Wall clock time and date at job start Fri Apr 10 2020 18:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00360 * 2 1 4 4 C 1.46906 * 110.99755 * 123.95384 * 2 1 3 5 5 C 1.53002 * 109.47053 * 66.04236 * 4 2 1 6 6 N 1.46896 * 109.47058 * 180.02562 * 5 4 2 7 7 C 1.47558 * 110.99880 * 69.87604 * 6 5 4 8 8 C 1.54597 * 107.32889 * 123.21758 * 7 6 5 9 9 C 1.53653 * 102.81223 * 20.84376 * 8 7 6 10 10 C 1.52380 * 116.38381 * 196.91624 * 9 8 7 11 11 N 1.47889 * 85.59301 * 218.66434 * 10 9 8 12 12 C 1.34778 * 134.34813 * 203.51585 * 11 10 9 13 13 O 1.21275 * 120.00295 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.99510 * 359.96551 * 12 11 10 15 15 C 1.53001 * 109.47025 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47206 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00145 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47392 * 59.99295 * 20 18 16 22 22 H 1.48495 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46911 * 299.99458 * 20 18 16 24 24 C 1.47890 * 91.31550 * 23.49461 * 11 10 9 25 25 C 1.48145 * 111.00216 * 190.87225 * 6 5 4 26 26 H 1.08995 * 109.47046 * 296.04847 * 1 2 3 27 27 H 1.09008 * 109.46903 * 56.04730 * 1 2 3 28 28 H 1.08999 * 109.47457 * 176.04446 * 1 2 3 29 29 H 1.08998 * 109.47331 * 183.95016 * 3 2 1 30 30 H 1.09003 * 109.47294 * 303.95365 * 3 2 1 31 31 H 1.09006 * 109.47438 * 63.95296 * 3 2 1 32 32 H 1.08992 * 109.47459 * 186.04319 * 4 2 1 33 33 H 1.09004 * 109.47040 * 306.04470 * 4 2 1 34 34 H 1.09001 * 109.47142 * 300.00160 * 5 4 2 35 35 H 1.09004 * 109.47006 * 60.00213 * 5 4 2 36 36 H 1.08997 * 109.87180 * 242.65053 * 7 6 5 37 37 H 1.08996 * 109.87584 * 3.78529 * 7 6 5 38 38 H 1.08999 * 110.74336 * 139.17289 * 8 7 6 39 39 H 1.08995 * 110.74512 * 262.51445 * 8 7 6 40 40 H 1.09002 * 113.85229 * 332.82691 * 10 9 8 41 41 H 1.09002 * 113.85324 * 104.50396 * 10 9 8 42 42 H 1.08995 * 109.47966 * 300.00579 * 14 12 11 43 43 H 1.09001 * 109.47211 * 60.00658 * 14 12 11 44 44 H 1.09000 * 109.47068 * 300.00209 * 15 14 12 45 45 H 1.08998 * 109.47182 * 60.00421 * 15 14 12 46 46 H 0.96999 * 119.99907 * 180.02562 * 19 18 16 47 47 H 1.09000 * 113.85863 * 222.34458 * 24 11 10 48 48 H 1.09001 * 113.97168 * 90.67834 * 24 11 10 49 49 H 1.08995 * 110.40282 * 333.99805 * 25 6 5 50 50 H 1.09004 * 110.40622 * 96.42638 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 7 2.1571 -3.0085 2.1083 7 6 1.4222 -2.6872 3.3468 8 6 0.8556 -4.0135 3.9034 9 6 1.7471 -5.0718 3.2353 10 6 1.2238 -6.5029 3.2466 11 7 2.6297 -6.8941 3.4863 12 6 3.3437 -8.0179 3.2773 13 8 4.5174 -8.0559 3.5801 14 6 2.6834 -9.2274 2.6674 15 6 3.7069 -10.3575 2.5402 16 6 3.0468 -11.5669 1.9297 17 1 2.0016 -11.5330 1.6598 18 6 3.7769 -12.7169 1.7166 19 7 5.0495 -12.7583 2.0457 20 14 2.9584 -14.2162 0.9606 21 1 2.4353 -13.8689 -0.3852 22 1 3.9519 -15.3130 0.8370 23 1 1.8375 -14.6586 1.8284 24 6 2.9408 -5.5611 4.0464 25 6 2.0551 -4.4655 1.8602 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3431 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 3.0796 -0.6612 1.1757 33 1 1.5610 -0.3872 2.0629 34 1 0.5470 -2.3474 0.9324 35 1 2.0657 -2.6214 0.0452 36 1 2.0996 -2.2396 4.0741 37 1 0.6060 -1.9995 3.1256 38 1 0.9573 -4.0519 4.9879 39 1 -0.1853 -4.1431 3.6073 40 1 0.5571 -6.7219 4.0807 41 1 0.8313 -6.8363 2.2859 42 1 1.8610 -9.5526 3.3045 43 1 2.2988 -8.9723 1.6799 44 1 4.5295 -10.0326 1.9031 45 1 4.0911 -10.6126 3.5278 46 1 5.5632 -13.5673 1.8955 47 1 3.8961 -5.1551 3.7135 48 1 2.7998 -5.4900 5.1249 49 1 1.2452 -4.6762 1.1619 50 1 2.9992 -4.8528 1.4769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271255692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:54 Heat of formation + Delta-G solvation = 8.313816 kcal Electronic energy + Delta-G solvation = -25622.262950 eV Core-core repulsion = 22071.599679 eV Total energy + Delta-G solvation = -3550.663271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98808 -38.79796 -37.84359 -36.43247 -33.42160 -32.22178 -30.97533 -29.35199 -28.91473 -28.01078 -26.72847 -25.94323 -24.84737 -24.01095 -22.01743 -21.31657 -20.59409 -19.20321 -18.44391 -16.90986 -16.60151 -16.38347 -15.82604 -15.63164 -15.55905 -15.21249 -14.91009 -14.63452 -14.36788 -14.14225 -13.84791 -13.71547 -13.38238 -12.83358 -12.79729 -12.62774 -12.42846 -12.19718 -12.13520 -12.09924 -11.91602 -11.83097 -11.52419 -11.33980 -11.13462 -11.11851 -11.02139 -10.89462 -10.65792 -10.58020 -9.92633 -9.62975 -9.14363 -8.94976 -8.81147 -8.61378 -8.41444 -8.28882 -5.93732 -3.98297 3.05640 3.26464 3.28446 3.35679 3.40266 3.42103 3.85243 4.16565 4.27512 4.38335 4.48525 4.63976 4.71938 4.75514 4.76408 4.90556 4.94072 5.11340 5.13757 5.16878 5.17296 5.29926 5.34482 5.37967 5.40809 5.42759 5.45919 5.47523 5.48537 5.52663 5.62734 5.64889 5.71627 5.74067 5.85514 5.99252 6.14401 6.26698 6.35700 6.54593 6.55359 6.66492 6.80654 6.93387 7.76264 7.88918 8.03945 8.10180 8.40844 8.79253 9.09923 9.64886 11.17184 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002222 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.924777 B =12599.685751 C =13064.382643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.026 3.974 4 C 0.060 3.940 5 C 0.055 3.945 6 N -0.529 5.529 7 C 0.043 3.957 8 C -0.128 4.128 9 C -0.105 4.105 10 C 0.120 3.880 11 N -0.654 5.654 12 C 0.533 3.467 13 O -0.532 6.532 14 C -0.122 4.122 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.125 3.875 25 C 0.072 3.928 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.024 0.976 45 H 0.023 0.977 46 H 0.261 0.739 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.055 0.945 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.156 28.568 0.348 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.122 4.122 4 C -0.068 4.068 5 C -0.074 4.074 6 N -0.253 5.253 7 C -0.085 4.085 8 C -0.167 4.167 9 C -0.107 4.107 10 C -0.004 4.004 11 N -0.393 5.393 12 C 0.324 3.676 13 O -0.407 6.407 14 C -0.162 4.162 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.003 3.997 25 C -0.055 4.055 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.521 28.132 0.084 30.400 hybrid contribution -1.652 -0.634 0.291 1.794 sum -13.173 27.498 0.375 30.493 Atomic orbital electron populations 1.22455 0.87524 1.02398 1.00408 1.61892 1.07935 1.14012 1.43430 1.22368 1.00988 0.88463 1.00403 1.22093 1.01058 0.92904 0.90769 1.22244 0.97394 0.93253 0.94497 1.63561 1.53883 1.05192 1.02658 1.22908 0.96410 0.96655 0.92504 1.22563 0.99007 0.94051 1.01062 1.22472 0.97055 0.94342 0.96807 1.22875 0.85250 0.90262 1.02008 1.50402 1.11434 1.12997 1.64421 1.21336 0.86583 0.82364 0.77278 1.90678 1.16469 1.82099 1.51480 1.21812 1.01388 0.93063 0.99952 1.18908 0.92983 0.90017 0.98149 1.21174 0.96412 0.97424 1.41549 0.92690 1.25030 0.94849 0.98775 0.95753 1.69989 1.07136 1.28195 1.47468 0.86644 0.79066 0.82436 0.79722 1.20251 1.21276 1.20274 1.22781 0.98243 0.81190 0.97519 1.22574 1.02024 0.86301 0.94639 0.95753 0.91370 0.91164 0.91134 0.91324 0.95723 0.89813 0.94853 0.94613 0.89843 0.90378 0.92884 0.90105 0.90778 0.89662 0.89813 0.90488 0.90452 0.95796 0.95863 0.92889 0.89845 0.90281 0.92659 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.55 -4.13 5.02 -251.26 -1.26 -5.39 16 3 C 0.03 0.16 9.57 60.06 0.57 0.73 16 4 C 0.06 0.46 4.99 -3.82 -0.02 0.44 16 5 C 0.05 0.44 4.46 -3.83 -0.02 0.43 16 6 N -0.53 -4.73 5.16 -231.69 -1.20 -5.92 16 7 C 0.04 0.31 6.23 -2.62 -0.02 0.30 16 8 C -0.13 -0.89 6.35 -25.55 -0.16 -1.05 16 9 C -0.11 -0.99 0.99 -154.83 -0.15 -1.14 16 10 C 0.12 1.26 7.99 -3.60 -0.03 1.24 16 11 N -0.65 -10.00 3.62 -186.84 -0.68 -10.67 16 12 C 0.53 11.00 8.06 -10.99 -0.09 10.91 16 13 O -0.53 -13.41 16.71 5.56 0.09 -13.32 16 14 C -0.12 -2.61 5.38 -27.88 -0.15 -2.76 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 16 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.13 1.54 8.14 -3.59 -0.03 1.51 16 25 C 0.07 0.70 6.09 -2.93 -0.02 0.69 16 26 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 0.37 8.12 -51.92 -0.42 -0.05 16 28 H 0.07 0.43 6.47 -51.93 -0.34 0.09 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.03 0.25 7.12 -51.93 -0.37 -0.12 16 34 H 0.04 0.28 6.37 -51.93 -0.33 -0.06 16 35 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.35 6.91 -51.93 -0.36 -0.01 16 38 H 0.08 0.50 7.99 -51.93 -0.41 0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 48 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 49 H 0.06 0.50 7.80 -51.93 -0.40 0.10 16 50 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -34.88 395.80 -10.78 -45.66 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -9.34 Total: -5.06 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -2.40 Total: -49.07 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.88 -10.78 -45.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271255692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.970 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds