Wall clock time and date at job start Fri Apr 10 2020 18:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 N 1.46891 * 109.47386 * 180.02562 * 3 2 1 5 5 C 1.46906 * 111.00339 * 66.04235 * 4 3 2 6 6 C 1.46898 * 111.00327 * 189.99602 * 4 3 2 7 7 C 1.50699 * 109.47132 * 169.99641 * 6 4 3 8 8 O 1.21274 * 120.00327 * 0.02562 * 7 6 4 9 9 N 1.34787 * 119.99759 * 180.02562 * 7 6 4 10 10 C 1.47068 * 121.16558 * 359.95347 * 9 7 6 11 11 C 1.52831 * 107.96080 * 122.73661 * 10 9 7 12 12 C 1.53095 * 110.57524 * 57.33746 * 11 10 9 13 13 H 1.09009 * 113.06523 * 71.00698 * 12 11 10 14 14 C 1.56031 * 106.39014 * 195.43075 * 12 11 10 15 15 C 1.54505 * 102.60765 * 78.36994 * 14 12 11 16 16 N 1.46660 * 107.02652 * 22.26912 * 15 14 12 17 17 C 1.36939 * 125.63804 * 182.11293 * 16 15 14 18 18 H 1.07995 * 120.00246 * 174.55126 * 17 16 15 19 19 C 1.38811 * 119.99669 * 354.54704 * 17 16 15 20 20 N 1.31623 * 120.00256 * 6.74778 * 19 17 16 21 21 Si 1.86805 * 119.99791 * 186.74989 * 19 17 16 22 22 H 1.48499 * 109.47018 * 94.98385 * 21 19 17 23 23 H 1.48497 * 109.47190 * 214.98589 * 21 19 17 24 24 H 1.48495 * 109.47210 * 334.98377 * 21 19 17 25 25 C 1.46467 * 108.29966 * 2.56945 * 16 15 14 26 26 H 1.08998 * 108.42086 * 88.75095 * 25 16 15 27 27 C 1.46761 * 121.21489 * 180.02562 * 9 7 6 28 28 H 1.08999 * 109.47146 * 59.99995 * 1 2 3 29 29 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47136 * 300.00599 * 1 2 3 31 31 H 1.08999 * 109.46996 * 239.99748 * 2 1 3 32 32 H 1.08996 * 109.46940 * 119.99539 * 2 1 3 33 33 H 1.09003 * 109.47346 * 59.99203 * 3 2 1 34 34 H 1.09005 * 109.46673 * 300.00173 * 3 2 1 35 35 H 1.08998 * 109.47183 * 183.95674 * 5 4 3 36 36 H 1.09001 * 109.46402 * 303.95994 * 5 4 3 37 37 H 1.08995 * 109.46939 * 63.95200 * 5 4 3 38 38 H 1.09006 * 109.46956 * 49.99662 * 6 4 3 39 39 H 1.09001 * 109.47402 * 290.00085 * 6 4 3 40 40 H 1.09007 * 109.77309 * 3.11971 * 10 9 7 41 41 H 1.08997 * 109.80680 * 242.37807 * 10 9 7 42 42 H 1.08999 * 109.26060 * 297.05790 * 11 10 9 43 43 H 1.09000 * 109.22774 * 177.60264 * 11 10 9 44 44 H 1.09003 * 110.78246 * 196.64946 * 14 12 11 45 45 H 1.08999 * 110.78256 * 319.90484 * 14 12 11 46 46 H 1.09004 * 109.90345 * 142.23394 * 15 14 12 47 47 H 1.08996 * 109.90468 * 263.29824 * 15 14 12 48 48 H 0.97005 * 119.99498 * 179.97438 * 20 19 17 49 49 H 1.08995 * 109.22715 * 112.19942 * 27 9 7 50 50 H 1.09001 * 109.22946 * 352.79542 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0349 0.8858 -1.2542 6 6 4.0355 2.7931 0.2374 7 6 5.5219 2.7182 0.4742 8 8 6.0870 1.6455 0.4468 9 7 6.2232 3.8435 0.7163 10 6 5.5642 5.1577 0.7543 11 6 5.8455 5.7867 2.1185 12 6 7.3533 5.8981 2.3589 13 1 7.8302 6.6558 1.7370 14 6 7.5373 6.1634 3.8855 15 6 7.3440 4.7581 4.4977 16 7 7.6185 3.7853 3.4351 17 6 7.5190 2.4246 3.5538 18 1 7.6576 1.7954 2.6871 19 6 7.2399 1.8543 4.7881 20 7 6.9401 2.6213 5.8149 21 14 7.2900 -0.0019 4.9920 22 1 8.6239 -0.4080 5.5027 23 1 6.2418 -0.4225 5.9562 24 1 7.0440 -0.6509 3.6793 25 6 8.0260 4.5184 2.2344 26 1 9.1066 4.6578 2.2661 27 6 7.6715 3.8016 0.9500 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 5.1223 0.8325 -1.2001 36 1 3.6291 -0.1144 -1.4060 37 1 3.7435 1.5263 -2.0866 38 1 3.5493 3.2235 1.1130 39 1 3.8372 3.4190 -0.6327 40 1 4.4894 5.0353 0.6195 41 1 5.9643 5.7944 -0.0347 42 1 5.4020 5.1676 2.8982 43 1 5.4015 6.7816 2.1534 44 1 8.5379 6.5420 4.0944 45 1 6.7792 6.8556 4.2518 46 1 8.0339 4.6178 5.3299 47 1 6.3170 4.6421 4.8437 48 1 6.7447 2.2225 6.6774 49 1 8.1835 4.2829 0.1168 50 1 7.9943 2.7627 1.0177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223978331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:44 Heat of formation + Delta-G solvation = -18.745742 kcal Electronic energy + Delta-G solvation = -27997.570432 eV Core-core repulsion = 24445.733770 eV Total energy + Delta-G solvation = -3551.836662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41526 -39.89120 -38.16603 -36.48321 -34.62748 -34.11614 -32.80940 -31.16502 -30.03612 -28.96485 -27.88763 -26.47223 -25.48552 -23.95324 -23.75048 -21.72145 -21.69907 -20.92701 -19.58114 -18.44608 -18.14030 -17.02694 -16.85640 -16.68389 -16.46183 -16.00555 -15.74060 -15.63485 -15.28939 -15.12758 -14.71740 -14.38566 -14.08612 -14.01316 -13.72401 -13.62983 -13.23319 -13.12198 -12.96760 -12.93771 -12.78296 -12.69365 -12.59386 -12.49346 -12.41104 -12.22672 -12.04054 -11.95058 -11.62599 -11.47179 -11.36816 -11.23602 -11.08682 -10.64063 -10.54211 -9.42593 -9.19044 -8.78126 -7.83739 -5.12550 1.35599 1.37327 1.49407 1.80161 2.15149 2.49081 3.00861 3.34928 3.52953 3.74817 3.90747 3.95067 3.97990 4.11060 4.14066 4.25574 4.29385 4.34275 4.46730 4.51063 4.53259 4.53642 4.56907 4.64038 4.67472 4.70621 4.76257 4.81569 4.87046 4.90413 4.93108 5.05085 5.10994 5.17255 5.19504 5.21726 5.29469 5.34708 5.41733 5.58299 5.68702 5.74208 5.76955 5.84347 6.00836 6.17025 6.26090 6.67799 7.18091 7.44629 7.86696 8.47770 9.26740 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.005451 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.021281 B = 5135.774092 C = 6493.850958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.060 3.940 4 N -0.558 5.558 5 C 0.027 3.973 6 C 0.052 3.948 7 C 0.508 3.492 8 O -0.572 6.572 9 N -0.600 5.600 10 C 0.109 3.891 11 C -0.119 4.119 12 C -0.084 4.084 13 H 0.122 0.878 14 C -0.131 4.131 15 C 0.187 3.813 16 N -0.604 5.604 17 C -0.201 4.201 18 H 0.066 0.934 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.952 3.048 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.287 1.287 25 C 0.141 3.859 26 H 0.024 0.976 27 C 0.120 3.880 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.032 0.968 43 H 0.102 0.898 44 H 0.065 0.935 45 H 0.081 0.919 46 H -0.003 1.003 47 H 0.004 0.996 48 H 0.242 0.758 49 H 0.092 0.908 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 9.175 -16.095 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.067 4.067 4 N -0.283 5.283 5 C -0.120 4.120 6 C -0.079 4.079 7 C 0.296 3.704 8 O -0.451 6.451 9 N -0.333 5.333 10 C -0.013 4.013 11 C -0.157 4.157 12 C -0.103 4.103 13 H 0.140 0.860 14 C -0.169 4.169 15 C 0.062 3.938 16 N -0.329 5.329 17 C -0.331 4.331 18 H 0.084 0.916 19 C -0.256 4.256 20 N -0.599 5.599 21 Si 0.783 3.217 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.213 1.213 25 C 0.035 3.965 26 H 0.041 0.959 27 C -0.004 4.004 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.051 0.949 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.015 0.985 47 H 0.022 0.978 48 H 0.051 0.949 49 H 0.110 0.890 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.679 8.147 -15.581 20.070 hybrid contribution 0.172 -1.177 0.538 1.305 sum -9.506 6.971 -15.043 19.112 Atomic orbital electron populations 1.21686 0.93800 1.02302 1.02353 1.21531 0.96728 0.95918 1.01804 1.22215 0.84988 0.98004 1.01505 1.61492 1.08782 1.21052 1.36931 1.22437 1.01030 0.99999 0.88561 1.21914 0.91044 0.91466 1.03435 1.20997 0.90175 0.83224 0.75968 1.90623 1.72258 1.29739 1.52496 1.47988 1.08291 1.07524 1.69519 1.21957 0.98647 0.82600 0.98048 1.21794 0.95484 1.01584 0.96872 1.22425 0.96221 0.95597 0.96057 0.85970 1.23044 1.01570 0.96144 0.96134 1.20816 0.96524 0.86802 0.89643 1.44308 1.78658 1.01271 1.08652 1.19099 1.38352 0.82332 0.93275 0.91627 1.25296 1.03593 1.00500 0.96171 1.70168 1.55457 1.33419 1.00826 0.85412 0.77003 0.82570 0.76692 1.21324 1.22022 1.21330 1.21040 0.96289 0.92365 0.86854 0.95858 1.21176 0.81225 1.01033 0.96948 0.91550 0.92090 0.92574 0.91780 0.93471 0.90813 0.92880 0.92500 0.90907 0.94337 0.87892 0.89035 0.88425 0.87885 0.94874 0.87979 0.91615 0.89992 0.98512 0.97757 0.94888 0.89044 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.63 5.87 30.59 0.18 -2.45 16 3 C 0.06 1.34 4.96 86.30 0.43 1.76 16 4 N -0.56 -16.62 4.50 -927.05 -4.17 -20.79 16 5 C 0.03 0.76 9.01 127.69 1.15 1.91 16 6 C 0.05 1.45 3.81 85.56 0.33 1.78 16 7 C 0.51 18.95 7.44 87.66 0.65 19.60 16 8 O -0.57 -27.23 13.77 -3.01 -0.04 -27.28 16 9 N -0.60 -19.68 2.96 -823.23 -2.44 -22.12 16 10 C 0.11 2.41 6.35 86.21 0.55 2.95 16 11 C -0.12 -3.11 5.04 30.57 0.15 -2.95 16 12 C -0.08 -2.40 3.68 -9.37 -0.03 -2.43 16 13 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 14 C -0.13 -4.43 6.32 32.16 0.20 -4.23 16 15 C 0.19 9.25 4.58 86.86 0.40 9.65 16 16 N -0.60 -30.94 3.13 -676.00 -2.12 -33.06 16 17 C -0.20 -11.95 9.71 84.03 0.82 -11.13 16 18 H 0.07 4.10 6.49 -2.91 -0.02 4.09 16 19 C -0.06 -3.89 5.48 84.86 0.46 -3.42 16 20 N -0.95 -59.97 10.36 21.65 0.22 -59.75 16 21 Si 0.95 51.65 29.56 68.60 2.03 53.68 16 22 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 23 H -0.29 -15.74 7.11 99.48 0.71 -15.04 16 24 H -0.29 -15.95 7.11 99.48 0.71 -15.24 16 25 C 0.14 5.48 3.00 44.78 0.13 5.61 16 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 27 C 0.12 4.36 5.67 85.78 0.49 4.85 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 1.33 6.47 -2.39 -0.02 1.32 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.63 7.93 -2.39 -0.02 1.61 16 34 H 0.05 0.95 8.12 -2.38 -0.02 0.93 16 35 H 0.06 1.96 5.88 -2.39 -0.01 1.94 16 36 H 0.07 1.85 6.30 -2.39 -0.02 1.84 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 2.80 7.58 -2.38 -0.02 2.78 16 39 H 0.09 1.84 7.88 -2.39 -0.02 1.82 16 40 H 0.10 1.72 6.01 -2.38 -0.01 1.71 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.03 1.20 6.84 -2.39 -0.02 1.19 16 43 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.08 2.41 7.98 -2.39 -0.02 2.39 16 46 H 0.00 -0.19 7.46 -2.39 -0.02 -0.21 16 47 H 0.00 0.24 7.13 -2.39 -0.02 0.22 16 48 H 0.24 15.01 8.31 -92.70 -0.77 14.24 16 49 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 50 H 0.05 2.22 5.56 -2.39 -0.01 2.21 16 Total: -1.00 -80.83 371.93 1.00 -79.83 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.90 Total: 9.59 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 6.62 Total: 19.90 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -8.51 Total: -135.73 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.04 Total: -27.28 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.03 Total: 53.68 kcal Total: -80.83 1.00 -79.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223978331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.084 kcal (2) G-P(sol) polarization free energy of solvation -80.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds