Wall clock time and date at job start Fri Apr 10 2020 18:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 N 1.46891 * 109.47386 * 180.02562 * 3 2 1 5 5 C 1.46906 * 111.00339 * 66.04235 * 4 3 2 6 6 C 1.46898 * 111.00327 * 189.99602 * 4 3 2 7 7 C 1.50699 * 109.47132 * 169.99641 * 6 4 3 8 8 O 1.21274 * 120.00327 * 0.02562 * 7 6 4 9 9 N 1.34787 * 119.99759 * 180.02562 * 7 6 4 10 10 C 1.47068 * 121.16558 * 359.95347 * 9 7 6 11 11 C 1.52831 * 107.96080 * 122.73661 * 10 9 7 12 12 C 1.53095 * 110.57524 * 57.33746 * 11 10 9 13 13 H 1.09009 * 113.06523 * 71.00698 * 12 11 10 14 14 C 1.56031 * 106.39014 * 195.43075 * 12 11 10 15 15 C 1.54505 * 102.60765 * 78.36994 * 14 12 11 16 16 N 1.46660 * 107.02652 * 22.26912 * 15 14 12 17 17 C 1.36939 * 125.63804 * 182.11293 * 16 15 14 18 18 H 1.07995 * 120.00246 * 174.55126 * 17 16 15 19 19 C 1.38811 * 119.99669 * 354.54704 * 17 16 15 20 20 N 1.31623 * 120.00256 * 6.74778 * 19 17 16 21 21 Si 1.86805 * 119.99791 * 186.74989 * 19 17 16 22 22 H 1.48499 * 109.47018 * 94.98385 * 21 19 17 23 23 H 1.48497 * 109.47190 * 214.98589 * 21 19 17 24 24 H 1.48495 * 109.47210 * 334.98377 * 21 19 17 25 25 C 1.46467 * 108.29966 * 2.56945 * 16 15 14 26 26 H 1.08998 * 108.42086 * 88.75095 * 25 16 15 27 27 C 1.46761 * 121.21489 * 180.02562 * 9 7 6 28 28 H 1.08999 * 109.47146 * 59.99995 * 1 2 3 29 29 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47136 * 300.00599 * 1 2 3 31 31 H 1.08999 * 109.46996 * 239.99748 * 2 1 3 32 32 H 1.08996 * 109.46940 * 119.99539 * 2 1 3 33 33 H 1.09003 * 109.47346 * 59.99203 * 3 2 1 34 34 H 1.09005 * 109.46673 * 300.00173 * 3 2 1 35 35 H 1.08998 * 109.47183 * 183.95674 * 5 4 3 36 36 H 1.09001 * 109.46402 * 303.95994 * 5 4 3 37 37 H 1.08995 * 109.46939 * 63.95200 * 5 4 3 38 38 H 1.09006 * 109.46956 * 49.99662 * 6 4 3 39 39 H 1.09001 * 109.47402 * 290.00085 * 6 4 3 40 40 H 1.09007 * 109.77309 * 3.11971 * 10 9 7 41 41 H 1.08997 * 109.80680 * 242.37807 * 10 9 7 42 42 H 1.08999 * 109.26060 * 297.05790 * 11 10 9 43 43 H 1.09000 * 109.22774 * 177.60264 * 11 10 9 44 44 H 1.09003 * 110.78246 * 196.64946 * 14 12 11 45 45 H 1.08999 * 110.78256 * 319.90484 * 14 12 11 46 46 H 1.09004 * 109.90345 * 142.23394 * 15 14 12 47 47 H 1.08996 * 109.90468 * 263.29824 * 15 14 12 48 48 H 0.97005 * 119.99498 * 179.97438 * 20 19 17 49 49 H 1.08995 * 109.22715 * 112.19942 * 27 9 7 50 50 H 1.09001 * 109.22946 * 352.79542 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0349 0.8858 -1.2542 6 6 4.0355 2.7931 0.2374 7 6 5.5219 2.7182 0.4742 8 8 6.0870 1.6455 0.4468 9 7 6.2232 3.8435 0.7163 10 6 5.5642 5.1577 0.7543 11 6 5.8455 5.7867 2.1185 12 6 7.3533 5.8981 2.3589 13 1 7.8302 6.6558 1.7370 14 6 7.5373 6.1634 3.8855 15 6 7.3440 4.7581 4.4977 16 7 7.6185 3.7853 3.4351 17 6 7.5190 2.4246 3.5538 18 1 7.6576 1.7954 2.6871 19 6 7.2399 1.8543 4.7881 20 7 6.9401 2.6213 5.8149 21 14 7.2900 -0.0019 4.9920 22 1 8.6239 -0.4080 5.5027 23 1 6.2418 -0.4225 5.9562 24 1 7.0440 -0.6509 3.6793 25 6 8.0260 4.5184 2.2344 26 1 9.1066 4.6578 2.2661 27 6 7.6715 3.8016 0.9500 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 5.1223 0.8325 -1.2001 36 1 3.6291 -0.1144 -1.4060 37 1 3.7435 1.5263 -2.0866 38 1 3.5493 3.2235 1.1130 39 1 3.8372 3.4190 -0.6327 40 1 4.4894 5.0353 0.6195 41 1 5.9643 5.7944 -0.0347 42 1 5.4020 5.1676 2.8982 43 1 5.4015 6.7816 2.1534 44 1 8.5379 6.5420 4.0944 45 1 6.7792 6.8556 4.2518 46 1 8.0339 4.6178 5.3299 47 1 6.3170 4.6421 4.8437 48 1 6.7447 2.2225 6.6774 49 1 8.1835 4.2829 0.1168 50 1 7.9943 2.7627 1.0177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223978331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:44 Heat of formation + Delta-G solvation = 4.000512 kcal Electronic energy + Delta-G solvation = -27996.584081 eV Core-core repulsion = 24445.733770 eV Total energy + Delta-G solvation = -3550.850310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.01274 -38.47082 -36.96031 -34.92666 -33.18131 -32.75290 -31.16157 -29.61617 -28.35846 -27.68899 -26.92638 -24.57733 -24.05244 -22.73231 -22.46059 -20.74789 -19.93205 -19.48511 -18.13099 -16.85869 -16.51010 -15.76932 -15.51003 -15.36605 -14.88316 -14.55460 -14.28652 -14.14401 -13.90610 -13.81779 -13.27889 -13.14111 -12.87649 -12.61664 -12.48849 -12.07080 -11.94135 -11.85107 -11.65468 -11.53998 -11.39841 -11.23779 -11.17267 -11.07315 -10.85417 -10.71880 -10.62514 -10.57533 -10.02326 -9.80698 -9.75550 -9.59164 -9.44530 -9.12879 -8.43322 -8.17183 -8.00697 -6.69473 -5.57851 -2.89090 3.17802 3.40352 3.53918 3.59474 3.67933 4.07744 4.66221 4.82456 4.90094 4.98662 5.07770 5.16752 5.24547 5.30197 5.35687 5.39159 5.49340 5.51796 5.55819 5.57348 5.62000 5.71907 5.74625 5.76253 5.77482 5.83169 5.93627 6.01850 6.06952 6.11356 6.17808 6.20419 6.30159 6.33422 6.34558 6.48322 6.52870 6.67535 6.78397 6.98617 7.01585 7.16933 7.20741 7.67124 7.73542 7.98784 8.01166 8.38574 8.82046 9.38027 9.98305 10.61410 11.54368 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.005451 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.021281 B = 5135.774092 C = 6493.850958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.523 5.523 5 C 0.019 3.981 6 C 0.042 3.958 7 C 0.523 3.477 8 O -0.518 6.518 9 N -0.598 5.598 10 C 0.112 3.888 11 C -0.122 4.122 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.145 4.145 15 C 0.180 3.820 16 N -0.588 5.588 17 C -0.213 4.213 18 H 0.084 0.916 19 C -0.007 4.007 20 N -0.926 5.926 21 Si 0.902 3.098 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.154 3.846 26 H 0.026 0.974 27 C 0.116 3.884 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.014 0.986 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.248 0.752 49 H 0.052 0.948 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 6.185 -13.462 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.071 4.071 4 N -0.247 5.247 5 C -0.128 4.128 6 C -0.089 4.089 7 C 0.310 3.690 8 O -0.393 6.393 9 N -0.332 5.332 10 C -0.011 4.011 11 C -0.160 4.160 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.183 4.183 15 C 0.055 3.945 16 N -0.313 5.313 17 C -0.341 4.341 18 H 0.101 0.899 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.733 3.267 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.046 3.954 26 H 0.043 0.957 27 C -0.008 4.008 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.070 0.930 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.274 5.103 -12.921 16.170 hybrid contribution -0.318 -0.252 -0.240 0.471 sum -8.592 4.850 -13.161 16.448 Atomic orbital electron populations 1.21733 0.95772 1.01645 1.01602 1.21541 0.95059 0.96421 1.03012 1.22180 0.86952 0.97469 1.00490 1.61561 1.06795 1.20376 1.35944 1.22588 1.03137 0.99050 0.88074 1.21965 0.94211 0.90818 1.01868 1.20136 0.88468 0.83642 0.76786 1.90644 1.70927 1.27628 1.50059 1.47795 1.08788 1.06046 1.70563 1.21604 0.97095 0.84503 0.97939 1.21822 0.96720 1.00090 0.97408 1.22368 0.95235 0.97489 0.97037 0.90768 1.23183 1.00009 1.00128 0.94975 1.21077 1.00039 0.83080 0.90321 1.44122 1.78959 1.02022 1.06198 1.19104 1.40545 0.80261 0.94225 0.89875 1.24710 1.02127 0.97553 0.95869 1.69989 1.53758 1.32754 1.00911 0.86190 0.76938 0.85889 0.77664 1.21985 1.22083 1.20106 1.20705 0.96069 0.90403 0.88262 0.95668 1.21347 0.79522 1.03595 0.96289 0.93079 0.92624 0.92617 0.91975 0.90803 0.90761 0.95253 0.89227 0.91471 0.96713 0.88140 0.92822 0.90825 0.91960 0.90046 0.92175 0.92846 0.92402 0.94111 0.93996 0.94155 0.92962 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.37 5.87 -26.73 -0.16 -1.53 16 3 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 4 N -0.52 -7.99 4.50 -244.37 -1.10 -9.09 16 5 C 0.02 0.27 9.01 60.07 0.54 0.81 16 6 C 0.04 0.63 3.81 -4.98 -0.02 0.61 16 7 C 0.52 9.80 7.44 -10.98 -0.08 9.72 16 8 O -0.52 -11.78 13.77 5.56 0.08 -11.70 16 9 N -0.60 -10.31 2.96 -174.14 -0.52 -10.83 16 10 C 0.11 1.50 6.35 -3.82 -0.02 1.47 16 11 C -0.12 -1.84 5.04 -26.77 -0.13 -1.97 16 12 C -0.10 -1.66 3.68 -88.43 -0.33 -1.98 16 13 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 14 C -0.14 -2.62 6.32 -24.32 -0.15 -2.77 16 15 C 0.18 4.31 4.58 -3.17 -0.01 4.29 16 16 N -0.59 -14.64 3.13 -165.02 -0.52 -15.16 16 17 C -0.21 -6.05 9.71 -15.06 -0.15 -6.20 16 18 H 0.08 2.44 6.49 -52.49 -0.34 2.10 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.93 -27.88 10.36 55.49 0.57 -27.31 16 21 Si 0.90 23.90 29.56 -169.99 -5.02 18.88 16 22 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 25 C 0.15 3.07 3.00 -68.28 -0.21 2.87 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 C 0.12 2.16 5.67 -4.75 -0.03 2.13 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.68 6.47 -51.93 -0.34 0.34 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 34 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.09 1.50 5.88 -51.93 -0.31 1.19 16 36 H 0.07 0.86 6.30 -51.93 -0.33 0.54 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 39 H 0.05 0.65 7.88 -51.93 -0.41 0.24 16 40 H 0.07 0.83 6.01 -51.92 -0.31 0.52 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.55 6.84 -51.93 -0.36 1.19 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.95 7.98 -51.93 -0.41 0.53 16 46 H 0.04 1.10 7.46 -51.93 -0.39 0.72 16 47 H 0.04 1.12 7.13 -51.93 -0.37 0.75 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 2.09 5.56 -51.93 -0.29 1.80 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -33.30 371.93 -10.25 -43.55 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.86 Total: -0.78 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.49 Total: 6.84 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -1.56 Total: -62.39 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.02 Total: 18.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.30 -10.25 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223978331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.552 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds