Wall clock time and date at job start Fri Apr 10 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48532 * 110.99764 * 2 1 4 4 C 1.54937 * 103.23041 * 200.27774 * 3 2 1 5 5 C 1.54598 * 102.91814 * 37.41647 * 4 3 2 6 6 H 1.09004 * 110.39496 * 97.00261 * 5 4 3 7 7 C 1.53000 * 110.30831 * 219.12534 * 5 4 3 8 8 C 1.50692 * 109.47558 * 182.16813 * 7 5 4 9 9 O 1.21288 * 119.99956 * 0.02562 * 8 7 5 10 10 N 1.34773 * 120.00452 * 180.02562 * 8 7 5 11 11 C 1.46930 * 120.62922 * 354.93611 * 10 8 7 12 12 C 1.53192 * 108.77412 * 233.58522 * 11 10 8 13 13 C 1.53043 * 109.31370 * 305.36565 * 12 11 10 14 14 C 1.53039 * 109.53901 * 61.36613 * 13 12 11 15 15 C 1.46926 * 120.63254 * 174.65611 * 10 8 7 16 16 H 1.08998 * 109.58648 * 246.20498 * 15 10 8 17 17 C 1.53001 * 109.58542 * 6.62527 * 15 10 8 18 18 N 1.46500 * 109.47049 * 181.27217 * 17 15 10 19 19 C 1.36937 * 120.00150 * 185.48922 * 18 17 15 20 20 H 1.07999 * 119.99687 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00234 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00015 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00279 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46777 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47284 * 119.99823 * 23 21 19 26 26 H 1.48504 * 109.46775 * 239.99951 * 23 21 19 27 27 C 1.47902 * 111.00108 * 242.60802 * 2 1 3 28 28 H 1.09001 * 109.46814 * 177.39614 * 1 2 3 29 29 H 1.09000 * 109.47552 * 297.39363 * 1 2 3 30 30 H 1.08994 * 109.47358 * 57.40270 * 1 2 3 31 31 H 1.09005 * 110.66597 * 318.71584 * 3 2 1 32 32 H 1.09003 * 110.66657 * 81.67406 * 3 2 1 33 33 H 1.08998 * 110.72641 * 279.05637 * 4 3 2 34 34 H 1.09006 * 110.72554 * 155.76955 * 4 3 2 35 35 H 1.09006 * 109.47174 * 62.16920 * 7 5 4 36 36 H 1.09002 * 109.47290 * 302.17380 * 7 5 4 37 37 H 1.08992 * 109.58385 * 353.37433 * 11 10 8 38 38 H 1.08999 * 109.58554 * 113.65495 * 11 10 8 39 39 H 1.08999 * 109.49469 * 65.31870 * 12 11 10 40 40 H 1.08997 * 109.49514 * 185.41490 * 12 11 10 41 41 H 1.08999 * 109.45717 * 181.39020 * 13 12 11 42 42 H 1.09000 * 109.45535 * 301.34513 * 13 12 11 43 43 H 1.09002 * 109.49551 * 58.58812 * 14 13 12 44 44 H 1.08996 * 109.49654 * 178.64999 * 14 13 12 45 45 H 1.08991 * 109.47392 * 301.27916 * 17 15 10 46 46 H 1.09003 * 109.47173 * 61.28197 * 17 15 10 47 47 H 0.97008 * 120.00174 * 5.49527 * 18 17 15 48 48 H 0.97004 * 120.00422 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.92023 * 26.48420 * 27 2 1 50 50 H 1.09003 * 110.07811 * 265.28200 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2108 -0.5227 5 6 3.2982 0.1055 -1.5931 6 1 3.2142 0.5473 -2.5860 7 6 4.4896 -0.8529 -1.5383 8 6 4.3503 -1.8900 -2.6226 9 8 3.3926 -1.8649 -3.3664 10 7 5.2899 -2.8456 -2.7659 11 6 6.5094 -2.8251 -1.9468 12 6 7.7273 -2.8878 -2.8740 13 6 7.6048 -4.1088 -3.7885 14 6 6.3474 -3.9782 -4.6510 15 6 5.1113 -3.9310 -3.7400 16 1 5.0049 -4.8798 -3.2143 17 6 3.8615 -3.6646 -4.5813 18 7 3.6688 -4.7633 -5.5310 19 6 2.6740 -4.6908 -6.4693 20 1 2.0318 -3.8234 -6.5095 21 6 2.4911 -5.7320 -7.3688 22 7 3.2741 -6.7889 -7.3202 23 14 1.1346 -5.6329 -8.6493 24 1 0.4008 -4.3511 -8.4946 25 1 1.7302 -5.7020 -10.0078 26 1 0.1941 -6.7669 -8.4628 27 6 1.9990 -0.6353 -1.2260 28 1 -0.3633 -1.0266 -0.0467 29 1 -0.3634 0.4728 0.9124 30 1 -0.3634 0.5536 -0.8657 31 1 1.4235 2.0205 -0.6729 32 1 2.0011 1.7988 1.0091 33 1 4.1115 0.8838 0.2787 34 1 3.8121 2.1354 -0.9716 35 1 4.5157 -1.3450 -0.5660 36 1 5.4132 -0.2934 -1.6871 37 1 6.5418 -1.9055 -1.3627 38 1 6.5136 -3.6843 -1.2760 39 1 7.7704 -1.9825 -3.4795 40 1 8.6353 -2.9702 -2.2767 41 1 8.4822 -4.1696 -4.4324 42 1 7.5368 -5.0116 -3.1816 43 1 6.4036 -3.0626 -5.2399 44 1 6.2736 -4.8364 -5.3189 45 1 2.9921 -3.5924 -3.9279 46 1 3.9839 -2.7294 -5.1278 47 1 4.2458 -5.5422 -5.4952 48 1 3.1466 -7.5164 -7.9490 49 1 1.2758 -0.5402 -2.0359 50 1 2.2117 -1.6880 -1.0399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273010081.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:58 Heat of formation + Delta-G solvation = -9.680156 kcal Electronic energy + Delta-G solvation = -27092.511478 eV Core-core repulsion = 23541.067930 eV Total energy + Delta-G solvation = -3551.443549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49947 -38.99185 -37.11351 -34.76925 -33.46406 -32.67269 -31.90079 -30.02611 -29.61943 -27.49246 -26.09209 -25.00476 -24.23685 -22.99690 -21.36576 -21.23291 -20.84528 -20.02360 -18.66456 -17.03608 -16.70286 -16.32661 -15.73271 -15.54486 -15.07789 -14.47915 -14.34209 -14.30128 -14.12592 -13.72212 -13.68874 -13.29372 -13.08758 -12.99871 -12.85416 -12.63932 -12.47778 -12.00491 -11.80225 -11.62496 -11.55052 -11.51019 -11.27046 -10.97575 -10.91840 -10.84258 -10.76314 -10.71489 -10.65262 -10.47639 -10.28024 -9.91238 -9.61920 -8.81841 -8.67292 -8.54508 -8.24034 -6.71953 -5.63723 -2.89548 2.88972 3.14059 3.51559 3.57294 3.60289 3.94027 4.39401 4.47572 4.61206 4.73387 4.77472 4.81670 4.90987 5.05033 5.10451 5.21704 5.25915 5.30581 5.30974 5.35481 5.43024 5.44815 5.53108 5.58120 5.63433 5.66943 5.71125 5.74423 5.78861 5.84388 5.86238 5.88328 6.03999 6.05620 6.09107 6.17176 6.28006 6.32453 6.34588 6.61257 6.76599 6.82857 6.89748 7.17458 7.35197 7.67204 7.87356 8.46999 8.59203 9.66931 10.26959 10.61715 11.60046 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.004172 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.942393 B = 6710.359501 C = 8899.074218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.033 3.967 4 C -0.120 4.120 5 C -0.081 4.081 6 H 0.083 0.917 7 C -0.130 4.130 8 C 0.503 3.497 9 O -0.514 6.514 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.134 4.134 13 C -0.121 4.121 14 C -0.125 4.125 15 C 0.139 3.861 16 H 0.069 0.931 17 C 0.166 3.834 18 N -0.739 5.739 19 C -0.222 4.222 20 H 0.070 0.930 21 C -0.020 4.020 22 N -0.939 5.939 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.049 3.951 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.034 0.966 47 H 0.378 0.622 48 H 0.252 0.748 49 H 0.051 0.949 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 15.042 17.987 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.251 5.251 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.101 4.101 6 H 0.102 0.898 7 C -0.170 4.170 8 C 0.291 3.709 9 O -0.389 6.389 10 N -0.344 5.344 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.158 4.158 14 C -0.164 4.164 15 C 0.036 3.964 16 H 0.087 0.913 17 C 0.039 3.961 18 N -0.385 5.385 19 C -0.353 4.353 20 H 0.088 0.912 21 C -0.215 4.215 22 N -0.589 5.589 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.220 1.220 27 C -0.079 4.079 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.211 0.789 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.894 14.856 17.966 24.311 hybrid contribution -0.687 0.026 -1.462 1.616 sum 6.207 14.882 16.504 23.073 Atomic orbital electron populations 1.22500 0.88013 1.02247 1.00554 1.64776 1.08102 1.14543 1.37669 1.23231 0.95139 0.90340 1.00789 1.22573 0.96651 0.98298 0.98238 1.21762 0.93824 0.94858 0.99649 0.89826 1.21820 0.99859 0.96496 0.98848 1.20653 0.82574 0.82155 0.85493 1.90842 1.31488 1.72484 1.44048 1.48189 1.19737 1.26958 1.39503 1.21694 0.84272 1.02343 0.93138 1.21912 0.97246 0.99564 0.98481 1.21551 0.98549 0.97527 0.98216 1.21995 0.93032 1.03544 0.97791 1.21683 0.97078 0.88562 0.89038 0.91342 1.21266 0.92660 0.91132 0.91007 1.42601 1.39229 1.19618 1.37006 1.19281 1.07235 1.01907 1.06909 0.91219 1.24689 0.99769 0.96940 1.00082 1.69667 1.40906 1.08529 1.39804 0.86136 0.81608 0.77106 0.81575 1.20639 1.22053 1.22033 1.22864 0.95510 0.99267 0.90218 0.91208 0.91549 0.95374 0.93847 0.90237 0.90552 0.90982 0.88836 0.89244 0.90058 0.91516 0.91632 0.91124 0.91927 0.91934 0.91829 0.89727 0.93854 0.94810 0.78882 0.93830 0.93053 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 60.06 0.56 0.72 16 2 N -0.53 -5.96 5.55 -238.72 -1.33 -7.28 16 3 C 0.03 0.30 6.56 -1.90 -0.01 0.29 16 4 C -0.12 -1.00 6.61 -24.87 -0.16 -1.17 16 5 C -0.08 -0.89 2.62 -89.26 -0.23 -1.13 16 6 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 7 C -0.13 -1.34 3.30 -27.89 -0.09 -1.43 16 8 C 0.50 7.45 7.12 -10.99 -0.08 7.37 16 9 O -0.51 -9.81 10.48 5.55 0.06 -9.75 16 10 N -0.61 -8.58 2.97 -164.97 -0.49 -9.07 16 11 C 0.11 1.07 6.33 -3.71 -0.02 1.04 16 12 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 13 C -0.12 -1.45 5.88 -26.69 -0.16 -1.60 16 14 C -0.13 -2.03 5.17 -26.39 -0.14 -2.16 16 15 C 0.14 2.44 3.03 -67.37 -0.20 2.24 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 17 C 0.17 3.77 4.10 -4.04 -0.02 3.75 16 18 N -0.74 -19.89 5.29 -59.91 -0.32 -20.21 16 19 C -0.22 -6.62 9.99 -15.06 -0.15 -6.77 16 20 H 0.07 2.09 7.83 -52.49 -0.41 1.67 16 21 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 22 N -0.94 -29.32 13.06 55.49 0.72 -28.60 16 23 Si 0.90 23.55 29.55 -169.99 -5.02 18.52 16 24 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 C 0.05 0.63 5.28 -2.75 -0.01 0.61 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.28 8.00 -51.93 -0.42 -0.13 16 31 H 0.04 0.40 7.96 -51.93 -0.41 -0.02 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 37 H 0.08 0.59 5.96 -51.93 -0.31 0.29 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.08 1.57 7.31 -51.93 -0.38 1.19 16 45 H 0.04 1.08 6.34 -51.93 -0.33 0.75 16 46 H 0.03 0.84 7.13 -51.93 -0.37 0.47 16 47 H 0.38 10.41 6.90 -40.82 -0.28 10.13 16 48 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.05 0.75 7.73 -51.93 -0.40 0.34 16 50 H 0.08 1.15 7.28 -51.93 -0.38 0.77 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -33.89 376.96 -10.78 -44.67 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -9.11 Total: 6.40 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.98 Total: -0.37 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -1.41 Total: -65.16 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.06 Total: -9.75 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.89 -10.78 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273010081.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.990 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds