.97764 0.95473 1.00140 1.21854 1.00495 0.96386 0.97811 1.21931 1.00811 0.97702 0.96786 1.21391 0.94990 0.94058 0.90185 1.47850 1.37490 1.09940 1.37746 1.20275 0.80538 0.88923 0.80067 1.90604 1.67437 1.15771 1.67425 1.22292 0.95429 0.95168 0.97586 1.64662 1.09750 1.22005 1.26047 1.23461 0.92780 1.00338 0.92924 1.22505 0.97107 0.97774 0.98916 1.22389 0.96366 0.97159 1.00954 1.22933 0.91634 0.94683 1.00235 1.22683 1.01224 0.78928 1.01693 0.92928 0.80546 0.91539 0.92757 0.92986 0.92455 0.90286 0.92561 0.91329 0.91039 0.91431 0.89015 0.91931 0.87795 0.87353 0.94591 0.91335 0.90763 0.91665 0.91063 0.93756 0.90194 0.90493 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.97 55.49 0.78 -27.23 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.02 27.74 -169.99 -4.71 16.31 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 7 C -0.25 -6.52 10.36 -15.06 -0.16 -6.68 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.74 -15.94 4.93 -53.26 -0.26 -16.20 16 10 C 0.16 2.71 2.29 -67.77 -0.16 2.55 16 11 H 0.08 1.36 3.29 -51.93 -0.17 1.19 16 12 C -0.13 -1.82 5.22 -26.30 -0.14 -1.96 16 13 C -0.11 -1.42 5.40 -26.52 -0.14 -1.57 16 14 C -0.13 -1.61 5.49 -26.60 -0.15 -1.75 16 15 C -0.13 -1.70 5.55 -26.92 -0.15 -1.85 16 16 C 0.12 1.63 5.13 -4.40 -0.02 1.61 16 17 N -0.60 -8.65 1.70 -174.68 -0.30 -8.94 16 18 C 0.51 7.61 5.66 -10.99 -0.06 7.55 16 19 O -0.53 -9.08 12.78 5.56 0.07 -9.01 16 20 C 0.03 0.34 3.95 -4.98 -0.02 0.32 16 21 N -0.50 -6.29 5.22 -231.89 -1.21 -7.50 16 22 C 0.03 0.39 5.36 -1.90 -0.01 0.38 16 23 C -0.12 -1.19 7.06 -24.87 -0.18 -1.37 16 24 C -0.13 -1.13 6.93 -25.37 -0.18 -1.30 16 25 C 0.03 0.33 6.70 -2.75 -0.02 0.31 16 26 C 0.08 1.25 5.53 -4.44 -0.02 1.23 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.36 7.70 5.66 -40.82 -0.23 7.47 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.74 7.87 -51.93 -0.41 0.33 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.76 5.38 -51.93 -0.28 0.48 16 33 H 0.08 1.10 5.47 -51.93 -0.28 0.82 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.00 6.38 -51.93 -0.33 0.67 16 37 H 0.07 0.97 8.04 -51.92 -0.42 0.55 16 38 H 0.09 1.35 6.06 -51.93 -0.31 1.03 16 39 H 0.06 0.74 7.06 -51.93 -0.37 0.38 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.11 1.55 6.11 -51.93 -0.32 1.23 16 42 H 0.04 0.44 8.02 -51.93 -0.42 0.02 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.04 0.42 7.57 -51.93 -0.39 0.03 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 50 H 0.07 0.98 5.66 -51.93 -0.29 0.68 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -29.91 361.62 -10.14 -40.05 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -8.46 Total: 9.46 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.49 Total: -2.37 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.99 Total: -59.88 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.91 -10.14 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088425987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.855 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds