Wall clock time and date at job start Fri Apr 10 2020 18:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46905 * 111.00127 * 2 1 4 4 C 1.46901 * 111.00353 * 123.95089 * 2 1 3 5 5 C 1.52997 * 109.47496 * 169.99863 * 4 2 1 6 6 N 1.46893 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.46861 * 110.99932 * 300.36671 * 6 5 4 8 8 C 1.54066 * 108.84916 * 181.71060 * 7 6 5 9 9 H 1.08996 * 113.90787 * 168.83319 * 8 7 6 10 10 C 1.55558 * 106.10974 * 294.29492 * 8 7 6 11 11 C 1.55312 * 99.91824 * 71.82108 * 10 8 7 12 12 H 1.08998 * 112.69271 * 164.04913 * 11 10 8 13 13 C 1.46805 * 111.00218 * 66.04829 * 6 5 4 14 14 N 1.47884 * 104.02792 * 41.72341 * 11 10 8 15 15 C 1.34780 * 125.92717 * 152.79164 * 14 11 10 16 16 O 1.21281 * 119.99505 * 359.97438 * 15 14 11 17 17 C 1.50697 * 120.00528 * 179.97438 * 15 14 11 18 18 C 1.52995 * 109.47248 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46982 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99823 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00037 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00056 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46827 * 90.00283 * 23 21 19 25 25 H 1.48497 * 109.47103 * 210.00244 * 23 21 19 26 26 H 1.48495 * 109.47364 * 330.00226 * 23 21 19 27 27 C 1.47125 * 108.15387 * 332.75121 * 14 11 10 28 28 H 1.08996 * 109.47516 * 296.04723 * 1 2 3 29 29 H 1.09007 * 109.47497 * 56.04985 * 1 2 3 30 30 H 1.08997 * 109.47604 * 176.04608 * 1 2 3 31 31 H 1.08996 * 109.47246 * 183.95383 * 3 2 1 32 32 H 1.09010 * 109.46946 * 303.95435 * 3 2 1 33 33 H 1.08996 * 109.46957 * 63.94798 * 3 2 1 34 34 H 1.09007 * 109.46457 * 49.99945 * 4 2 1 35 35 H 1.08999 * 109.47225 * 290.00202 * 4 2 1 36 36 H 1.09006 * 109.46579 * 60.00109 * 5 4 2 37 37 H 1.09006 * 109.46926 * 300.00700 * 5 4 2 38 38 H 1.08997 * 109.57591 * 61.89987 * 7 6 5 39 39 H 1.08999 * 109.57524 * 301.51884 * 7 6 5 40 40 H 1.09002 * 111.31952 * 189.49632 * 10 8 7 41 41 H 1.08999 * 111.32060 * 314.15621 * 10 8 7 42 42 H 1.08992 * 109.51972 * 58.74532 * 13 6 5 43 43 H 1.08997 * 109.56587 * 298.59183 * 13 6 5 44 44 H 1.09001 * 109.46922 * 299.99982 * 17 15 14 45 45 H 1.09000 * 109.46987 * 59.99832 * 17 15 14 46 46 H 1.09001 * 109.47344 * 299.99968 * 18 17 15 47 47 H 1.09000 * 109.47064 * 60.00124 * 18 17 15 48 48 H 0.97000 * 120.00079 * 179.97438 * 22 21 19 49 49 H 1.09005 * 110.00227 * 241.80277 * 27 14 11 50 50 H 1.08995 * 110.00304 * 120.45766 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9704 6 7 4.0307 -1.7217 2.1076 7 6 3.7738 -1.0259 3.3752 8 6 4.3820 -1.8488 4.5269 9 1 4.4102 -1.3210 5.4801 10 6 3.5755 -3.1780 4.5805 11 6 4.1078 -3.8659 3.2937 12 1 3.8880 -4.9331 3.2658 13 6 3.5046 -3.0922 2.1071 14 7 5.5594 -3.5836 3.3106 15 6 6.5192 -4.3424 2.7453 16 8 6.2198 -5.3600 2.1573 17 6 7.9643 -3.9264 2.8438 18 6 8.8408 -4.9536 2.1245 19 6 10.2859 -4.5372 2.2225 20 1 10.5524 -3.6308 2.7458 21 6 11.2678 -5.3139 1.6450 22 7 10.9433 -6.4179 1.0082 23 14 13.0589 -4.7974 1.7658 24 1 13.6618 -5.3845 2.9894 25 1 13.7952 -5.2809 0.5703 26 1 13.1436 -3.3165 1.8339 27 6 5.7741 -2.3304 4.0508 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 1.5089 -1.7406 1.1756 35 1 1.7975 -0.2247 2.0628 36 1 3.9908 0.0195 0.9323 37 1 3.7023 -1.4965 0.0451 38 1 2.6989 -0.9261 3.5257 39 1 4.2341 -0.0382 3.3494 40 1 3.8234 -3.7563 5.4705 41 1 2.5031 -2.9937 4.5165 42 1 3.7763 -3.5863 1.1744 43 1 2.4191 -3.0666 2.2030 44 1 8.0935 -2.9490 2.3790 45 1 8.2558 -3.8714 3.8926 46 1 8.7116 -5.9308 2.5897 47 1 8.5494 -5.0090 1.0757 48 1 11.6341 -6.9641 0.6015 49 1 6.2233 -1.5832 3.3965 50 1 6.4201 -2.5108 4.9100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271254694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:47 Heat of formation + Delta-G solvation = -13.696298 kcal Electronic energy + Delta-G solvation = -26783.512518 eV Core-core repulsion = 23231.894816 eV Total energy + Delta-G solvation = -3551.617702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94763 -38.53424 -37.62502 -35.23434 -33.37856 -32.02884 -31.40201 -30.30837 -28.92096 -27.94639 -26.02603 -25.50912 -25.22409 -22.80410 -22.62516 -21.33215 -20.89074 -19.32140 -18.44639 -17.12402 -16.55392 -15.89468 -15.84469 -15.43641 -15.32718 -14.95340 -14.72582 -14.41194 -14.21365 -14.14377 -13.79957 -13.40294 -13.04462 -12.86715 -12.74121 -12.65289 -12.48421 -12.26439 -12.18458 -12.02814 -11.99672 -11.79444 -11.67630 -11.24273 -11.01419 -10.87578 -10.83902 -10.57301 -10.52520 -10.50716 -9.84135 -9.54984 -9.06777 -8.87960 -8.81327 -8.37129 -8.25760 -8.10532 -5.89209 -3.93017 3.31220 3.37716 3.41292 3.43565 3.46535 3.54543 3.89028 4.30233 4.45494 4.52901 4.56141 4.61922 4.75139 4.78724 4.94303 4.98256 5.08299 5.12948 5.16101 5.18954 5.25558 5.27594 5.39619 5.44816 5.45566 5.47759 5.53546 5.57607 5.65286 5.68992 5.69965 5.87241 5.89704 5.90617 6.01750 6.05291 6.36466 6.41037 6.56269 6.60971 6.68599 6.95201 6.96665 7.05853 7.82522 7.96664 8.08302 8.16158 8.47362 8.92780 9.16028 9.69926 11.21863 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.002922 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.429440 B = 9578.755441 C =10168.888159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.021 3.979 4 C 0.018 3.982 5 C 0.062 3.938 6 N -0.527 5.527 7 C 0.058 3.942 8 C -0.106 4.106 9 H 0.105 0.895 10 C -0.134 4.134 11 C 0.133 3.867 12 H 0.102 0.898 13 C 0.047 3.953 14 N -0.610 5.610 15 C 0.531 3.469 16 O -0.540 6.540 17 C -0.122 4.122 18 C 0.038 3.962 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.125 3.875 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.022 0.978 47 H 0.023 0.977 48 H 0.260 0.740 49 H 0.076 0.924 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.646 16.199 5.586 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.112 4.112 5 C -0.066 4.066 6 N -0.250 5.250 7 C -0.070 4.070 8 C -0.125 4.125 9 H 0.123 0.877 10 C -0.172 4.172 11 C 0.029 3.971 12 H 0.120 0.880 13 C -0.081 4.081 14 N -0.346 5.346 15 C 0.322 3.678 16 O -0.416 6.416 17 C -0.162 4.162 18 C 0.000 4.000 19 C -0.562 4.562 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C 0.001 3.999 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.040 0.960 47 H 0.041 0.959 48 H 0.070 0.930 49 H 0.094 0.906 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.964 15.169 4.622 27.090 hybrid contribution -0.277 0.811 0.864 1.217 sum -22.241 15.980 5.486 27.930 Atomic orbital electron populations 1.22384 0.87364 1.02277 1.00356 1.61947 1.07804 1.14046 1.42958 1.22459 1.01359 0.88570 1.00333 1.22906 0.98413 0.98354 0.91535 1.22184 0.90850 0.99012 0.94570 1.61741 1.59063 1.01870 1.02359 1.22360 0.98094 0.97377 0.89146 1.22824 0.95452 0.96207 0.97995 0.87706 1.23142 0.99360 0.96489 0.98230 1.22240 0.82129 0.99282 0.93493 0.87974 1.22640 0.96087 0.88977 1.00430 1.48619 1.05368 1.24495 1.56113 1.21200 0.87776 0.82266 0.76580 1.90656 1.83351 1.25394 1.42210 1.21801 0.89088 1.02738 1.02555 1.18893 0.92131 0.93039 0.95921 1.21233 0.91737 1.08380 1.34878 0.92671 1.25023 0.98987 0.95037 0.95377 1.70003 1.33054 1.14046 1.35830 0.86605 0.85199 0.78757 0.77468 1.20731 1.21262 1.19896 1.21855 0.95762 0.86871 0.95415 0.95878 0.91277 0.91398 0.90785 0.91370 0.95796 0.90789 0.94684 0.90543 0.89650 0.94618 0.90461 0.90464 0.90496 0.90014 0.94398 0.90357 0.90687 0.95974 0.95871 0.93025 0.90588 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.06 0.57 0.75 16 2 N -0.54 -4.68 5.02 -251.26 -1.26 -5.94 16 3 C 0.02 0.15 9.32 60.07 0.56 0.71 16 4 C 0.02 0.15 4.31 -3.82 -0.02 0.13 16 5 C 0.06 0.61 5.27 -3.83 -0.02 0.59 16 6 N -0.53 -5.74 3.76 -233.43 -0.88 -6.62 16 7 C 0.06 0.50 4.48 -3.29 -0.01 0.48 16 8 C -0.11 -0.92 4.40 -87.75 -0.39 -1.31 16 9 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 10 C -0.13 -1.24 6.21 -24.14 -0.15 -1.39 16 11 C 0.13 1.71 4.05 -65.44 -0.27 1.45 16 12 H 0.10 1.44 8.02 -51.93 -0.42 1.02 16 13 C 0.05 0.56 4.89 -3.37 -0.02 0.54 16 14 N -0.61 -9.51 2.74 -161.52 -0.44 -9.95 16 15 C 0.53 11.01 7.86 -10.99 -0.09 10.92 16 16 O -0.54 -13.41 16.24 5.56 0.09 -13.32 16 17 C -0.12 -2.65 4.85 -27.89 -0.14 -2.79 16 18 C 0.04 1.05 4.26 -27.88 -0.12 0.94 16 19 C -0.52 -15.28 9.11 -34.44 -0.31 -15.60 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -28.05 13.29 55.43 0.74 -27.32 16 23 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.12 1.50 5.45 -2.75 -0.01 1.48 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 31 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 32 H 0.07 0.44 8.12 -51.92 -0.42 0.02 16 33 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.07 0.67 6.51 -51.93 -0.34 0.33 16 35 H 0.04 0.29 6.42 -51.93 -0.33 -0.04 16 36 H 0.08 0.72 6.55 -51.93 -0.34 0.38 16 37 H 0.09 0.99 8.12 -51.93 -0.42 0.57 16 38 H 0.04 0.28 6.25 -51.93 -0.32 -0.04 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.59 7.80 -51.93 -0.41 0.19 16 42 H 0.08 1.17 8.13 -51.93 -0.42 0.74 16 43 H 0.04 0.38 6.42 -51.93 -0.33 0.04 16 44 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 49 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -34.69 381.51 -10.62 -45.31 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -9.10 Total: -3.51 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.50 Total: -1.48 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -1.84 Total: -49.83 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.69 -10.62 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271254694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.618 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds