Wall clock time and date at job start Fri Apr 10 2020 18:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.00066 * 2 1 4 4 C 1.54327 * 109.88475 * 238.89941 * 2 1 3 5 5 H 1.08996 * 110.72159 * 336.75915 * 4 2 1 6 6 N 1.46498 * 110.71986 * 100.02739 * 4 2 1 7 7 C 1.34776 * 120.00533 * 199.97811 * 6 4 2 8 8 O 1.21280 * 119.99251 * 0.02562 * 7 6 4 9 9 C 1.50695 * 120.00176 * 180.02562 * 7 6 4 10 10 H 1.08997 * 109.52418 * 300.12461 * 9 7 6 11 11 C 1.53114 * 109.52338 * 60.31895 * 9 7 6 12 12 C 1.53040 * 109.27737 * 177.55533 * 11 9 7 13 13 N 1.46843 * 109.52477 * 300.82110 * 12 11 9 14 14 C 1.46901 * 111.00015 * 185.83929 * 13 12 11 15 15 C 1.46845 * 111.20071 * 61.74084 * 13 12 11 16 16 H 1.08999 * 109.46281 * 58.27460 * 15 13 12 17 17 C 1.52997 * 109.45266 * 178.24823 * 15 13 12 18 18 C 1.53040 * 109.52249 * 298.25905 * 15 13 12 19 19 C 1.55155 * 102.94571 * 218.39122 * 4 2 1 20 20 C 1.54912 * 101.57968 * 35.50272 * 19 4 2 21 21 N 1.47024 * 109.88112 * 121.09472 * 2 1 3 22 22 C 1.36941 * 125.64618 * 298.62174 * 21 2 1 23 23 H 1.08001 * 120.00063 * 359.71616 * 22 21 2 24 24 C 1.38810 * 119.99930 * 179.71580 * 22 21 2 25 25 N 1.31617 * 120.00219 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00125 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47105 * 89.99764 * 26 24 22 28 28 H 1.48498 * 109.47318 * 210.00148 * 26 24 22 29 29 H 1.48496 * 109.46962 * 329.99931 * 26 24 22 30 30 H 1.08993 * 109.46793 * 300.36247 * 1 2 3 31 31 H 1.09005 * 109.46593 * 60.35810 * 1 2 3 32 32 H 1.08995 * 109.46984 * 180.35793 * 1 2 3 33 33 H 0.97001 * 119.99810 * 19.97892 * 6 4 2 34 34 H 1.08996 * 109.50447 * 297.49692 * 11 9 7 35 35 H 1.08997 * 109.50727 * 57.61727 * 11 9 7 36 36 H 1.08998 * 109.45993 * 180.79969 * 12 11 9 37 37 H 1.09000 * 109.45240 * 60.83159 * 12 11 9 38 38 H 1.09000 * 109.46985 * 295.79040 * 14 13 12 39 39 H 1.09004 * 109.47447 * 55.78778 * 14 13 12 40 40 H 1.08998 * 109.47525 * 175.78861 * 14 13 12 41 41 H 1.09010 * 109.46613 * 180.02562 * 17 15 13 42 42 H 1.08995 * 109.47297 * 300.04500 * 17 15 13 43 43 H 1.08991 * 109.47521 * 60.05159 * 17 15 13 44 44 H 1.09001 * 109.50208 * 299.23707 * 18 15 13 45 45 H 1.08996 * 109.49981 * 179.12038 * 18 15 13 46 46 H 1.08997 * 111.00368 * 277.43464 * 19 4 2 47 47 H 1.08989 * 111.00661 * 153.57593 * 19 4 2 48 48 H 1.09002 * 110.36496 * 204.15483 * 20 19 4 49 49 H 1.08995 * 110.46379 * 81.87851 * 20 19 4 50 50 H 0.97004 * 120.00482 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4556 0.1959 -2.2875 7 6 2.5560 -0.2161 -3.5668 8 8 2.3143 -1.3696 -3.8530 9 6 2.9687 0.7564 -4.6414 10 1 2.2535 1.5778 -4.6836 11 6 4.3628 1.3058 -4.3264 12 6 4.8017 2.2455 -5.4517 13 7 4.8208 1.5124 -6.7239 14 6 5.3695 2.3447 -7.8029 15 6 3.4831 1.0158 -7.0709 16 1 2.7896 1.8544 -7.1345 17 6 3.5403 0.2980 -8.4208 18 6 3.0049 0.0393 -5.9939 19 6 3.2877 -1.5143 -0.6923 20 6 2.8145 -1.8794 0.7369 21 7 2.0300 -0.7141 1.1840 22 6 1.8001 -0.3588 2.4863 23 1 1.2092 0.5169 2.7110 24 6 2.3264 -1.1242 3.5178 25 7 3.0469 -2.1911 3.2441 26 14 2.0123 -0.6401 5.2944 27 1 0.7698 -1.2968 5.7741 28 1 3.1572 -1.0726 6.1353 29 1 1.8600 0.8342 5.3861 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.6486 1.1185 -2.0586 34 1 4.3337 1.8541 -3.3849 35 1 5.0697 0.4800 -4.2455 36 1 5.7998 2.6273 -5.2375 37 1 4.1019 3.0782 -5.5229 38 1 4.7132 3.1981 -7.9731 39 1 6.3607 2.6993 -7.5201 40 1 5.4419 1.7543 -8.7163 41 1 2.5473 -0.0703 -8.6787 42 1 3.8809 0.9934 -9.1879 43 1 4.2333 -0.5408 -8.3572 44 1 3.6904 -0.8064 -5.9392 45 1 2.0056 -0.3170 -6.2437 46 1 4.1654 -0.8689 -0.6602 47 1 3.4852 -2.4111 -1.2794 48 1 3.6716 -2.0338 1.3924 49 1 2.1891 -2.7719 0.7149 50 1 3.4145 -2.7263 3.9649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088816474.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:14 Heat of formation + Delta-G solvation = -16.091425 kcal Electronic energy + Delta-G solvation = -26766.077795 eV Core-core repulsion = 23214.356233 eV Total energy + Delta-G solvation = -3551.721562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33624 -38.87418 -37.45578 -34.11640 -33.77361 -32.63030 -31.89226 -30.35975 -28.73331 -27.81220 -26.72540 -24.84906 -23.99576 -23.22371 -22.30074 -20.48571 -20.08999 -19.94402 -19.32843 -16.88249 -16.74311 -16.17690 -15.82143 -15.56262 -14.99832 -14.81163 -14.58428 -14.28515 -13.92339 -13.90149 -13.38141 -13.23131 -12.88565 -12.72461 -12.45491 -12.29343 -12.13171 -12.07817 -11.96101 -11.91670 -11.55928 -11.37893 -11.13407 -11.04527 -10.86917 -10.83075 -10.77354 -10.63559 -10.48420 -10.37121 -10.09130 -9.75429 -9.60209 -9.40503 -8.67311 -8.58922 -8.56193 -6.87417 -5.65554 -3.08422 2.84787 3.37890 3.39753 3.45011 3.46355 3.60144 4.44941 4.47450 4.53240 4.65591 4.77636 4.96037 5.00485 5.12222 5.14189 5.26308 5.27424 5.29305 5.41835 5.42519 5.46375 5.53122 5.56057 5.57346 5.65253 5.66046 5.75394 5.83284 5.84843 5.95626 6.01470 6.13052 6.24495 6.27110 6.32257 6.38170 6.56766 6.62669 6.74670 6.80283 6.84562 6.88123 7.13478 7.53238 7.62404 7.78874 7.85855 8.34809 8.48317 9.20483 9.81492 10.45596 11.37819 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.030469 B = 0.002725 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.746274 B =10270.881436 C =10470.376488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.135 3.865 5 H 0.090 0.910 6 N -0.716 5.716 7 C 0.517 3.483 8 O -0.542 6.542 9 C -0.108 4.108 10 H 0.090 0.910 11 C -0.108 4.108 12 C 0.058 3.942 13 N -0.539 5.539 14 C 0.022 3.978 15 C 0.081 3.919 16 H 0.039 0.961 17 C -0.148 4.148 18 C -0.090 4.090 19 C -0.151 4.151 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.396 0.604 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.108 0.892 49 H 0.014 0.986 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 9.979 -21.095 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.108 0.892 6 N -0.366 5.366 7 C 0.303 3.697 8 O -0.419 6.419 9 C -0.130 4.130 10 H 0.109 0.891 11 C -0.146 4.146 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.126 4.126 15 C -0.027 4.027 16 H 0.057 0.943 17 C -0.205 4.205 18 C -0.128 4.128 19 C -0.191 4.191 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.349 4.349 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.744 3.256 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.230 0.770 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.126 0.874 49 H 0.032 0.968 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.664 8.660 -20.999 22.870 hybrid contribution -0.732 1.416 1.013 1.889 sum 1.932 10.076 -19.986 22.465 Atomic orbital electron populations 1.22242 0.97967 1.01379 0.99890 1.20989 0.92515 0.94754 0.87008 0.94741 1.22123 0.97557 0.90848 0.86403 0.89217 1.46100 1.69331 1.13904 1.07243 1.20468 0.77084 0.88900 0.83280 1.90688 1.49760 1.19226 1.82182 1.21393 0.98548 0.98157 0.94884 0.89144 1.21590 0.95262 0.99977 0.97816 1.22073 1.01111 0.94522 0.89235 1.61940 1.23334 1.38367 1.02801 1.22417 0.99488 0.95568 0.95152 1.21664 0.88806 0.96723 0.95515 0.94273 1.21908 1.02347 1.00911 0.95369 1.21441 1.02346 0.97932 0.91091 1.23373 0.96751 0.99361 0.99637 1.21937 0.97310 0.88340 0.89602 1.44501 1.59175 1.28318 1.00044 1.19015 1.27201 1.08122 0.80530 0.90495 1.24789 1.00377 0.97393 0.98039 1.69804 1.39128 1.17786 1.30166 0.86086 0.77260 0.77688 0.84525 1.21656 1.21669 1.20740 0.92721 0.94399 0.92954 0.76962 0.90741 0.90215 0.90301 0.94784 0.95875 0.91477 0.90900 0.92018 0.92526 0.91533 0.90049 0.90817 0.92050 0.92023 0.87435 0.96810 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16 2 C 0.16 3.11 3.48 -66.95 -0.23 2.88 16 3 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 4 C 0.14 2.48 2.76 -66.10 -0.18 2.29 16 5 H 0.09 1.78 7.41 -51.93 -0.38 1.40 16 6 N -0.72 -10.41 5.11 -52.03 -0.27 -10.67 16 7 C 0.52 7.58 7.15 -10.99 -0.08 7.50 16 8 O -0.54 -10.10 15.71 5.56 0.09 -10.01 16 9 C -0.11 -1.16 2.59 -91.65 -0.24 -1.40 16 10 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -1.03 5.26 -26.65 -0.14 -1.17 16 12 C 0.06 0.49 5.46 -3.83 -0.02 0.47 16 13 N -0.54 -4.84 4.75 -234.93 -1.11 -5.95 16 14 C 0.02 0.15 9.05 60.07 0.54 0.70 16 15 C 0.08 0.72 2.44 -67.72 -0.17 0.56 16 16 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 17 C -0.15 -1.14 8.77 37.16 0.33 -0.82 16 18 C -0.09 -0.98 3.96 -26.65 -0.11 -1.08 16 19 C -0.15 -3.05 6.77 -24.58 -0.17 -3.22 16 20 C 0.15 3.76 5.88 -2.53 -0.01 3.74 16 21 N -0.60 -14.82 3.13 -162.57 -0.51 -15.33 16 22 C -0.22 -5.98 9.86 -15.06 -0.15 -6.13 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 25 N -0.92 -26.68 10.09 55.49 0.56 -26.12 16 26 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.05 1.04 8.02 -51.93 -0.42 0.63 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.40 4.79 7.80 -40.82 -0.32 4.47 16 34 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.07 0.47 6.21 -51.93 -0.32 0.15 16 41 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.06 0.37 6.32 -51.93 -0.33 0.05 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.22 8.14 -51.94 -0.42 0.80 16 48 H 0.11 2.95 5.89 -51.93 -0.31 2.64 16 49 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -31.08 380.92 -10.08 -41.16 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -9.17 Total: 2.95 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.38 Total: 1.39 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -1.33 Total: -58.08 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.08 -10.08 -41.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088816474.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.070 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds