Wall clock time and date at job start Fri Apr 10 2020 18:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87607 * 2 1 4 4 C 1.54325 * 109.88027 * 238.98546 * 2 1 3 5 5 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 6 6 N 1.46501 * 110.87209 * 99.95762 * 4 2 1 7 7 C 1.34781 * 119.99799 * 200.06518 * 6 4 2 8 8 O 1.21287 * 119.99696 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99856 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.46824 * 179.97438 * 9 7 6 11 11 C 1.53119 * 109.52394 * 294.87245 * 10 9 7 12 12 C 1.53045 * 109.27367 * 182.50708 * 11 10 9 13 13 N 1.46846 * 109.57724 * 59.08628 * 12 11 10 14 14 C 1.46906 * 111.00009 * 174.19347 * 13 12 11 15 15 C 1.46850 * 111.19534 * 298.28889 * 13 12 11 16 16 C 1.53029 * 109.52325 * 61.74356 * 15 13 12 17 17 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 18 18 C 1.54918 * 101.58155 * 35.49936 * 17 4 2 19 19 N 1.47015 * 109.88603 * 121.17695 * 2 1 3 20 20 C 1.36938 * 125.64814 * 298.31439 * 19 2 1 21 21 H 1.08000 * 120.00302 * 359.97438 * 20 19 2 22 22 C 1.38815 * 119.99963 * 179.97438 * 20 19 2 23 23 N 1.31611 * 120.00219 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99684 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47294 * 60.00040 * 24 22 20 26 26 H 1.48498 * 109.46909 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47189 * 299.99757 * 24 22 20 28 28 H 1.08997 * 109.46797 * 181.01783 * 1 2 3 29 29 H 1.09003 * 109.47122 * 301.01216 * 1 2 3 30 30 H 1.08997 * 109.47254 * 61.01388 * 1 2 3 31 31 H 0.96998 * 120.00513 * 20.05920 * 6 4 2 32 32 H 1.09000 * 109.47117 * 299.99631 * 9 7 6 33 33 H 1.09008 * 109.47131 * 60.00078 * 9 7 6 34 34 H 1.08992 * 109.52516 * 55.00538 * 10 9 7 35 35 H 1.09001 * 109.50368 * 302.38066 * 11 10 9 36 36 H 1.08996 * 109.50362 * 62.50197 * 11 10 9 37 37 H 1.08997 * 109.41012 * 299.06698 * 12 11 10 38 38 H 1.09004 * 109.45044 * 179.12501 * 12 11 10 39 39 H 1.08996 * 109.46909 * 184.20820 * 14 13 12 40 40 H 1.09002 * 109.46392 * 304.20629 * 14 13 12 41 41 H 1.08997 * 109.46985 * 64.20935 * 14 13 12 42 42 H 1.09003 * 109.46260 * 301.72606 * 15 13 12 43 43 H 1.09000 * 109.45188 * 181.75333 * 15 13 12 44 44 H 1.08999 * 109.50372 * 180.87808 * 16 15 13 45 45 H 1.08999 * 109.54118 * 60.78101 * 16 15 13 46 46 H 1.09001 * 111.00846 * 153.57645 * 17 4 2 47 47 H 1.09000 * 111.00346 * 277.43176 * 17 4 2 48 48 H 1.08999 * 110.35942 * 81.82689 * 18 17 4 49 49 H 1.08996 * 110.36556 * 204.15522 * 18 17 4 50 50 H 0.97005 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3051 -1.4436 -1.6203 6 7 2.4549 0.1963 -2.2902 7 6 2.5528 -0.2172 -3.5693 8 8 2.3102 -1.3710 -3.8538 9 6 2.9638 0.7540 -4.6457 10 6 2.9974 0.0347 -5.9957 11 6 4.0938 -1.0340 -5.9790 12 6 4.1643 -1.7069 -7.3517 13 7 4.4526 -0.6986 -8.3797 14 6 4.6635 -1.3282 -9.6902 15 6 3.3885 0.3112 -8.4461 16 6 3.2959 1.0454 -7.1067 17 6 3.2876 -1.5133 -0.6946 18 6 2.8146 -1.8804 0.7341 19 7 2.0300 -0.7157 1.1828 20 6 1.8052 -0.3590 2.4857 21 1 1.2152 0.5169 2.7117 22 6 2.3356 -1.1233 3.5160 23 7 3.0541 -2.1910 3.2407 24 14 2.0294 -0.6362 5.2932 25 1 0.5689 -0.6360 5.5618 26 1 2.6989 -1.6076 6.1950 27 1 2.5775 0.7225 5.5356 28 1 -0.3633 -1.0275 0.0183 29 1 -0.3633 0.5295 0.8808 30 1 -0.3633 0.4980 -0.8989 31 1 2.6492 1.1189 -2.0626 32 1 2.2469 1.5740 -4.6883 33 1 3.9545 1.1488 -4.4200 34 1 2.0323 -0.4363 -6.1816 35 1 5.0530 -0.5679 -5.7535 36 1 3.8633 -1.7799 -5.2184 37 1 3.2097 -2.1855 -7.5700 38 1 4.9546 -2.4577 -7.3478 39 1 4.9484 -0.5676 -10.4170 40 1 5.4567 -2.0718 -9.6124 41 1 3.7419 -1.8124 -10.0131 42 1 2.4374 -0.1769 -8.6593 43 1 3.6153 1.0259 -9.2372 44 1 2.4956 1.7841 -7.1512 45 1 4.2417 1.5457 -6.8990 46 1 3.4852 -2.4093 -1.2831 47 1 4.1653 -0.8679 -0.6617 48 1 2.1886 -2.7724 0.7089 49 1 3.6717 -2.0357 1.3893 50 1 3.4251 -2.7249 3.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088899644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:18 Heat of formation + Delta-G solvation = -40.898957 kcal Electronic energy + Delta-G solvation = -26395.666796 eV Core-core repulsion = 22842.869499 eV Total energy + Delta-G solvation = -3552.797297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18223 -39.91914 -38.96681 -35.64740 -35.24354 -33.81780 -32.06734 -31.72330 -30.92778 -29.84092 -26.94404 -25.97831 -25.57890 -24.07662 -23.11011 -22.09678 -21.49471 -20.98798 -20.53038 -18.70553 -17.90692 -17.33565 -16.75317 -16.60853 -16.23997 -15.97830 -15.75102 -15.56840 -15.37199 -15.16174 -14.73234 -14.38075 -14.02622 -14.00253 -13.77788 -13.70568 -13.26569 -13.23085 -13.04565 -12.93838 -12.76548 -12.64553 -12.58996 -12.35685 -12.21314 -12.08276 -12.05005 -11.99242 -11.58083 -11.57186 -11.45369 -11.42803 -11.17220 -10.72554 -10.55244 -9.92557 -9.28543 -8.89857 -7.74369 -5.19576 1.48215 1.51187 1.57358 1.76898 2.23773 2.53627 3.03644 3.35868 3.57304 3.76709 3.85814 3.86860 3.89534 3.98616 4.12296 4.22850 4.27485 4.37036 4.45815 4.50280 4.54748 4.62907 4.63630 4.68589 4.71097 4.71752 4.81394 4.82040 4.92754 4.94286 4.95718 5.01234 5.03917 5.07556 5.14698 5.16443 5.25063 5.35937 5.42557 5.50088 5.55246 5.59903 5.69684 5.80204 6.12674 6.18194 6.30667 6.69247 7.11269 7.39907 7.79446 8.43244 9.27429 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.037374 B = 0.002468 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.014098 B =11343.999896 C =11739.194757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.054 0.946 4 C 0.154 3.846 5 H 0.074 0.926 6 N -0.709 5.709 7 C 0.508 3.492 8 O -0.580 6.580 9 C -0.126 4.126 10 C -0.069 4.069 11 C -0.114 4.114 12 C 0.060 3.940 13 N -0.553 5.553 14 C 0.023 3.977 15 C 0.053 3.947 16 C -0.105 4.105 17 C -0.137 4.137 18 C 0.157 3.843 19 N -0.614 5.614 20 C -0.227 4.227 21 H 0.086 0.914 22 C -0.071 4.071 23 N -0.952 5.952 24 Si 0.979 3.021 25 H -0.280 1.280 26 H -0.298 1.298 27 H -0.274 1.274 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.022 0.978 42 H 0.025 0.975 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.069 0.931 48 H -0.018 1.018 49 H 0.076 0.924 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 9.503 -24.034 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.071 0.929 4 C 0.048 3.952 5 H 0.092 0.908 6 N -0.360 5.360 7 C 0.297 3.703 8 O -0.460 6.460 9 C -0.165 4.165 10 C -0.088 4.088 11 C -0.152 4.152 12 C -0.068 4.068 13 N -0.278 5.278 14 C -0.125 4.125 15 C -0.075 4.075 16 C -0.143 4.143 17 C -0.177 4.177 18 C 0.032 3.968 19 N -0.339 5.339 20 C -0.356 4.356 21 H 0.104 0.896 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.200 1.200 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.250 0.750 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.043 0.957 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.000 1.000 49 H 0.094 0.906 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.720 8.875 -23.902 25.555 hybrid contribution -0.883 -0.703 1.246 1.681 sum 0.837 8.172 -22.656 24.100 Atomic orbital electron populations 1.22127 0.96634 1.00568 1.01242 1.21200 0.93461 0.95118 0.85831 0.92873 1.21622 0.95828 0.90979 0.86779 0.90817 1.45951 1.69391 1.14082 1.06622 1.21424 0.75910 0.89337 0.83654 1.90659 1.51252 1.21428 1.82683 1.21772 1.05360 0.97792 0.91594 1.20897 0.98532 0.95818 0.93569 1.21690 0.98862 0.98669 0.95987 1.22014 0.98943 0.93768 0.92066 1.62001 1.44430 1.14976 1.06358 1.22403 1.00264 0.99689 0.90095 1.22165 0.91850 0.94596 0.98898 1.21631 1.03190 0.97066 0.92405 1.23166 0.97846 0.99848 0.96794 1.21659 0.95625 0.87764 0.91765 1.44725 1.59747 1.28539 1.00921 1.19365 1.26434 1.08051 0.81750 0.89628 1.25638 1.00887 0.97732 1.02043 1.70045 1.40416 1.18905 1.30828 0.85135 0.77505 0.77145 0.79444 1.20602 1.22417 1.20013 0.94847 0.93401 0.90932 0.74956 0.85993 0.86774 0.92723 0.91507 0.92196 0.96170 0.90981 0.90106 0.91203 0.95941 0.95681 0.89262 0.89437 0.90344 0.92020 0.91281 0.99994 0.90574 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 9.13 71.98 0.66 -4.54 16 2 C 0.15 5.81 3.48 45.34 0.16 5.97 16 3 H 0.05 1.90 7.70 -2.38 -0.02 1.88 16 4 C 0.15 5.43 2.75 46.18 0.13 5.55 16 5 H 0.07 2.88 7.40 -2.39 -0.02 2.86 16 6 N -0.71 -18.39 5.21 -436.91 -2.27 -20.66 16 7 C 0.51 13.16 7.56 87.66 0.66 13.82 16 8 O -0.58 -20.14 13.71 -3.05 -0.04 -20.18 16 9 C -0.13 -2.02 5.18 29.85 0.15 -1.87 16 10 C -0.07 -1.27 1.90 -10.71 -0.02 -1.29 16 11 C -0.11 -2.51 5.09 30.65 0.16 -2.35 16 12 C 0.06 1.23 5.46 86.33 0.47 1.70 16 13 N -0.55 -9.67 4.91 -922.57 -4.53 -14.20 16 14 C 0.02 0.33 9.59 127.69 1.22 1.55 16 15 C 0.05 0.77 5.46 86.32 0.47 1.24 16 16 C -0.11 -1.38 5.38 30.65 0.16 -1.22 16 17 C -0.14 -5.49 6.77 31.99 0.22 -5.28 16 18 C 0.16 7.99 5.89 86.86 0.51 8.51 16 19 N -0.61 -30.79 3.13 -668.26 -2.09 -32.87 16 20 C -0.23 -12.35 9.89 84.03 0.83 -11.52 16 21 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 23 N -0.95 -57.06 10.09 21.65 0.22 -56.84 16 24 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.41 8.15 8.32 -92.71 -0.77 7.38 16 32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.05 1.23 7.96 -2.39 -0.02 1.21 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.69 6.02 -2.39 -0.01 1.68 16 37 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 41 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 48 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 49 H 0.08 4.37 5.88 -2.39 -0.01 4.36 16 50 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -69.29 382.69 -0.32 -69.60 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.12 Total: 21.05 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.25 Total: 6.76 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -8.68 Total: -124.58 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.04 Total: -20.18 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.29 -0.32 -69.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088899644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.705 kcal (2) G-P(sol) polarization free energy of solvation -69.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds