Wall clock time and date at job start Fri Apr 10 2020 18:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47263 * 270.00236 * 3 2 1 5 5 H 1.48499 * 109.46938 * 29.99881 * 3 2 1 6 6 H 1.48497 * 109.47195 * 150.00100 * 3 2 1 7 7 C 1.38809 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00267 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00033 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00024 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.48391 * 35.03469 * 10 9 7 12 12 C 1.52880 * 109.49974 * 155.07611 * 10 9 7 13 13 C 1.53950 * 109.72926 * 192.88005 * 12 10 9 14 14 C 1.52442 * 110.73456 * 44.37072 * 13 12 10 15 15 C 1.53804 * 109.39881 * 246.26953 * 14 13 12 16 16 C 1.51803 * 109.05569 * 77.78894 * 15 14 13 17 17 N 1.46962 * 109.39805 * 287.18556 * 16 15 14 18 18 C 1.34776 * 120.36828 * 291.90271 * 17 16 15 19 19 O 1.21281 * 119.99739 * 354.60327 * 18 17 16 20 20 C 1.50698 * 119.99921 * 174.87604 * 18 17 16 21 21 N 1.46902 * 109.46993 * 186.29996 * 20 18 17 22 22 C 1.48532 * 110.99794 * 52.60699 * 21 20 18 23 23 C 1.54937 * 103.22819 * 159.72065 * 22 21 20 24 24 C 1.54602 * 102.92113 * 322.58225 * 23 22 21 25 25 C 1.47903 * 110.99731 * 170.00078 * 21 20 18 26 26 C 1.45338 * 119.26454 * 111.62999 * 17 16 15 27 27 H 0.97008 * 120.00084 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99283 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.42663 * 312.95898 * 12 10 9 30 30 H 1.08996 * 109.42653 * 72.79798 * 12 10 9 31 31 H 1.09008 * 109.22323 * 164.69225 * 13 12 10 32 32 H 1.08995 * 109.22618 * 284.03964 * 13 12 10 33 33 H 1.08999 * 109.48441 * 6.24665 * 14 13 12 34 34 H 1.08999 * 109.48653 * 126.29550 * 14 13 12 35 35 H 1.09006 * 109.52166 * 197.73241 * 15 14 13 36 36 H 1.08998 * 109.52661 * 317.86414 * 15 14 13 37 37 H 1.09009 * 109.16966 * 167.33867 * 16 15 14 38 38 H 1.09002 * 109.59932 * 47.30165 * 16 15 14 39 39 H 1.09003 * 109.47498 * 306.30122 * 20 18 17 40 40 H 1.09000 * 109.47051 * 66.30386 * 20 18 17 41 41 H 1.09000 * 110.66343 * 278.15360 * 22 21 20 42 42 H 1.08995 * 110.67037 * 41.28663 * 22 21 20 43 43 H 1.08994 * 110.72790 * 204.22907 * 23 22 21 44 44 H 1.09001 * 110.87903 * 81.00991 * 23 22 21 45 45 H 1.08995 * 110.31103 * 263.04546 * 24 23 22 46 46 H 1.08998 * 110.38963 * 140.91105 * 24 23 22 47 47 H 1.08997 * 109.91946 * 333.50919 * 25 21 20 48 48 H 1.08997 * 109.91721 * 94.60857 * 25 21 20 49 49 H 1.08997 * 109.67834 * 76.66588 * 26 17 16 50 50 H 1.09004 * 109.67402 * 197.20368 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5654 -3.2063 -0.5903 12 6 5.4993 -2.2592 -0.6067 13 6 6.1484 -3.6224 -0.9075 14 6 5.1469 -4.5633 -1.5674 15 6 4.8466 -5.7364 -0.6191 16 6 3.8836 -5.2694 0.4575 17 7 4.5925 -4.3913 1.3989 18 6 5.5459 -4.8905 2.2103 19 8 5.7553 -6.0848 2.2367 20 6 6.3474 -3.9652 3.0892 21 7 7.4123 -4.7251 3.7574 22 6 8.2178 -5.4915 2.7725 23 6 9.5376 -5.7708 3.5345 24 6 9.7562 -4.4674 4.3366 25 6 8.3629 -3.8191 4.4379 26 6 4.2582 -2.9775 1.4409 27 1 -0.4850 0.8401 0.0004 28 1 3.8645 -0.3621 0.0004 29 1 5.4075 -1.6895 -1.5315 30 1 6.1227 -1.7082 0.0973 31 1 6.9974 -3.4761 -1.5754 32 1 6.4983 -4.0667 0.0243 33 1 4.2249 -4.0221 -1.7795 34 1 5.5662 -4.9462 -2.4978 35 1 4.3969 -6.5541 -1.1824 36 1 5.7730 -6.0781 -0.1576 37 1 3.4947 -6.1370 0.9907 38 1 3.0596 -4.7227 -0.0011 39 1 6.7907 -3.1780 2.4793 40 1 5.6938 -3.5195 3.8390 41 1 7.7194 -6.4250 2.5113 42 1 8.4073 -4.8929 1.8815 43 1 10.3583 -5.9363 2.8366 44 1 9.4260 -6.6225 4.2055 45 1 10.4428 -3.8075 3.8065 46 1 10.1413 -4.6935 5.3309 47 1 8.3686 -2.8477 3.9436 48 1 8.0799 -3.7016 5.4839 49 1 3.3189 -2.8382 1.9760 50 1 5.0532 -2.4273 1.9445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088425987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:00 Heat of formation + Delta-G solvation = -23.058974 kcal Electronic energy + Delta-G solvation = -27929.270630 eV Core-core repulsion = 24377.246932 eV Total energy + Delta-G solvation = -3552.023698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75764 -39.82124 -38.53962 -36.35944 -35.27995 -34.12027 -33.27152 -32.06422 -29.73549 -29.22416 -27.73851 -26.97398 -25.26433 -23.61419 -22.84385 -22.18835 -21.68758 -20.98184 -19.79430 -19.52592 -18.12409 -17.46738 -17.28017 -16.76240 -16.46482 -16.23516 -15.97119 -15.42146 -15.23566 -15.02470 -14.79519 -14.66144 -14.39577 -14.10478 -14.04001 -13.84253 -13.38584 -13.25747 -13.19541 -12.99753 -12.77896 -12.65810 -12.49016 -12.24609 -12.17814 -12.14880 -11.91866 -11.90188 -11.78920 -11.55367 -11.47870 -11.42428 -11.23017 -10.93553 -10.54577 -9.60287 -9.41137 -9.19951 -7.99475 -5.33824 1.40770 1.43990 1.51165 1.61881 1.96079 2.51158 3.02573 3.31834 3.38946 3.65983 3.72820 3.77567 3.94536 3.97951 4.04427 4.07829 4.15989 4.20946 4.25699 4.34161 4.34672 4.39256 4.52892 4.53533 4.64109 4.68028 4.72725 4.75602 4.82692 4.92491 4.95169 4.99448 5.00253 5.11036 5.12835 5.17013 5.23257 5.28488 5.31321 5.34378 5.38936 5.48205 5.67015 5.81312 5.89010 5.95599 6.23335 6.49490 7.10275 7.21543 7.85283 8.04185 9.21736 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.004133 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.798025 B = 6772.876741 C = 7515.811073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.061 4.061 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.226 4.226 8 H 0.058 0.942 9 N -0.745 5.745 10 C 0.156 3.844 11 H 0.068 0.932 12 C -0.119 4.119 13 C -0.105 4.105 14 C -0.126 4.126 15 C -0.124 4.124 16 C 0.114 3.886 17 N -0.594 5.594 18 C 0.514 3.486 19 O -0.557 6.557 20 C 0.030 3.970 21 N -0.519 5.519 22 C 0.033 3.967 23 C -0.121 4.121 24 C -0.125 4.125 25 C 0.030 3.970 26 C 0.094 3.906 27 H 0.256 0.744 28 H 0.367 0.633 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.084 0.916 49 H 0.048 0.952 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.434 -8.124 3.675 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.229 1.229 6 H -0.171 1.171 7 C -0.357 4.357 8 H 0.076 0.924 9 N -0.388 5.388 10 C 0.047 3.953 11 H 0.086 0.914 12 C -0.158 4.158 13 C -0.143 4.143 14 C -0.163 4.163 15 C -0.162 4.162 16 C -0.008 4.008 17 N -0.327 5.327 18 C 0.303 3.697 19 O -0.436 6.436 20 C -0.101 4.101 21 N -0.244 5.244 22 C -0.094 4.094 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.097 4.097 26 C -0.032 4.032 27 H 0.065 0.935 28 H 0.200 0.800 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.067 0.933 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.058 -9.163 4.055 23.321 hybrid contribution -0.276 1.787 -0.519 1.881 sum 20.782 -7.376 3.537 22.334 Atomic orbital electron populations 1.69885 1.07251 1.26572 1.59737 1.25459 0.95951 1.01152 1.02719 0.85468 0.78860 0.79829 0.77943 1.20766 1.22888 1.17051 1.18969 0.82446 0.93276 1.40990 0.92429 1.42732 1.02417 1.03723 1.89950 1.21106 0.92792 0.87859 0.93525 0.91398 1.21989 0.94866 0.97896 1.01016 1.21582 0.98066 0.94277 1.00376 1.21822 0.99887 0.96100 0.98480 1.21837 0.99864 0.98239 0.96288 1.21410 0.95231 0.93618 0.90586 1.47811 1.37532 1.09436 1.37962 1.20679 0.80249 0.88952 0.79845 1.90607 1.68033 1.16943 1.68049 1.22283 0.95520 0.94865 0.97475 1.64641 1.10502 1.22973 1.26294 1.23348 0.93705 0.99055 0.93290 1.22491 0.96195 0.98250 0.99012 1.22394 0.95758 0.96550 1.01637 1.23024 0.91838 0.94679 1.00185 1.22371 1.00719 0.79765 1.00347 0.93488 0.79990 0.91777 0.91185 0.91077 0.92848 0.91886 0.90835 0.90004 0.91916 0.92126 0.90142 0.90472 0.87309 0.90090 0.94609 0.89812 0.91248 0.90302 0.89906 0.92925 0.89808 0.93341 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.20 13.97 21.65 0.30 -60.90 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 43.13 27.74 68.60 1.90 45.03 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.25 -9.77 6.52 99.48 0.65 -9.13 16 7 C -0.23 -11.96 10.36 84.03 0.87 -11.09 16 8 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 9 N -0.75 -31.14 4.93 -322.43 -1.59 -32.73 16 10 C 0.16 5.10 2.29 45.10 0.10 5.21 16 11 H 0.07 2.40 3.29 -2.38 -0.01 2.40 16 12 C -0.12 -3.10 5.22 30.88 0.16 -2.94 16 13 C -0.10 -2.38 5.40 30.73 0.17 -2.21 16 14 C -0.13 -2.93 5.49 30.68 0.17 -2.76 16 15 C -0.12 -3.03 5.55 30.47 0.17 -2.86 16 16 C 0.11 3.22 5.13 85.90 0.44 3.67 16 17 N -0.59 -16.92 1.70 -824.94 -1.40 -18.32 16 18 C 0.51 14.76 5.66 87.66 0.50 15.25 16 19 O -0.56 -18.83 12.78 -3.03 -0.04 -18.87 16 20 C 0.03 0.70 3.95 85.56 0.34 1.03 16 21 N -0.52 -12.16 5.22 -887.56 -4.64 -16.80 16 22 C 0.03 0.76 5.36 86.65 0.46 1.23 16 23 C -0.12 -2.05 7.06 31.80 0.22 -1.83 16 24 C -0.13 -1.78 6.93 31.48 0.22 -1.56 16 25 C 0.03 0.53 6.70 86.45 0.58 1.10 16 26 C 0.09 2.84 5.53 86.75 0.48 3.32 16 27 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.37 14.67 5.66 -92.71 -0.52 14.14 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 1.62 7.87 -2.39 -0.02 1.60 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.27 5.38 -2.39 -0.01 1.26 16 33 H 0.06 1.70 5.47 -2.39 -0.01 1.69 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.06 1.68 6.38 -2.39 -0.02 1.67 16 37 H 0.06 1.79 8.04 -2.38 -0.02 1.77 16 38 H 0.08 2.45 6.06 -2.39 -0.01 2.44 16 39 H 0.08 1.59 7.06 -2.39 -0.02 1.57 16 40 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.08 2.30 6.11 -2.39 -0.01 2.28 16 42 H 0.04 0.80 8.02 -2.39 -0.02 0.78 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 0.83 7.57 -2.39 -0.02 0.81 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.05 1.76 8.09 -2.39 -0.02 1.74 16 50 H 0.09 2.36 5.66 -2.38 -0.01 2.34 16 Total: -1.00 -65.96 361.62 0.24 -65.72 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.35 Total: 34.27 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.35 Total: 2.59 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -7.32 Total: -128.74 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.04 Total: -18.87 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.90 Total: 45.03 kcal Total: -65.96 0.24 -65.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088425987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.661 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds