Wall clock time and date at job start Fri Apr 10 2020 18:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00360 * 2 1 4 4 C 1.46906 * 110.99755 * 123.95384 * 2 1 3 5 5 C 1.53002 * 109.47053 * 66.04236 * 4 2 1 6 6 N 1.46896 * 109.47058 * 180.02562 * 5 4 2 7 7 C 1.47558 * 110.99880 * 69.87604 * 6 5 4 8 8 C 1.54597 * 107.32889 * 123.21758 * 7 6 5 9 9 C 1.53653 * 102.81223 * 20.84376 * 8 7 6 10 10 C 1.52380 * 116.38381 * 196.91624 * 9 8 7 11 11 N 1.47889 * 85.59301 * 218.66434 * 10 9 8 12 12 C 1.34778 * 134.34813 * 203.51585 * 11 10 9 13 13 O 1.21275 * 120.00295 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.99510 * 359.96551 * 12 11 10 15 15 C 1.53001 * 109.47025 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47206 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00145 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47392 * 59.99295 * 20 18 16 22 22 H 1.48495 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46911 * 299.99458 * 20 18 16 24 24 C 1.47890 * 91.31550 * 23.49461 * 11 10 9 25 25 C 1.48145 * 111.00216 * 190.87225 * 6 5 4 26 26 H 1.08995 * 109.47046 * 296.04847 * 1 2 3 27 27 H 1.09008 * 109.46903 * 56.04730 * 1 2 3 28 28 H 1.08999 * 109.47457 * 176.04446 * 1 2 3 29 29 H 1.08998 * 109.47331 * 183.95016 * 3 2 1 30 30 H 1.09003 * 109.47294 * 303.95365 * 3 2 1 31 31 H 1.09006 * 109.47438 * 63.95296 * 3 2 1 32 32 H 1.08992 * 109.47459 * 186.04319 * 4 2 1 33 33 H 1.09004 * 109.47040 * 306.04470 * 4 2 1 34 34 H 1.09001 * 109.47142 * 300.00160 * 5 4 2 35 35 H 1.09004 * 109.47006 * 60.00213 * 5 4 2 36 36 H 1.08997 * 109.87180 * 242.65053 * 7 6 5 37 37 H 1.08996 * 109.87584 * 3.78529 * 7 6 5 38 38 H 1.08999 * 110.74336 * 139.17289 * 8 7 6 39 39 H 1.08995 * 110.74512 * 262.51445 * 8 7 6 40 40 H 1.09002 * 113.85229 * 332.82691 * 10 9 8 41 41 H 1.09002 * 113.85324 * 104.50396 * 10 9 8 42 42 H 1.08995 * 109.47966 * 300.00579 * 14 12 11 43 43 H 1.09001 * 109.47211 * 60.00658 * 14 12 11 44 44 H 1.09000 * 109.47068 * 300.00209 * 15 14 12 45 45 H 1.08998 * 109.47182 * 60.00421 * 15 14 12 46 46 H 0.96999 * 119.99907 * 180.02562 * 19 18 16 47 47 H 1.09000 * 113.85863 * 222.34458 * 24 11 10 48 48 H 1.09001 * 113.97168 * 90.67834 * 24 11 10 49 49 H 1.08995 * 110.40282 * 333.99805 * 25 6 5 50 50 H 1.09004 * 110.40622 * 96.42638 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 7 2.1571 -3.0085 2.1083 7 6 1.4222 -2.6872 3.3468 8 6 0.8556 -4.0135 3.9034 9 6 1.7471 -5.0718 3.2353 10 6 1.2238 -6.5029 3.2466 11 7 2.6297 -6.8941 3.4863 12 6 3.3437 -8.0179 3.2773 13 8 4.5174 -8.0559 3.5801 14 6 2.6834 -9.2274 2.6674 15 6 3.7069 -10.3575 2.5402 16 6 3.0468 -11.5669 1.9297 17 1 2.0016 -11.5330 1.6598 18 6 3.7769 -12.7169 1.7166 19 7 5.0495 -12.7583 2.0457 20 14 2.9584 -14.2162 0.9606 21 1 2.4353 -13.8689 -0.3852 22 1 3.9519 -15.3130 0.8370 23 1 1.8375 -14.6586 1.8284 24 6 2.9408 -5.5611 4.0464 25 6 2.0551 -4.4655 1.8602 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3431 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 3.0796 -0.6612 1.1757 33 1 1.5610 -0.3872 2.0629 34 1 0.5470 -2.3474 0.9324 35 1 2.0657 -2.6214 0.0452 36 1 2.0996 -2.2396 4.0741 37 1 0.6060 -1.9995 3.1256 38 1 0.9573 -4.0519 4.9879 39 1 -0.1853 -4.1431 3.6073 40 1 0.5571 -6.7219 4.0807 41 1 0.8313 -6.8363 2.2859 42 1 1.8610 -9.5526 3.3045 43 1 2.2988 -8.9723 1.6799 44 1 4.5295 -10.0326 1.9031 45 1 4.0911 -10.6126 3.5278 46 1 5.5632 -13.5673 1.8955 47 1 3.8961 -5.1551 3.7135 48 1 2.7998 -5.4900 5.1249 49 1 1.2452 -4.6762 1.1619 50 1 2.9992 -4.8528 1.4769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271255692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:53 Heat of formation + Delta-G solvation = -17.678175 kcal Electronic energy + Delta-G solvation = -25623.390047 eV Core-core repulsion = 22071.599679 eV Total energy + Delta-G solvation = -3551.790369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.95461 -39.97441 -38.77116 -37.31751 -35.58185 -33.28564 -32.73766 -30.18996 -29.82160 -28.48626 -28.08200 -27.07345 -26.25997 -24.69593 -23.23390 -22.60219 -21.29107 -20.31644 -19.56617 -18.75821 -17.62061 -17.28124 -17.10560 -16.73116 -16.56832 -16.37102 -15.99658 -15.80209 -15.50818 -15.30472 -14.61453 -14.41373 -14.31279 -14.22386 -14.04097 -13.80676 -13.38355 -13.27759 -13.24799 -12.99992 -12.80294 -12.77408 -12.61820 -12.52465 -12.46802 -12.16839 -12.07261 -11.95219 -11.82906 -11.75014 -11.66589 -11.41799 -11.33510 -10.61596 -10.57408 -9.70188 -9.35329 -9.22585 -8.18686 -6.33691 1.41216 1.46489 1.54251 1.67158 1.87085 2.42412 2.64639 3.13682 3.19158 3.41133 3.46552 3.69469 3.79952 4.04284 4.04798 4.12386 4.26519 4.32863 4.40831 4.47516 4.48549 4.49010 4.54003 4.57281 4.59109 4.62661 4.68120 4.69382 4.74682 4.85991 4.86154 4.88795 4.93685 4.97161 5.01169 5.02461 5.07013 5.12456 5.23409 5.29897 5.47134 5.59303 5.82640 5.94953 6.00204 6.09720 6.15344 6.19139 6.68119 6.85009 7.23791 7.36681 8.93934 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002222 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.924777 B =12599.685751 C =13064.382643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.565 5.565 3 C 0.026 3.974 4 C 0.067 3.933 5 C 0.061 3.939 6 N -0.543 5.543 7 C 0.043 3.957 8 C -0.116 4.116 9 C -0.089 4.089 10 C 0.120 3.880 11 N -0.653 5.653 12 C 0.528 3.472 13 O -0.597 6.597 14 C -0.109 4.109 15 C 0.043 3.957 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.977 3.023 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.261 1.261 24 C 0.118 3.882 25 C 0.072 3.928 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.099 0.901 44 H -0.020 1.020 45 H -0.020 1.020 46 H 0.263 0.737 47 H 0.062 0.938 48 H 0.100 0.900 49 H 0.067 0.933 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.164 29.529 0.206 34.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.122 4.122 4 C -0.061 4.061 5 C -0.067 4.067 6 N -0.268 5.268 7 C -0.084 4.084 8 C -0.154 4.154 9 C -0.091 4.091 10 C -0.002 4.002 11 N -0.389 5.389 12 C 0.320 3.680 13 O -0.478 6.478 14 C -0.149 4.149 15 C 0.006 3.994 16 C -0.582 4.582 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.213 1.213 23 H -0.185 1.185 24 C -0.004 4.004 25 C -0.055 4.055 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.117 0.883 44 H -0.002 1.002 45 H -0.001 1.001 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.118 0.882 49 H 0.085 0.915 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.610 29.165 -0.057 33.079 hybrid contribution -0.388 -0.793 0.340 0.946 sum -15.998 28.371 0.283 32.572 Atomic orbital electron populations 1.22471 0.86617 1.02613 1.00969 1.61897 1.08902 1.14745 1.43401 1.22390 1.00888 0.87938 1.01000 1.21971 1.00289 0.92692 0.91150 1.22164 0.97721 0.93275 0.93559 1.63485 1.55017 1.04634 1.03648 1.22950 0.96674 0.97275 0.91551 1.22552 0.99195 0.92021 1.01643 1.22262 0.95792 0.94733 0.96285 1.23305 0.82860 0.90087 1.03938 1.50415 1.13767 1.12112 1.62613 1.21098 0.85967 0.83697 0.77283 1.90644 1.19113 1.83535 1.54499 1.21536 0.99848 0.91593 1.01879 1.18684 0.93452 0.92618 0.94692 1.21661 0.97452 0.97802 1.41305 0.90517 1.26194 0.95392 1.02896 0.96130 1.70183 1.09278 1.29364 1.48952 0.85324 0.78035 0.77274 0.79299 1.18609 1.21296 1.18539 1.23070 0.98830 0.79347 0.99122 1.22476 1.00854 0.87059 0.95119 0.95260 0.90705 0.91132 0.91410 0.90482 0.95286 0.91132 0.94360 0.93591 0.91422 0.90500 0.91541 0.88666 0.88704 0.86639 0.88544 0.88105 0.88295 1.00206 1.00112 0.92813 0.91979 0.88224 0.91467 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 127.69 1.19 1.41 16 2 N -0.56 -7.79 5.02 -948.84 -4.76 -12.55 16 3 C 0.03 0.28 9.57 127.69 1.22 1.51 16 4 C 0.07 0.95 4.99 86.30 0.43 1.38 16 5 C 0.06 0.91 4.46 86.30 0.38 1.30 16 6 N -0.54 -8.97 5.16 -886.94 -4.58 -13.55 16 7 C 0.04 0.50 6.23 86.72 0.54 1.04 16 8 C -0.12 -1.13 6.35 31.36 0.20 -0.93 16 9 C -0.09 -1.45 0.99 -52.15 -0.05 -1.51 16 10 C 0.12 2.13 7.99 85.91 0.69 2.82 16 11 N -0.65 -19.47 3.62 -863.44 -3.12 -22.59 16 12 C 0.53 22.42 8.06 87.66 0.71 23.12 16 13 O -0.60 -32.12 16.71 -3.01 -0.05 -32.17 16 14 C -0.11 -4.67 5.38 29.85 0.16 -4.51 16 15 C 0.04 2.51 4.26 29.85 0.13 2.64 16 16 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 17 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 18 C -0.01 -0.52 5.46 84.66 0.46 -0.05 16 19 N -0.94 -60.80 13.29 21.45 0.28 -60.51 16 20 Si 0.98 44.88 29.54 68.60 2.03 46.91 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.12 2.79 8.14 85.91 0.70 3.49 16 25 C 0.07 1.33 6.09 86.20 0.53 1.86 16 26 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.07 0.67 8.12 -2.38 -0.02 0.65 16 28 H 0.07 0.72 6.47 -2.39 -0.02 0.70 16 29 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 30 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 33 H 0.04 0.50 7.12 -2.38 -0.02 0.48 16 34 H 0.05 0.60 6.37 -2.39 -0.02 0.58 16 35 H 0.07 1.22 8.07 -2.38 -0.02 1.20 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.63 6.91 -2.39 -0.02 0.62 16 38 H 0.09 0.74 7.99 -2.39 -0.02 0.72 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.54 8.12 -2.39 -0.02 1.52 16 42 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 43 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 44 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 45 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 46 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 47 H 0.06 1.74 8.12 -2.39 -0.02 1.73 16 48 H 0.10 1.98 8.04 -2.39 -0.02 1.96 16 49 H 0.07 1.08 7.80 -2.39 -0.02 1.06 16 50 H 0.06 1.42 8.07 -2.38 -0.02 1.40 16 Total: -1.00 -81.33 395.80 -1.81 -83.14 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.88 Total: 9.31 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 7.52 Total: 2.02 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -12.18 Total: -109.21 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.05 Total: -32.17 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -81.33 -1.81 -83.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271255692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.458 kcal (2) G-P(sol) polarization free energy of solvation -81.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds