Wall clock time and date at job start Fri Apr 10 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48532 * 110.99764 * 2 1 4 4 C 1.54937 * 103.23041 * 200.27774 * 3 2 1 5 5 C 1.54598 * 102.91814 * 37.41647 * 4 3 2 6 6 H 1.09004 * 110.39496 * 97.00261 * 5 4 3 7 7 C 1.53000 * 110.30831 * 219.12534 * 5 4 3 8 8 C 1.50692 * 109.47558 * 182.16813 * 7 5 4 9 9 O 1.21288 * 119.99956 * 0.02562 * 8 7 5 10 10 N 1.34773 * 120.00452 * 180.02562 * 8 7 5 11 11 C 1.46930 * 120.62922 * 354.93611 * 10 8 7 12 12 C 1.53192 * 108.77412 * 233.58522 * 11 10 8 13 13 C 1.53043 * 109.31370 * 305.36565 * 12 11 10 14 14 C 1.53039 * 109.53901 * 61.36613 * 13 12 11 15 15 C 1.46926 * 120.63254 * 174.65611 * 10 8 7 16 16 H 1.08998 * 109.58648 * 246.20498 * 15 10 8 17 17 C 1.53001 * 109.58542 * 6.62527 * 15 10 8 18 18 N 1.46500 * 109.47049 * 181.27217 * 17 15 10 19 19 C 1.36937 * 120.00150 * 185.48922 * 18 17 15 20 20 H 1.07999 * 119.99687 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00234 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00015 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00279 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46777 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47284 * 119.99823 * 23 21 19 26 26 H 1.48504 * 109.46775 * 239.99951 * 23 21 19 27 27 C 1.47902 * 111.00108 * 242.60802 * 2 1 3 28 28 H 1.09001 * 109.46814 * 177.39614 * 1 2 3 29 29 H 1.09000 * 109.47552 * 297.39363 * 1 2 3 30 30 H 1.08994 * 109.47358 * 57.40270 * 1 2 3 31 31 H 1.09005 * 110.66597 * 318.71584 * 3 2 1 32 32 H 1.09003 * 110.66657 * 81.67406 * 3 2 1 33 33 H 1.08998 * 110.72641 * 279.05637 * 4 3 2 34 34 H 1.09006 * 110.72554 * 155.76955 * 4 3 2 35 35 H 1.09006 * 109.47174 * 62.16920 * 7 5 4 36 36 H 1.09002 * 109.47290 * 302.17380 * 7 5 4 37 37 H 1.08992 * 109.58385 * 353.37433 * 11 10 8 38 38 H 1.08999 * 109.58554 * 113.65495 * 11 10 8 39 39 H 1.08999 * 109.49469 * 65.31870 * 12 11 10 40 40 H 1.08997 * 109.49514 * 185.41490 * 12 11 10 41 41 H 1.08999 * 109.45717 * 181.39020 * 13 12 11 42 42 H 1.09000 * 109.45535 * 301.34513 * 13 12 11 43 43 H 1.09002 * 109.49551 * 58.58812 * 14 13 12 44 44 H 1.08996 * 109.49654 * 178.64999 * 14 13 12 45 45 H 1.08991 * 109.47392 * 301.27916 * 17 15 10 46 46 H 1.09003 * 109.47173 * 61.28197 * 17 15 10 47 47 H 0.97008 * 120.00174 * 5.49527 * 18 17 15 48 48 H 0.97004 * 120.00422 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.92023 * 26.48420 * 27 2 1 50 50 H 1.09003 * 110.07811 * 265.28200 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2108 -0.5227 5 6 3.2982 0.1055 -1.5931 6 1 3.2142 0.5473 -2.5860 7 6 4.4896 -0.8529 -1.5383 8 6 4.3503 -1.8900 -2.6226 9 8 3.3926 -1.8649 -3.3664 10 7 5.2899 -2.8456 -2.7659 11 6 6.5094 -2.8251 -1.9468 12 6 7.7273 -2.8878 -2.8740 13 6 7.6048 -4.1088 -3.7885 14 6 6.3474 -3.9782 -4.6510 15 6 5.1113 -3.9310 -3.7400 16 1 5.0049 -4.8798 -3.2143 17 6 3.8615 -3.6646 -4.5813 18 7 3.6688 -4.7633 -5.5310 19 6 2.6740 -4.6908 -6.4693 20 1 2.0318 -3.8234 -6.5095 21 6 2.4911 -5.7320 -7.3688 22 7 3.2741 -6.7889 -7.3202 23 14 1.1346 -5.6329 -8.6493 24 1 0.4008 -4.3511 -8.4946 25 1 1.7302 -5.7020 -10.0078 26 1 0.1941 -6.7669 -8.4628 27 6 1.9990 -0.6353 -1.2260 28 1 -0.3633 -1.0266 -0.0467 29 1 -0.3634 0.4728 0.9124 30 1 -0.3634 0.5536 -0.8657 31 1 1.4235 2.0205 -0.6729 32 1 2.0011 1.7988 1.0091 33 1 4.1115 0.8838 0.2787 34 1 3.8121 2.1354 -0.9716 35 1 4.5157 -1.3450 -0.5660 36 1 5.4132 -0.2934 -1.6871 37 1 6.5418 -1.9055 -1.3627 38 1 6.5136 -3.6843 -1.2760 39 1 7.7704 -1.9825 -3.4795 40 1 8.6353 -2.9702 -2.2767 41 1 8.4822 -4.1696 -4.4324 42 1 7.5368 -5.0116 -3.1816 43 1 6.4036 -3.0626 -5.2399 44 1 6.2736 -4.8364 -5.3189 45 1 2.9921 -3.5924 -3.9279 46 1 3.9839 -2.7294 -5.1278 47 1 4.2458 -5.5422 -5.4952 48 1 3.1466 -7.5164 -7.9490 49 1 1.2758 -0.5402 -2.0359 50 1 2.2117 -1.6880 -1.0399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273010081.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:58 Heat of formation + Delta-G solvation = -33.672533 kcal Electronic energy + Delta-G solvation = -27093.551866 eV Core-core repulsion = 23541.067930 eV Total energy + Delta-G solvation = -3552.483936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66034 -39.91327 -38.27948 -36.63545 -34.60090 -33.74640 -33.63236 -31.51113 -30.70409 -28.49393 -27.58812 -26.17439 -25.30627 -24.80940 -22.70849 -22.19488 -21.87710 -21.02950 -19.89048 -19.07653 -17.86540 -17.32126 -17.01199 -16.54440 -16.39393 -16.14992 -15.48437 -15.32940 -15.21081 -15.13559 -14.97762 -14.68253 -14.49306 -14.14972 -13.90551 -13.85053 -13.50871 -13.46957 -13.09157 -12.87767 -12.72804 -12.69380 -12.41676 -12.31823 -12.20186 -12.12909 -12.04057 -11.95800 -11.82489 -11.72482 -11.57489 -11.48677 -11.34626 -11.00240 -10.08156 -9.51895 -9.45942 -8.95554 -7.98430 -5.26155 1.41319 1.43022 1.53803 1.75855 2.01880 2.53961 3.09625 3.34257 3.49252 3.66012 3.71483 3.87609 3.89539 3.94461 4.06252 4.14552 4.16907 4.29825 4.35675 4.40097 4.43147 4.45372 4.53016 4.58191 4.63659 4.67515 4.72643 4.81682 4.85663 4.89933 4.92659 4.98840 5.00135 5.08703 5.10299 5.13668 5.19707 5.21994 5.28936 5.32693 5.33978 5.43738 5.49265 5.72088 5.89623 6.04141 6.24793 6.57338 7.30254 7.34178 8.05915 8.32857 9.25425 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.004172 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.942393 B = 6710.359501 C = 8899.074218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.533 5.533 3 C 0.029 3.971 4 C -0.107 4.107 5 C -0.082 4.082 6 H 0.061 0.939 7 C -0.115 4.115 8 C 0.492 3.508 9 O -0.570 6.570 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.116 4.116 14 C -0.118 4.118 15 C 0.148 3.852 16 H 0.065 0.935 17 C 0.180 3.820 18 N -0.746 5.746 19 C -0.242 4.242 20 H 0.060 0.940 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.287 1.287 27 C 0.053 3.947 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.020 0.980 46 H 0.009 0.991 47 H 0.372 0.628 48 H 0.253 0.747 49 H 0.018 0.982 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.444 16.690 20.359 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.257 5.257 3 C -0.098 4.098 4 C -0.145 4.145 5 C -0.101 4.101 6 H 0.080 0.920 7 C -0.154 4.154 8 C 0.283 3.717 9 O -0.449 6.449 10 N -0.342 5.342 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.156 4.156 15 C 0.044 3.956 16 H 0.083 0.917 17 C 0.055 3.945 18 N -0.391 5.391 19 C -0.374 4.374 20 H 0.078 0.922 21 C -0.264 4.264 22 N -0.618 5.618 23 Si 0.801 3.199 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.214 1.214 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.205 0.795 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.950 16.532 20.385 27.730 hybrid contribution -1.356 -0.481 -2.185 2.616 sum 7.594 16.051 18.200 25.427 Atomic orbital electron populations 1.22531 0.87725 1.01821 1.01351 1.64789 1.08565 1.16104 1.36252 1.23371 0.95586 0.88904 1.01978 1.22575 0.96433 0.97863 0.97631 1.21737 0.93081 0.95732 0.99589 0.92022 1.21822 1.00933 0.95069 0.97611 1.21618 0.81627 0.82660 0.85840 1.90825 1.33695 1.73960 1.46375 1.48315 1.21397 1.25536 1.38931 1.22120 0.81940 1.05001 0.92925 1.21913 0.98668 0.97762 0.98194 1.21535 0.96058 0.99470 0.98257 1.21867 0.94925 1.01163 0.97689 1.21283 0.95047 0.89800 0.89461 0.91729 1.21087 0.94699 0.88652 0.90100 1.42757 1.38536 1.20443 1.37362 1.19515 1.07975 1.01855 1.08015 0.92226 1.25509 1.02260 0.96526 1.02094 1.69809 1.42342 1.09040 1.40599 0.85086 0.78683 0.77295 0.78792 1.19962 1.21297 1.21418 1.22718 0.96188 0.98667 0.89967 0.92241 0.89435 0.95918 0.94208 0.88208 0.88520 0.89112 0.86535 0.85600 0.86329 0.90045 0.91996 0.87354 0.90879 0.91182 0.93508 0.92998 0.96262 0.97298 0.79547 0.93822 0.96386 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.40 127.69 1.20 1.49 16 2 N -0.53 -11.70 5.55 -909.17 -5.05 -16.75 16 3 C 0.03 0.47 6.56 86.65 0.57 1.03 16 4 C -0.11 -1.45 6.61 31.80 0.21 -1.24 16 5 C -0.08 -1.71 2.62 -9.91 -0.03 -1.74 16 6 H 0.06 1.56 8.00 -2.39 -0.02 1.55 16 7 C -0.11 -2.06 3.30 29.85 0.10 -1.96 16 8 C 0.49 14.58 7.12 87.66 0.62 15.21 16 9 O -0.57 -23.30 10.48 -3.05 -0.03 -23.33 16 10 N -0.61 -16.65 2.97 -794.23 -2.36 -19.00 16 11 C 0.10 1.59 6.33 86.36 0.55 2.14 16 12 C -0.13 -1.95 6.08 30.67 0.19 -1.77 16 13 C -0.12 -2.56 5.88 30.62 0.18 -2.38 16 14 C -0.12 -3.93 5.17 30.82 0.16 -3.77 16 15 C 0.15 5.39 3.03 45.12 0.14 5.53 16 16 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 17 C 0.18 8.81 4.10 86.38 0.35 9.17 16 18 N -0.75 -42.65 5.29 -343.46 -1.82 -44.47 16 19 C -0.24 -15.10 9.99 84.03 0.84 -14.26 16 20 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 22 N -0.97 -61.87 13.06 21.65 0.28 -61.58 16 23 Si 0.97 49.51 29.55 68.60 2.03 51.53 16 24 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 27 C 0.05 1.41 5.28 86.45 0.46 1.87 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.02 0.47 8.00 -2.39 -0.02 0.46 16 31 H 0.04 0.67 7.96 -2.38 -0.02 0.65 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 0.97 7.86 -2.39 -0.02 0.95 16 34 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.12 1.65 8.11 -2.38 -0.02 1.63 16 36 H 0.13 1.41 7.48 -2.39 -0.02 1.39 16 37 H 0.12 1.04 5.96 -2.39 -0.01 1.03 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 2.04 7.31 -2.39 -0.02 2.02 16 45 H 0.02 1.05 6.34 -2.39 -0.02 1.04 16 46 H 0.01 0.48 7.13 -2.39 -0.02 0.46 16 47 H 0.37 21.72 6.90 -92.70 -0.64 21.08 16 48 H 0.25 15.48 8.31 -92.71 -0.77 14.70 16 49 H 0.02 0.58 7.73 -2.39 -0.02 0.56 16 50 H 0.06 1.75 7.28 -2.39 -0.02 1.73 16 Total: -1.00 -79.73 376.96 -0.68 -80.41 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.26 Total: 27.83 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.00 Total: 5.37 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -8.94 Total: -141.81 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.03 Total: -23.33 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.03 Total: 51.53 kcal Total: -79.73 -0.68 -80.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273010081.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.735 kcal (2) G-P(sol) polarization free energy of solvation -79.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds