Wall clock time and date at job start Fri Apr 10 2020 18:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46905 * 111.00127 * 2 1 4 4 C 1.46901 * 111.00353 * 123.95089 * 2 1 3 5 5 C 1.52997 * 109.47496 * 169.99863 * 4 2 1 6 6 N 1.46893 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.46861 * 110.99932 * 300.36671 * 6 5 4 8 8 C 1.54066 * 108.84916 * 181.71060 * 7 6 5 9 9 H 1.08996 * 113.90787 * 168.83319 * 8 7 6 10 10 C 1.55558 * 106.10974 * 294.29492 * 8 7 6 11 11 C 1.55312 * 99.91824 * 71.82108 * 10 8 7 12 12 H 1.08998 * 112.69271 * 164.04913 * 11 10 8 13 13 C 1.46805 * 111.00218 * 66.04829 * 6 5 4 14 14 N 1.47884 * 104.02792 * 41.72341 * 11 10 8 15 15 C 1.34780 * 125.92717 * 152.79164 * 14 11 10 16 16 O 1.21281 * 119.99505 * 359.97438 * 15 14 11 17 17 C 1.50697 * 120.00528 * 179.97438 * 15 14 11 18 18 C 1.52995 * 109.47248 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46982 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99823 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00037 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00056 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46827 * 90.00283 * 23 21 19 25 25 H 1.48497 * 109.47103 * 210.00244 * 23 21 19 26 26 H 1.48495 * 109.47364 * 330.00226 * 23 21 19 27 27 C 1.47125 * 108.15387 * 332.75121 * 14 11 10 28 28 H 1.08996 * 109.47516 * 296.04723 * 1 2 3 29 29 H 1.09007 * 109.47497 * 56.04985 * 1 2 3 30 30 H 1.08997 * 109.47604 * 176.04608 * 1 2 3 31 31 H 1.08996 * 109.47246 * 183.95383 * 3 2 1 32 32 H 1.09010 * 109.46946 * 303.95435 * 3 2 1 33 33 H 1.08996 * 109.46957 * 63.94798 * 3 2 1 34 34 H 1.09007 * 109.46457 * 49.99945 * 4 2 1 35 35 H 1.08999 * 109.47225 * 290.00202 * 4 2 1 36 36 H 1.09006 * 109.46579 * 60.00109 * 5 4 2 37 37 H 1.09006 * 109.46926 * 300.00700 * 5 4 2 38 38 H 1.08997 * 109.57591 * 61.89987 * 7 6 5 39 39 H 1.08999 * 109.57524 * 301.51884 * 7 6 5 40 40 H 1.09002 * 111.31952 * 189.49632 * 10 8 7 41 41 H 1.08999 * 111.32060 * 314.15621 * 10 8 7 42 42 H 1.08992 * 109.51972 * 58.74532 * 13 6 5 43 43 H 1.08997 * 109.56587 * 298.59183 * 13 6 5 44 44 H 1.09001 * 109.46922 * 299.99982 * 17 15 14 45 45 H 1.09000 * 109.46987 * 59.99832 * 17 15 14 46 46 H 1.09001 * 109.47344 * 299.99968 * 18 17 15 47 47 H 1.09000 * 109.47064 * 60.00124 * 18 17 15 48 48 H 0.97000 * 120.00079 * 179.97438 * 22 21 19 49 49 H 1.09005 * 110.00227 * 241.80277 * 27 14 11 50 50 H 1.08995 * 110.00304 * 120.45766 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9704 6 7 4.0307 -1.7217 2.1076 7 6 3.7738 -1.0259 3.3752 8 6 4.3820 -1.8488 4.5269 9 1 4.4102 -1.3210 5.4801 10 6 3.5755 -3.1780 4.5805 11 6 4.1078 -3.8659 3.2937 12 1 3.8880 -4.9331 3.2658 13 6 3.5046 -3.0922 2.1071 14 7 5.5594 -3.5836 3.3106 15 6 6.5192 -4.3424 2.7453 16 8 6.2198 -5.3600 2.1573 17 6 7.9643 -3.9264 2.8438 18 6 8.8408 -4.9536 2.1245 19 6 10.2859 -4.5372 2.2225 20 1 10.5524 -3.6308 2.7458 21 6 11.2678 -5.3139 1.6450 22 7 10.9433 -6.4179 1.0082 23 14 13.0589 -4.7974 1.7658 24 1 13.6618 -5.3845 2.9894 25 1 13.7952 -5.2809 0.5703 26 1 13.1436 -3.3165 1.8339 27 6 5.7741 -2.3304 4.0508 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 1.5089 -1.7406 1.1756 35 1 1.7975 -0.2247 2.0628 36 1 3.9908 0.0195 0.9323 37 1 3.7023 -1.4965 0.0451 38 1 2.6989 -0.9261 3.5257 39 1 4.2341 -0.0382 3.3494 40 1 3.8234 -3.7563 5.4705 41 1 2.5031 -2.9937 4.5165 42 1 3.7763 -3.5863 1.1744 43 1 2.4191 -3.0666 2.2030 44 1 8.0935 -2.9490 2.3790 45 1 8.2558 -3.8714 3.8926 46 1 8.7116 -5.9308 2.5897 47 1 8.5494 -5.0090 1.0757 48 1 11.6341 -6.9641 0.6015 49 1 6.2233 -1.5832 3.3965 50 1 6.4201 -2.5108 4.9100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271254694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:46 Heat of formation + Delta-G solvation = -38.528071 kcal Electronic energy + Delta-G solvation = -26784.589304 eV Core-core repulsion = 23231.894816 eV Total energy + Delta-G solvation = -3552.694488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95734 -39.84031 -38.56320 -36.17551 -35.56902 -33.34914 -32.82365 -31.74729 -29.66499 -28.49687 -27.75251 -26.81189 -25.95487 -24.29102 -23.48907 -22.49829 -22.02520 -20.32054 -19.79167 -18.80645 -17.87294 -17.27754 -16.59481 -16.50892 -16.47670 -16.35184 -16.00632 -15.56226 -15.49985 -15.16511 -14.68916 -14.36616 -14.28846 -14.05655 -13.79641 -13.65962 -13.57132 -13.50734 -13.30216 -13.09534 -12.97150 -12.81289 -12.74252 -12.60382 -12.46744 -12.44763 -12.04693 -11.92763 -11.66343 -11.56411 -11.40296 -11.30358 -11.27259 -10.63294 -10.56631 -9.55285 -9.38278 -9.05582 -8.17442 -6.32001 1.41629 1.45314 1.56308 1.77321 2.10795 2.43980 2.77899 3.15022 3.15945 3.47072 3.61381 3.75461 3.89203 3.97223 4.06790 4.11531 4.24484 4.29595 4.32661 4.40901 4.47399 4.48922 4.50626 4.55342 4.59319 4.67593 4.69059 4.74323 4.77185 4.87299 4.91870 4.95934 4.96687 4.99237 5.04134 5.09012 5.12011 5.19405 5.21405 5.46919 5.55677 5.62812 5.84978 5.91969 6.04147 6.16042 6.18018 6.21421 6.66448 6.86502 7.34444 7.38658 8.95552 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.002922 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.429440 B = 9578.755441 C =10168.888159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.564 5.564 3 C 0.022 3.978 4 C 0.030 3.970 5 C 0.069 3.931 6 N -0.546 5.546 7 C 0.058 3.942 8 C -0.089 4.089 9 H 0.143 0.857 10 C -0.120 4.120 11 C 0.117 3.883 12 H 0.080 0.920 13 C 0.058 3.942 14 N -0.600 5.600 15 C 0.525 3.475 16 O -0.599 6.599 17 C -0.107 4.107 18 C 0.046 3.954 19 C -0.542 4.542 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.939 5.939 23 Si 0.976 3.024 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.255 1.255 27 C 0.112 3.888 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.097 0.903 46 H -0.020 1.020 47 H -0.022 1.022 48 H 0.263 0.737 49 H 0.073 0.927 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.242 19.681 8.028 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.126 4.126 4 C -0.100 4.100 5 C -0.059 4.059 6 N -0.270 5.270 7 C -0.069 4.069 8 C -0.108 4.108 9 H 0.161 0.839 10 C -0.158 4.158 11 C 0.014 3.986 12 H 0.098 0.902 13 C -0.071 4.071 14 N -0.333 5.333 15 C 0.315 3.685 16 O -0.480 6.480 17 C -0.147 4.147 18 C 0.009 3.991 19 C -0.580 4.580 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.800 3.200 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.179 1.179 27 C -0.011 4.011 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.115 0.885 46 H -0.001 1.001 47 H -0.004 1.004 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.606 18.725 7.111 30.203 hybrid contribution -0.169 -0.262 0.071 0.319 sum -22.775 18.463 7.181 30.185 Atomic orbital electron populations 1.22395 0.86398 1.02403 1.01061 1.61929 1.08843 1.14905 1.43208 1.22460 1.01095 0.87975 1.01038 1.22725 0.96976 0.98210 0.92092 1.22056 0.92162 0.98529 0.93179 1.61696 1.59832 1.01528 1.03981 1.22465 0.99398 0.97491 0.87536 1.22920 0.92426 0.95900 0.99517 0.83901 1.23122 1.00807 0.96180 0.95686 1.22516 0.80482 0.98981 0.96656 0.90186 1.22416 0.97266 0.89440 0.97991 1.48525 1.05920 1.24705 1.54142 1.20925 0.88406 0.82215 0.76912 1.90626 1.84122 1.28065 1.45189 1.21514 0.89149 1.01088 1.02960 1.18655 0.93810 0.93086 0.93595 1.21691 0.92190 1.09096 1.35026 0.90701 1.26178 1.05000 0.94781 0.94583 1.70191 1.35094 1.15657 1.36934 0.85285 0.77774 0.79282 0.77682 1.19513 1.21085 1.17863 1.22210 0.98688 0.84901 0.95259 0.95108 0.90596 0.91617 0.91201 0.90773 0.94965 0.91514 0.93454 0.89843 0.92457 0.92744 0.89120 0.89957 0.87847 0.93923 0.92054 0.88820 0.88457 1.00115 1.00352 0.92832 0.90884 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.57 127.69 1.22 1.54 16 2 N -0.56 -8.89 5.02 -948.85 -4.76 -13.65 16 3 C 0.02 0.28 9.32 127.69 1.19 1.47 16 4 C 0.03 0.45 4.31 86.30 0.37 0.82 16 5 C 0.07 1.31 5.27 86.30 0.45 1.76 16 6 N -0.55 -11.17 3.76 -892.44 -3.35 -14.52 16 7 C 0.06 0.77 4.48 86.67 0.39 1.15 16 8 C -0.09 -1.16 4.40 -8.94 -0.04 -1.20 16 9 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 10 C -0.12 -1.81 6.21 32.27 0.20 -1.61 16 11 C 0.12 2.99 4.05 45.85 0.19 3.18 16 12 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 13 C 0.06 1.36 4.89 86.65 0.42 1.79 16 14 N -0.60 -18.73 2.74 -783.30 -2.14 -20.87 16 15 C 0.52 22.83 7.86 87.66 0.69 23.52 16 16 O -0.60 -32.22 16.24 -3.03 -0.05 -32.26 16 17 C -0.11 -4.79 4.85 29.85 0.14 -4.64 16 18 C 0.05 2.74 4.26 29.85 0.13 2.86 16 19 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 20 H 0.07 4.06 7.74 -2.91 -0.02 4.03 16 21 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 22 N -0.94 -61.44 13.29 21.45 0.28 -61.16 16 23 Si 0.98 45.50 29.54 68.60 2.03 47.53 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 27 C 0.11 2.41 5.45 86.88 0.47 2.88 16 28 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.81 8.12 -2.38 -0.02 0.79 16 30 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.07 0.92 6.47 -2.39 -0.02 0.90 16 32 H 0.07 0.83 8.12 -2.38 -0.02 0.81 16 33 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 1.11 6.51 -2.38 -0.02 1.09 16 35 H 0.05 0.62 6.42 -2.39 -0.02 0.60 16 36 H 0.08 1.46 6.55 -2.38 -0.02 1.44 16 37 H 0.06 1.39 8.12 -2.38 -0.02 1.37 16 38 H 0.05 0.57 6.25 -2.39 -0.01 0.55 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.11 7.80 -2.39 -0.02 1.09 16 42 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 43 H 0.06 1.14 6.42 -2.39 -0.02 1.13 16 44 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 45 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 46 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 47 H -0.02 -1.48 8.10 -2.39 -0.02 -1.49 16 48 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 49 H 0.07 1.67 7.69 -2.38 -0.02 1.65 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -81.63 381.51 -0.58 -82.21 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.89 Total: 11.22 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.53 Total: 1.51 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -9.97 Total: -110.20 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -81.63 -0.58 -82.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271254694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.685 kcal (2) G-P(sol) polarization free energy of solvation -81.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds