Wall clock time and date at job start Fri Apr 10 2020 18:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.00209 * 2 1 4 4 C 1.54325 * 109.88248 * 238.90204 * 2 1 3 5 5 H 1.09004 * 110.87008 * 336.82630 * 4 2 1 6 6 N 1.46499 * 110.72028 * 100.02593 * 4 2 1 7 7 C 1.34778 * 120.00024 * 199.97842 * 6 4 2 8 8 O 1.21281 * 120.00007 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99712 * 180.02562 * 7 6 4 10 10 N 1.46903 * 109.47155 * 173.78234 * 9 7 6 11 11 C 1.46842 * 111.00413 * 169.42882 * 10 9 7 12 12 C 1.53036 * 109.52583 * 185.83636 * 11 10 9 13 13 C 1.53118 * 109.28377 * 300.82669 * 12 11 10 14 14 C 1.52990 * 109.52539 * 177.55731 * 13 12 11 15 15 C 1.53120 * 109.16014 * 57.64796 * 13 12 11 16 16 C 1.46847 * 110.99823 * 293.64327 * 10 9 7 17 17 C 1.55153 * 102.94398 * 218.39166 * 4 2 1 18 18 C 1.54902 * 101.58434 * 35.50021 * 17 4 2 19 19 N 1.47020 * 109.88368 * 121.09506 * 2 1 3 20 20 C 1.36939 * 125.64980 * 298.39303 * 19 2 1 21 21 H 1.07996 * 119.99532 * 359.97438 * 20 19 2 22 22 C 1.38815 * 120.00065 * 179.97438 * 20 19 2 23 23 N 1.31614 * 120.00081 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99879 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47172 * 90.00006 * 24 22 20 26 26 H 1.48501 * 109.46980 * 209.99957 * 24 22 20 27 27 H 1.48499 * 109.46913 * 329.99886 * 24 22 20 28 28 H 1.09005 * 109.47274 * 181.09875 * 1 2 3 29 29 H 1.08996 * 109.46971 * 301.09734 * 1 2 3 30 30 H 1.08996 * 109.47425 * 61.09959 * 1 2 3 31 31 H 0.97000 * 120.00317 * 19.97946 * 6 4 2 32 32 H 1.08994 * 109.47462 * 53.78567 * 9 7 6 33 33 H 1.09006 * 109.47295 * 293.77613 * 9 7 6 34 34 H 1.08999 * 109.46347 * 305.86087 * 11 10 9 35 35 H 1.09001 * 109.46130 * 65.82470 * 11 10 9 36 36 H 1.09003 * 109.50639 * 180.88037 * 12 11 10 37 37 H 1.09002 * 109.50198 * 60.76486 * 12 11 10 38 38 H 1.09008 * 109.51803 * 297.75013 * 13 12 11 39 39 H 1.08998 * 109.47116 * 300.31249 * 14 13 12 40 40 H 1.09003 * 109.47141 * 60.31686 * 14 13 12 41 41 H 1.09009 * 109.47098 * 180.31483 * 14 13 12 42 42 H 1.08999 * 109.50680 * 182.40541 * 15 13 12 43 43 H 1.09000 * 109.50006 * 62.28889 * 15 13 12 44 44 H 1.08995 * 109.46317 * 294.17405 * 16 10 9 45 45 H 1.09006 * 109.46502 * 54.14680 * 16 10 9 46 46 H 1.09007 * 111.00445 * 153.57506 * 17 4 2 47 47 H 1.09006 * 111.00402 * 277.38707 * 17 4 2 48 48 H 1.09006 * 110.36553 * 81.82999 * 18 17 4 49 49 H 1.08999 * 110.36958 * 204.04179 * 18 17 4 50 50 H 0.97002 * 120.00344 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3064 -1.4459 -1.6211 6 7 2.4554 0.1960 -2.2875 7 6 2.5558 -0.2161 -3.5668 8 8 2.3150 -1.3698 -3.8530 9 6 2.9685 0.7565 -4.6415 10 7 3.1472 0.0376 -5.9101 11 6 3.3029 0.9756 -7.0291 12 6 3.3405 0.1982 -8.3468 13 6 4.5100 -0.7897 -8.3179 14 6 4.5162 -1.6126 -9.6076 15 6 4.3491 -1.7240 -7.1155 16 6 4.2824 -0.8908 -5.8335 17 6 3.2876 -1.5143 -0.6924 18 6 2.8146 -1.8794 0.7368 19 7 2.0300 -0.7140 1.1839 20 6 1.8039 -0.3564 2.4863 21 1 1.2128 0.5191 2.7109 22 6 2.3344 -1.1191 3.5177 23 7 3.0543 -2.1863 3.2439 24 14 2.0253 -0.6315 5.2942 25 1 0.7850 -1.2887 5.7793 26 1 3.1734 -1.0612 6.1323 27 1 1.8717 0.8428 5.3833 28 1 -0.3634 -1.0275 0.0197 29 1 -0.3633 0.5308 0.8799 30 1 -0.3634 0.4966 -0.8996 31 1 2.6485 1.1186 -2.0587 32 1 3.9069 1.2335 -4.3590 33 1 2.1959 1.5162 -4.7602 34 1 2.4627 1.6698 -7.0407 35 1 4.2322 1.5325 -6.9095 36 1 3.4717 0.8934 -9.1760 37 1 2.4058 -0.3481 -8.4737 38 1 5.4479 -0.2412 -8.2300 39 1 3.5766 -2.1581 -9.6951 40 1 4.6308 -0.9467 -10.4629 41 1 5.3458 -2.3194 -9.5836 42 1 5.2010 -2.4021 -7.0648 43 1 3.4303 -2.3005 -7.2230 44 1 5.2071 -0.3252 -5.7194 45 1 4.1534 -1.5523 -4.9768 46 1 3.4851 -2.4112 -1.2796 47 1 4.1656 -0.8691 -0.6611 48 1 2.1886 -2.7715 0.7128 49 1 3.6717 -2.0358 1.3917 50 1 3.4253 -2.7191 3.9646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088939514.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:21 Heat of formation + Delta-G solvation = -16.549998 kcal Electronic energy + Delta-G solvation = -26463.047069 eV Core-core repulsion = 22911.305622 eV Total energy + Delta-G solvation = -3551.741447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.05096 -38.83924 -37.42069 -34.67653 -33.94385 -32.03202 -30.99432 -30.38788 -29.60376 -28.45436 -26.17190 -24.27509 -23.96491 -23.35267 -22.03246 -20.54183 -20.07869 -19.83668 -19.50765 -16.94101 -16.69614 -16.27575 -15.63508 -15.46681 -14.77068 -14.63891 -14.52646 -14.34561 -14.15914 -13.88084 -13.55413 -13.22828 -12.96045 -12.77309 -12.56521 -12.38512 -12.12422 -12.07301 -11.87555 -11.65375 -11.54611 -11.35080 -11.13354 -10.88974 -10.86710 -10.82648 -10.56294 -10.49843 -10.38817 -10.37351 -10.09479 -9.75126 -9.59992 -9.43740 -8.67487 -8.56906 -8.41243 -6.87727 -5.65833 -3.08709 2.87007 3.19700 3.39089 3.44005 3.45935 3.89076 4.47583 4.53654 4.58469 4.60852 4.83838 5.04011 5.10187 5.12096 5.21144 5.28271 5.33258 5.34197 5.42520 5.44338 5.44859 5.52525 5.56278 5.64792 5.65731 5.78321 5.83705 5.84491 5.91601 6.00292 6.06492 6.13148 6.26612 6.26774 6.32963 6.37698 6.55957 6.62907 6.73295 6.82415 6.88828 6.95714 7.14905 7.52554 7.62226 7.80778 7.85352 8.34441 8.51889 9.20245 9.81219 10.45275 11.37490 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.036465 B = 0.002519 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.666468 B =11114.475464 C =11517.504779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.138 3.862 5 H 0.090 0.910 6 N -0.719 5.719 7 C 0.511 3.489 8 O -0.523 6.523 9 C 0.036 3.964 10 N -0.519 5.519 11 C 0.056 3.944 12 C -0.110 4.110 13 C -0.096 4.096 14 C -0.145 4.145 15 C -0.108 4.108 16 C 0.053 3.947 17 C -0.152 4.152 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.396 0.604 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.014 0.986 49 H 0.108 0.892 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 6.884 -22.209 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.033 3.967 5 H 0.109 0.891 6 N -0.371 5.371 7 C 0.296 3.704 8 O -0.399 6.399 9 C -0.095 4.095 10 N -0.244 5.244 11 C -0.072 4.072 12 C -0.148 4.148 13 C -0.114 4.114 14 C -0.203 4.203 15 C -0.146 4.146 16 C -0.075 4.075 17 C -0.192 4.192 18 C 0.028 3.972 19 N -0.321 5.321 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.230 0.770 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.032 0.968 49 H 0.126 0.874 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.325 5.682 -22.275 23.105 hybrid contribution 0.564 1.213 1.256 1.835 sum 2.890 6.895 -21.019 22.308 Atomic orbital electron populations 1.22238 0.97900 1.01447 0.99873 1.20987 0.92570 0.94746 0.86968 0.94718 1.22104 0.97492 0.90777 0.86307 0.89149 1.46090 1.69870 1.13980 1.07153 1.20384 0.77859 0.89195 0.83000 1.90685 1.48480 1.18904 1.81782 1.21964 1.01854 0.95821 0.89869 1.61553 1.43045 1.18086 1.01700 1.22110 1.00130 0.93973 0.90962 1.21631 0.99298 0.97960 0.95889 1.21210 0.98340 0.96594 0.95279 1.21804 1.01926 0.99784 0.96762 1.21608 1.02427 0.97503 0.93091 1.22216 0.90023 0.95374 0.99879 1.23381 0.96761 0.99314 0.99715 1.21940 0.97329 0.88369 0.89573 1.44495 1.59235 1.28258 1.00066 1.19020 1.27092 1.08173 0.80532 0.90473 1.24793 1.00388 0.97413 0.98056 1.69798 1.39096 1.17871 1.30160 0.86083 0.77253 0.77700 0.84506 1.21642 1.21684 1.20733 0.92929 0.92766 0.94320 0.77022 0.92278 0.87950 0.90708 0.95028 0.91659 0.90893 0.91756 0.92518 0.92925 0.92775 0.91693 0.90786 0.95585 0.89051 0.92061 0.92163 0.96806 0.87406 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16 2 C 0.16 3.10 3.48 -66.95 -0.23 2.86 16 3 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 4 C 0.14 2.50 2.76 -66.10 -0.18 2.32 16 5 H 0.09 1.79 7.41 -51.93 -0.38 1.40 16 6 N -0.72 -10.33 5.20 -52.03 -0.27 -10.60 16 7 C 0.51 7.44 7.36 -10.99 -0.08 7.36 16 8 O -0.52 -9.67 14.43 5.56 0.08 -9.59 16 9 C 0.04 0.39 5.45 -4.98 -0.03 0.36 16 10 N -0.52 -5.92 4.35 -236.11 -1.03 -6.95 16 11 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 12 C -0.11 -0.89 5.38 -26.65 -0.14 -1.03 16 13 C -0.10 -0.79 2.79 -90.50 -0.25 -1.04 16 14 C -0.15 -1.04 9.20 37.15 0.34 -0.70 16 15 C -0.11 -1.10 5.38 -26.65 -0.14 -1.24 16 16 C 0.05 0.62 5.12 -3.83 -0.02 0.60 16 17 C -0.15 -3.03 6.77 -24.59 -0.17 -3.20 16 18 C 0.15 3.74 5.89 -2.53 -0.01 3.72 16 19 N -0.60 -14.80 3.13 -162.57 -0.51 -15.30 16 20 C -0.22 -5.96 9.89 -15.06 -0.15 -6.11 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 24 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.40 4.65 8.31 -40.82 -0.34 4.31 16 32 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.10 0.89 7.98 -51.93 -0.41 0.48 16 34 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 1.32 6.05 -51.93 -0.31 1.00 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -31.11 383.35 -10.56 -41.67 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -9.30 Total: 2.84 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.85 Total: 1.43 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -1.25 Total: -58.96 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.11 -10.56 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088939514.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.116 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds