Wall clock time and date at job start Fri Apr 10 2020 18:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87607 * 2 1 4 4 C 1.54325 * 109.88027 * 238.98546 * 2 1 3 5 5 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 6 6 N 1.46501 * 110.87209 * 99.95762 * 4 2 1 7 7 C 1.34781 * 119.99799 * 200.06518 * 6 4 2 8 8 O 1.21287 * 119.99696 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99856 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.46824 * 179.97438 * 9 7 6 11 11 C 1.53119 * 109.52394 * 294.87245 * 10 9 7 12 12 C 1.53045 * 109.27367 * 182.50708 * 11 10 9 13 13 N 1.46846 * 109.57724 * 59.08628 * 12 11 10 14 14 C 1.46906 * 111.00009 * 174.19347 * 13 12 11 15 15 C 1.46850 * 111.19534 * 298.28889 * 13 12 11 16 16 C 1.53029 * 109.52325 * 61.74356 * 15 13 12 17 17 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 18 18 C 1.54918 * 101.58155 * 35.49936 * 17 4 2 19 19 N 1.47015 * 109.88603 * 121.17695 * 2 1 3 20 20 C 1.36938 * 125.64814 * 298.31439 * 19 2 1 21 21 H 1.08000 * 120.00302 * 359.97438 * 20 19 2 22 22 C 1.38815 * 119.99963 * 179.97438 * 20 19 2 23 23 N 1.31611 * 120.00219 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99684 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47294 * 60.00040 * 24 22 20 26 26 H 1.48498 * 109.46909 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47189 * 299.99757 * 24 22 20 28 28 H 1.08997 * 109.46797 * 181.01783 * 1 2 3 29 29 H 1.09003 * 109.47122 * 301.01216 * 1 2 3 30 30 H 1.08997 * 109.47254 * 61.01388 * 1 2 3 31 31 H 0.96998 * 120.00513 * 20.05920 * 6 4 2 32 32 H 1.09000 * 109.47117 * 299.99631 * 9 7 6 33 33 H 1.09008 * 109.47131 * 60.00078 * 9 7 6 34 34 H 1.08992 * 109.52516 * 55.00538 * 10 9 7 35 35 H 1.09001 * 109.50368 * 302.38066 * 11 10 9 36 36 H 1.08996 * 109.50362 * 62.50197 * 11 10 9 37 37 H 1.08997 * 109.41012 * 299.06698 * 12 11 10 38 38 H 1.09004 * 109.45044 * 179.12501 * 12 11 10 39 39 H 1.08996 * 109.46909 * 184.20820 * 14 13 12 40 40 H 1.09002 * 109.46392 * 304.20629 * 14 13 12 41 41 H 1.08997 * 109.46985 * 64.20935 * 14 13 12 42 42 H 1.09003 * 109.46260 * 301.72606 * 15 13 12 43 43 H 1.09000 * 109.45188 * 181.75333 * 15 13 12 44 44 H 1.08999 * 109.50372 * 180.87808 * 16 15 13 45 45 H 1.08999 * 109.54118 * 60.78101 * 16 15 13 46 46 H 1.09001 * 111.00846 * 153.57645 * 17 4 2 47 47 H 1.09000 * 111.00346 * 277.43176 * 17 4 2 48 48 H 1.08999 * 110.35942 * 81.82689 * 18 17 4 49 49 H 1.08996 * 110.36556 * 204.15522 * 18 17 4 50 50 H 0.97005 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3051 -1.4436 -1.6203 6 7 2.4549 0.1963 -2.2902 7 6 2.5528 -0.2172 -3.5693 8 8 2.3102 -1.3710 -3.8538 9 6 2.9638 0.7540 -4.6457 10 6 2.9974 0.0347 -5.9957 11 6 4.0938 -1.0340 -5.9790 12 6 4.1643 -1.7069 -7.3517 13 7 4.4526 -0.6986 -8.3797 14 6 4.6635 -1.3282 -9.6902 15 6 3.3885 0.3112 -8.4461 16 6 3.2959 1.0454 -7.1067 17 6 3.2876 -1.5133 -0.6946 18 6 2.8146 -1.8804 0.7341 19 7 2.0300 -0.7157 1.1828 20 6 1.8052 -0.3590 2.4857 21 1 1.2152 0.5169 2.7117 22 6 2.3356 -1.1233 3.5160 23 7 3.0541 -2.1910 3.2407 24 14 2.0294 -0.6362 5.2932 25 1 0.5689 -0.6360 5.5618 26 1 2.6989 -1.6076 6.1950 27 1 2.5775 0.7225 5.5356 28 1 -0.3633 -1.0275 0.0183 29 1 -0.3633 0.5295 0.8808 30 1 -0.3633 0.4980 -0.8989 31 1 2.6492 1.1189 -2.0626 32 1 2.2469 1.5740 -4.6883 33 1 3.9545 1.1488 -4.4200 34 1 2.0323 -0.4363 -6.1816 35 1 5.0530 -0.5679 -5.7535 36 1 3.8633 -1.7799 -5.2184 37 1 3.2097 -2.1855 -7.5700 38 1 4.9546 -2.4577 -7.3478 39 1 4.9484 -0.5676 -10.4170 40 1 5.4567 -2.0718 -9.6124 41 1 3.7419 -1.8124 -10.0131 42 1 2.4374 -0.1769 -8.6593 43 1 3.6153 1.0259 -9.2372 44 1 2.4956 1.7841 -7.1512 45 1 4.2417 1.5457 -6.8990 46 1 3.4852 -2.4093 -1.2831 47 1 4.1653 -0.8679 -0.6617 48 1 2.1886 -2.7724 0.7089 49 1 3.6717 -2.0357 1.3893 50 1 3.4251 -2.7249 3.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088899644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:19 Heat of formation + Delta-G solvation = -20.713302 kcal Electronic energy + Delta-G solvation = -26394.791481 eV Core-core repulsion = 22842.869499 eV Total energy + Delta-G solvation = -3551.921982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.07756 -38.88871 -37.51122 -34.58082 -33.94601 -32.04357 -30.98276 -30.39686 -29.69070 -28.39701 -25.87346 -24.39247 -23.97818 -23.32411 -22.20901 -20.50020 -20.08140 -19.81702 -19.43013 -16.88318 -16.67180 -16.00059 -15.86819 -15.35083 -15.18338 -14.82339 -14.63818 -14.29965 -14.00808 -13.81111 -13.52936 -13.19553 -12.91590 -12.76000 -12.59162 -12.39718 -12.14961 -12.11816 -11.76787 -11.66615 -11.55671 -11.30900 -11.14233 -10.85991 -10.83224 -10.79209 -10.67468 -10.45996 -10.41902 -10.36052 -10.12363 -9.75074 -9.59546 -9.39212 -8.67315 -8.56534 -8.55967 -6.87941 -5.65684 -3.08670 2.86394 3.38846 3.40703 3.44766 3.46204 3.72111 4.47446 4.54504 4.62268 4.67277 4.86982 5.01280 5.07643 5.15609 5.25618 5.31127 5.33385 5.39781 5.41823 5.43240 5.49119 5.56116 5.57677 5.62604 5.65070 5.72695 5.78604 5.84499 5.87422 5.97830 6.12636 6.24515 6.27720 6.31413 6.33585 6.40161 6.56560 6.62760 6.73575 6.83642 6.87352 6.88782 7.13434 7.52346 7.61793 7.79518 7.85345 8.34600 8.49406 9.20237 9.81226 10.45285 11.37540 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.037374 B = 0.002468 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.014098 B =11343.999896 C =11739.194757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.136 3.864 5 H 0.089 0.911 6 N -0.718 5.718 7 C 0.511 3.489 8 O -0.542 6.542 9 C -0.137 4.137 10 C -0.071 4.071 11 C -0.117 4.117 12 C 0.057 3.943 13 N -0.545 5.545 14 C 0.025 3.975 15 C 0.057 3.943 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.397 0.603 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.023 0.977 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.014 0.986 49 H 0.109 0.891 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 6.456 -22.402 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.107 0.893 6 N -0.368 5.368 7 C 0.297 3.703 8 O -0.419 6.419 9 C -0.177 4.177 10 C -0.090 4.090 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.270 5.270 14 C -0.124 4.124 15 C -0.071 4.071 16 C -0.151 4.151 17 C -0.192 4.192 18 C 0.028 3.972 19 N -0.320 5.320 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.231 0.769 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.032 0.968 49 H 0.126 0.874 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.902 5.767 -22.231 23.046 hybrid contribution -0.925 0.273 0.819 1.265 sum 0.977 6.040 -21.413 22.269 Atomic orbital electron populations 1.22243 0.97977 1.01399 0.99847 1.20981 0.92533 0.94759 0.87012 0.94736 1.22104 0.97513 0.90861 0.86426 0.89256 1.46131 1.69405 1.13975 1.07311 1.20611 0.77171 0.89168 0.83348 1.90653 1.49762 1.19345 1.82165 1.21740 1.03484 0.98458 0.93992 1.20928 1.00130 0.95630 0.92317 1.21780 0.98308 0.98907 0.96454 1.22100 0.99596 0.93476 0.91868 1.61966 1.44051 1.15060 1.05894 1.22345 1.00191 0.99179 0.90646 1.22063 0.92442 0.94588 0.98037 1.21665 1.02166 0.97508 0.93725 1.23380 0.96769 0.99327 0.99675 1.21949 0.97314 0.88350 0.89615 1.44480 1.59270 1.28220 1.00052 1.18973 1.27279 1.08142 0.80539 0.90536 1.24792 1.00377 0.97375 0.98057 1.69787 1.39079 1.17741 1.30316 0.86160 0.77636 0.77414 0.84308 1.21235 1.21587 1.21186 0.92966 0.92754 0.94386 0.76915 0.89123 0.88925 0.90738 0.91732 0.89160 0.94920 0.90908 0.91533 0.91413 0.95851 0.95002 0.90937 0.91500 0.90942 0.92047 0.92092 0.96830 0.87384 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.13 37.16 0.34 -2.53 16 2 C 0.16 3.10 3.48 -66.96 -0.23 2.86 16 3 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 4 C 0.14 2.45 2.75 -66.09 -0.18 2.27 16 5 H 0.09 1.75 7.40 -51.93 -0.38 1.36 16 6 N -0.72 -10.19 5.21 -52.03 -0.27 -10.46 16 7 C 0.51 7.11 7.56 -10.98 -0.08 7.02 16 8 O -0.54 -9.47 13.71 5.55 0.08 -9.39 16 9 C -0.14 -1.33 5.18 -27.88 -0.14 -1.47 16 10 C -0.07 -0.72 1.90 -90.49 -0.17 -0.89 16 11 C -0.12 -1.32 5.09 -26.65 -0.14 -1.45 16 12 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 13 N -0.54 -5.20 4.91 -242.95 -1.19 -6.39 16 14 C 0.02 0.19 9.59 60.07 0.58 0.77 16 15 C 0.06 0.48 5.46 -3.84 -0.02 0.46 16 16 C -0.11 -0.92 5.38 -26.65 -0.14 -1.07 16 17 C -0.15 -3.02 6.77 -24.58 -0.17 -3.19 16 18 C 0.15 3.73 5.89 -2.52 -0.01 3.72 16 19 N -0.60 -14.80 3.13 -162.57 -0.51 -15.31 16 20 C -0.22 -6.00 9.89 -15.06 -0.15 -6.14 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 24 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 4.65 8.32 -40.82 -0.34 4.31 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.25 6.02 -51.93 -0.31 0.93 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 41 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.11 2.96 5.88 -51.93 -0.31 2.65 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -30.81 382.69 -10.54 -41.35 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -9.30 Total: 3.17 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.65 Total: 0.53 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -1.41 Total: -58.26 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.81 -10.54 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088899644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.639 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds