Wall clock time and date at job start Fri Apr 10 2020 18:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47844 * 110.99864 * 2 1 4 4 C 1.55115 * 104.90272 * 146.24336 * 3 2 1 5 5 C 1.55139 * 101.55924 * 323.15761 * 4 3 2 6 6 H 1.08997 * 110.71044 * 276.96753 * 5 4 3 7 7 C 1.53000 * 110.70501 * 153.90670 * 5 4 3 8 8 C 1.50698 * 109.47144 * 177.40623 * 7 5 4 9 9 O 1.21276 * 120.00206 * 0.02562 * 8 7 5 10 10 N 1.34781 * 120.00074 * 179.97438 * 8 7 5 11 11 C 1.46924 * 120.62990 * 354.93833 * 10 8 7 12 12 C 1.53187 * 108.77551 * 233.58314 * 11 10 8 13 13 C 1.53043 * 109.31431 * 305.36346 * 12 11 10 14 14 C 1.53041 * 109.53492 * 61.36359 * 13 12 11 15 15 C 1.46928 * 120.63198 * 174.65363 * 10 8 7 16 16 H 1.09002 * 109.58637 * 246.20581 * 15 10 8 17 17 C 1.52999 * 109.58371 * 6.62971 * 15 10 8 18 18 N 1.46500 * 109.47117 * 181.27620 * 17 15 10 19 19 C 1.36934 * 120.00149 * 185.48781 * 18 17 15 20 20 H 1.07991 * 120.00074 * 0.02562 * 19 18 17 21 21 C 1.38820 * 119.99903 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99876 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99859 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47390 * 90.00359 * 23 21 19 25 25 H 1.48500 * 109.46987 * 210.00145 * 23 21 19 26 26 H 1.48504 * 109.47370 * 329.99730 * 23 21 19 27 27 C 1.47443 * 111.00166 * 120.84750 * 2 1 3 28 28 H 1.09004 * 109.47033 * 299.15324 * 1 2 3 29 29 H 1.08995 * 109.47306 * 59.15649 * 1 2 3 30 30 H 1.09003 * 109.47302 * 179.15659 * 1 2 3 31 31 H 1.08991 * 110.37559 * 265.19623 * 3 2 1 32 32 H 1.09004 * 110.37043 * 27.42916 * 3 2 1 33 33 H 1.08997 * 111.14800 * 205.05245 * 4 3 2 34 34 H 1.09001 * 110.92437 * 81.17136 * 4 3 2 35 35 H 1.08997 * 109.47383 * 57.40371 * 7 5 4 36 36 H 1.09000 * 109.47327 * 297.40285 * 7 5 4 37 37 H 1.09007 * 109.58769 * 353.36779 * 11 10 8 38 38 H 1.08998 * 109.59119 * 113.65111 * 11 10 8 39 39 H 1.09006 * 109.49993 * 65.31566 * 12 11 10 40 40 H 1.09008 * 109.49880 * 185.41316 * 12 11 10 41 41 H 1.09004 * 109.46178 * 181.38647 * 13 12 11 42 42 H 1.08995 * 109.45904 * 301.36214 * 13 12 11 43 43 H 1.09001 * 109.49904 * 58.58833 * 14 13 12 44 44 H 1.09003 * 109.49750 * 178.65413 * 14 13 12 45 45 H 1.08995 * 109.47601 * 301.27720 * 17 15 10 46 46 H 1.09000 * 109.47174 * 61.27870 * 17 15 10 47 47 H 0.97006 * 119.99933 * 5.48990 * 18 17 15 48 48 H 0.96994 * 120.00012 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.88697 * 117.33416 * 27 2 1 50 50 H 1.08997 * 110.02330 * 356.22518 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3053 1.3061 0.8329 5 6 2.9159 0.2821 1.9314 6 1 2.3753 0.7722 2.7411 7 6 4.1570 -0.4339 2.4679 8 6 3.7554 -1.3739 3.5751 9 8 2.5911 -1.4628 3.9027 10 7 4.6900 -2.1166 4.2008 11 6 6.0860 -2.1043 3.7428 12 6 6.5362 -3.5473 3.4945 13 6 6.2966 -4.3768 4.7581 14 6 4.8022 -4.3870 5.0879 15 6 4.3335 -2.9492 5.3578 16 1 4.8248 -2.5633 6.2510 17 6 2.8163 -2.9307 5.5549 18 7 2.4663 -3.7367 6.7270 19 6 1.1512 -3.9604 7.0362 20 1 0.3721 -3.5429 6.4158 21 6 0.8195 -4.7238 8.1472 22 7 -0.4445 -4.9392 8.4442 23 14 2.1673 -5.4464 9.2199 24 1 2.5144 -4.4827 10.2951 25 1 1.6898 -6.7147 9.8273 26 1 3.3689 -5.7166 8.3903 27 6 1.9974 -0.7058 1.1818 28 1 -0.3633 0.5006 0.8975 29 1 -0.3634 0.5268 -0.8823 30 1 -0.3634 -1.0276 -0.0151 31 1 2.2147 1.7039 -1.0181 32 1 1.2880 2.0595 0.4707 33 1 3.5482 2.2744 1.2704 34 1 4.1321 0.9342 0.2279 35 1 4.8626 0.3018 2.8539 36 1 4.6263 -0.9999 1.6632 37 1 6.1619 -1.5335 2.8172 38 1 6.7170 -1.6486 4.5058 39 1 5.9644 -3.9698 2.6681 40 1 7.5977 -3.5598 3.2469 41 1 6.6389 -5.3984 4.5922 42 1 6.8488 -3.9393 5.5897 43 1 4.2468 -4.8015 4.2466 44 1 4.6294 -4.9976 5.9742 45 1 2.4821 -1.9044 5.7067 46 1 2.3301 -3.3441 4.6713 47 1 3.1661 -4.1120 7.2841 48 1 -0.6763 -5.4728 9.2202 49 1 2.5697 -1.5785 0.8672 50 1 1.1772 -1.0144 1.8299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273010082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:01 Heat of formation + Delta-G solvation = -5.863639 kcal Electronic energy + Delta-G solvation = -27181.886923 eV Core-core repulsion = 23630.608871 eV Total energy + Delta-G solvation = -3551.278052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58069 -39.03874 -37.22379 -34.97668 -33.47289 -32.76835 -31.95018 -30.27816 -29.87197 -27.57114 -26.32250 -25.07977 -24.37180 -22.78267 -21.30269 -21.18509 -20.95421 -20.12873 -18.86572 -17.56884 -16.69566 -16.42332 -15.83118 -15.43607 -15.26032 -14.53565 -14.32663 -14.26212 -14.21977 -13.86005 -13.57424 -13.46267 -13.37153 -13.26895 -12.69527 -12.66257 -12.60588 -12.07724 -11.99503 -11.68328 -11.66933 -11.45462 -11.36006 -11.25311 -11.02647 -10.93852 -10.86144 -10.76510 -10.73848 -10.59910 -10.32205 -10.11759 -9.47285 -8.91272 -8.75546 -8.44198 -8.34126 -7.04610 -5.64528 -2.98028 2.80117 3.02340 3.41978 3.44746 3.50396 3.92780 4.31070 4.45112 4.61978 4.66616 4.68498 4.74782 4.81020 4.93988 5.09027 5.13310 5.17258 5.26864 5.29426 5.29880 5.35631 5.41650 5.46597 5.50108 5.55317 5.59977 5.64860 5.70801 5.71656 5.74261 5.80701 5.85473 5.90820 5.92104 5.95170 6.05019 6.12859 6.16878 6.21610 6.45661 6.63795 6.85182 6.95345 7.04157 7.22845 7.55862 8.14288 8.40336 8.55751 9.35044 10.07147 10.27619 11.54700 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.004079 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.217495 B = 6863.357260 C = 8567.105806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.538 5.538 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.092 4.092 6 H 0.085 0.915 7 C -0.128 4.128 8 C 0.504 3.496 9 O -0.510 6.510 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.134 4.134 13 C -0.121 4.121 14 C -0.128 4.128 15 C 0.136 3.864 16 H 0.068 0.932 17 C 0.169 3.831 18 N -0.762 5.762 19 C -0.229 4.229 20 H 0.090 0.910 21 C -0.001 4.001 22 N -0.939 5.939 23 Si 0.884 3.116 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.050 3.950 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.354 0.646 48 H 0.257 0.743 49 H 0.073 0.927 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.231 11.204 -17.404 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.164 4.164 5 C -0.112 4.112 6 H 0.103 0.897 7 C -0.169 4.169 8 C 0.292 3.708 9 O -0.385 6.385 10 N -0.345 5.345 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.159 4.159 14 C -0.167 4.167 15 C 0.033 3.967 16 H 0.086 0.914 17 C 0.043 3.957 18 N -0.409 5.409 19 C -0.359 4.359 20 H 0.108 0.892 21 C -0.196 4.196 22 N -0.588 5.588 23 Si 0.714 3.286 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.205 1.205 27 C -0.077 4.077 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.186 0.814 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.479 10.916 -17.722 25.939 hybrid contribution 0.761 -0.302 1.660 1.851 sum 16.241 10.614 -16.062 25.188 Atomic orbital electron populations 1.22538 0.87652 1.02340 1.00402 1.63593 1.08100 1.13995 1.40520 1.23065 0.95572 0.89911 1.00156 1.22819 0.97794 0.99097 0.96656 1.22145 0.95407 0.95996 0.97676 0.89674 1.21737 0.99195 0.98351 0.97583 1.20666 0.85807 0.81061 0.83305 1.90849 1.18101 1.65981 1.63533 1.48155 1.08597 1.45665 1.32044 1.21700 0.82332 0.97404 0.99996 1.21912 1.01107 0.95331 0.98881 1.21552 0.97053 0.99951 0.97310 1.22030 0.94901 0.96745 1.02993 1.21703 0.98753 0.89612 0.86626 0.91430 1.21277 0.88433 0.95950 0.89995 1.42969 1.04850 1.62868 1.30254 1.19068 0.82816 1.25844 1.08150 0.89233 1.24661 0.95647 1.00744 0.98547 1.69704 1.15038 1.44707 1.29358 0.86554 0.82078 0.78855 0.81068 1.21274 1.21880 1.20508 1.22872 0.98754 0.96539 0.89580 0.95241 0.91699 0.91210 0.90429 0.93620 0.90774 0.90578 0.89089 0.88951 0.89903 0.91546 0.91430 0.91013 0.91829 0.92000 0.91337 0.90379 0.93128 0.93923 0.81357 0.93268 0.90915 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.12 60.07 0.55 0.75 16 2 N -0.54 -6.16 5.45 -239.38 -1.30 -7.46 16 3 C 0.04 0.38 6.73 -2.19 -0.01 0.36 16 4 C -0.13 -1.03 6.54 -24.48 -0.16 -1.19 16 5 C -0.09 -0.99 2.52 -88.80 -0.22 -1.21 16 6 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 7 C -0.13 -1.23 3.50 -27.88 -0.10 -1.33 16 8 C 0.50 7.10 7.42 -10.98 -0.08 7.02 16 9 O -0.51 -9.48 10.39 5.56 0.06 -9.43 16 10 N -0.61 -8.03 2.97 -164.97 -0.49 -8.52 16 11 C 0.11 0.97 6.32 -3.71 -0.02 0.95 16 12 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 13 C -0.12 -1.32 5.88 -26.69 -0.16 -1.48 16 14 C -0.13 -1.93 5.17 -26.39 -0.14 -2.07 16 15 C 0.14 2.23 3.03 -67.38 -0.20 2.03 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 17 C 0.17 3.69 4.10 -4.04 -0.02 3.67 16 18 N -0.76 -19.30 5.10 -59.91 -0.31 -19.61 16 19 C -0.23 -6.89 10.47 -15.06 -0.16 -7.05 16 20 H 0.09 2.94 8.06 -52.49 -0.42 2.52 16 21 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 22 N -0.94 -30.74 13.97 55.49 0.78 -29.97 16 23 Si 0.88 22.84 27.73 -169.99 -4.71 18.13 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 27 C 0.05 0.63 5.61 -2.83 -0.02 0.61 16 28 H 0.03 0.32 8.10 -51.93 -0.42 -0.10 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.42 7.78 -51.93 -0.40 0.02 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 36 H 0.09 0.74 7.34 -51.93 -0.38 0.36 16 37 H 0.08 0.54 5.96 -51.92 -0.31 0.23 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.31 7.31 -51.93 -0.38 0.93 16 45 H 0.05 1.21 6.34 -51.93 -0.33 0.88 16 46 H 0.04 1.02 7.13 -51.93 -0.37 0.65 16 47 H 0.35 8.56 4.77 -40.82 -0.19 8.36 16 48 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 49 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 50 H 0.07 1.05 7.21 -51.93 -0.37 0.67 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -34.92 374.05 -10.40 -45.32 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -9.06 Total: 6.31 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.00 Total: -0.41 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -1.32 Total: -65.56 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.43 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.92 -10.40 -45.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273010082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.457 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds