Wall clock time and date at job start Fri Apr 10 2020 18:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99812 * 2 1 4 4 C 1.46898 * 111.00029 * 123.95513 * 2 1 3 5 5 C 1.53007 * 109.47191 * 66.04823 * 4 2 1 6 6 N 1.46899 * 109.46957 * 184.82122 * 5 4 2 7 7 C 1.48048 * 110.99940 * 184.16941 * 6 5 4 8 8 C 1.54255 * 106.83701 * 146.61034 * 7 6 5 9 9 C 1.54367 * 104.82564 * 358.55205 * 8 7 6 10 10 H 1.09000 * 110.03991 * 94.66089 * 9 8 7 11 11 C 1.48926 * 111.00163 * 301.19483 * 6 5 4 12 12 H 1.08993 * 112.07885 * 78.73536 * 11 6 5 13 13 C 1.53105 * 107.98339 * 314.47966 * 11 6 5 14 14 C 1.52924 * 109.18950 * 184.13482 * 13 11 6 15 15 C 1.50305 * 109.41827 * 52.12739 * 14 13 11 16 16 O 1.21283 * 118.67424 * 159.18926 * 15 14 13 17 17 N 1.35159 * 123.18270 * 338.93155 * 15 14 13 18 18 C 1.46497 * 118.78095 * 180.73808 * 17 15 14 19 19 C 1.53008 * 109.46732 * 270.04899 * 18 17 15 20 20 C 1.50703 * 109.47011 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99840 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99864 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00051 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99690 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47212 * 120.00457 * 24 22 20 27 27 H 1.48497 * 109.47038 * 240.00310 * 24 22 20 28 28 H 1.08995 * 109.47083 * 296.04212 * 1 2 3 29 29 H 1.09001 * 109.46994 * 56.04716 * 1 2 3 30 30 H 1.08997 * 109.46937 * 176.04348 * 1 2 3 31 31 H 1.08999 * 109.46958 * 183.95449 * 3 2 1 32 32 H 1.08994 * 109.47506 * 303.95343 * 3 2 1 33 33 H 1.08996 * 109.47080 * 63.95981 * 3 2 1 34 34 H 1.09001 * 109.47519 * 306.04504 * 4 2 1 35 35 H 1.09006 * 109.47071 * 186.04639 * 4 2 1 36 36 H 1.09000 * 109.47077 * 64.82291 * 5 4 2 37 37 H 1.08997 * 109.46517 * 304.82169 * 5 4 2 38 38 H 1.09004 * 109.98808 * 27.26915 * 7 6 5 39 39 H 1.09003 * 109.99404 * 265.95773 * 7 6 5 40 40 H 1.09000 * 110.37401 * 239.71472 * 8 7 6 41 41 H 1.09004 * 110.46285 * 117.43776 * 8 7 6 42 42 H 1.09003 * 109.51934 * 304.04732 * 13 11 6 43 43 H 1.08994 * 109.52112 * 64.16110 * 13 11 6 44 44 H 1.09005 * 109.47862 * 172.11075 * 14 13 11 45 45 H 1.09001 * 109.47834 * 292.14351 * 14 13 11 46 46 H 1.09006 * 109.47541 * 30.04533 * 18 17 15 47 47 H 1.08997 * 109.47627 * 150.05122 * 18 17 15 48 48 H 1.09000 * 109.47167 * 299.99836 * 19 18 17 49 49 H 1.08999 * 109.47103 * 60.00266 * 19 18 17 50 50 H 0.97004 * 119.99744 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 7 2.0564 -2.9897 2.1616 7 6 1.8104 -4.4400 1.9942 8 6 2.9383 -5.1744 2.7480 9 6 3.8370 -4.0505 3.3065 10 1 3.5471 -3.8145 4.3304 11 6 3.5236 -2.8569 2.3798 12 1 3.7849 -1.9033 2.8384 13 6 4.2225 -3.0661 1.0337 14 6 5.7369 -3.0380 1.2440 15 6 6.1080 -4.0032 2.3347 16 8 7.2503 -4.4068 2.3908 17 7 5.2303 -4.4426 3.2639 18 6 5.7003 -5.3714 4.2946 19 6 5.5241 -6.8098 3.8036 20 6 6.0082 -7.7654 4.8636 21 1 6.4017 -7.3848 5.7946 22 6 5.9477 -9.1254 4.6454 23 7 5.4680 -9.5888 3.5119 24 14 6.5471 -10.3098 5.9597 25 1 7.0356 -9.5415 7.1328 26 1 5.4286 -11.1927 6.3776 27 1 7.6530 -11.1368 5.4136 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 2.1356 -2.6438 0.0910 37 1 0.5529 -2.3392 0.8463 38 1 1.8367 -4.7027 0.9366 39 1 0.8430 -4.7056 2.4204 40 1 3.5032 -5.8068 2.0631 41 1 2.5268 -5.7711 3.5621 42 1 3.9304 -4.0304 0.6177 43 1 3.9345 -2.2708 0.3463 44 1 6.2377 -3.3245 0.3191 45 1 6.0458 -2.0320 1.5282 46 1 6.7545 -5.1840 4.4994 47 1 5.1215 -5.2254 5.2066 48 1 4.4701 -6.9973 3.5989 49 1 6.1030 -6.9559 2.8916 50 1 5.4258 -10.5456 3.3582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273107783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:03 Heat of formation + Delta-G solvation = -18.464445 kcal Electronic energy + Delta-G solvation = -27269.646679 eV Core-core repulsion = 23717.822215 eV Total energy + Delta-G solvation = -3551.824464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95006 -38.71147 -37.49573 -35.28419 -33.57121 -32.80482 -31.77473 -29.40476 -28.22493 -27.99266 -27.80411 -25.04101 -24.12533 -23.68366 -22.05046 -21.32998 -20.73609 -19.96114 -17.95333 -16.64724 -16.48633 -16.34279 -16.13482 -15.46697 -15.43769 -15.05492 -14.83905 -14.45449 -14.27643 -14.09577 -13.76349 -13.16897 -12.99622 -12.70428 -12.67044 -12.56472 -12.43532 -12.28818 -12.08649 -11.96243 -11.76752 -11.52195 -11.41986 -11.26445 -11.18398 -10.96234 -10.90791 -10.78384 -10.62640 -10.48056 -9.80472 -9.78716 -9.29623 -8.98734 -8.71350 -8.50135 -8.32126 -7.97345 -5.98351 -4.00384 3.05745 3.32514 3.33026 3.40431 3.44553 3.56138 4.06795 4.45426 4.48104 4.49519 4.72370 4.78553 4.81482 4.83990 4.99350 5.05353 5.15877 5.20285 5.20948 5.30278 5.32497 5.33752 5.36352 5.38421 5.48586 5.52804 5.54463 5.65580 5.68392 5.76623 5.82146 5.87516 5.92729 6.09931 6.20612 6.27043 6.39862 6.58173 6.61009 6.65593 6.72089 6.88104 6.93591 7.03059 7.67924 7.78019 8.03105 8.07543 8.40788 8.68035 9.06467 9.63037 11.13103 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.003143 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.105788 B = 8906.680108 C = 9538.853002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.054 3.946 5 C 0.046 3.954 6 N -0.510 5.510 7 C 0.039 3.961 8 C -0.142 4.142 9 C 0.149 3.851 10 H 0.090 0.910 11 C 0.058 3.942 12 H 0.102 0.898 13 C -0.152 4.152 14 C -0.126 4.126 15 C 0.509 3.491 16 O -0.544 6.544 17 N -0.597 5.597 18 C 0.114 3.886 19 C 0.013 3.987 20 C -0.518 4.518 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.892 3.108 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.022 0.978 49 H 0.019 0.981 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 20.666 -7.040 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.082 4.082 6 N -0.234 5.234 7 C -0.089 4.089 8 C -0.182 4.182 9 C 0.043 3.957 10 H 0.108 0.892 11 C -0.050 4.050 12 H 0.120 0.880 13 C -0.191 4.191 14 C -0.167 4.167 15 C 0.297 3.703 16 O -0.421 6.421 17 N -0.329 5.329 18 C -0.007 4.007 19 C -0.025 4.025 20 C -0.557 4.557 21 H 0.074 0.926 22 C -0.143 4.143 23 N -0.533 5.533 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.210 1.210 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.040 0.960 49 H 0.037 0.963 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.117 20.295 -7.099 24.204 hybrid contribution 0.298 -0.747 0.636 1.025 sum -10.819 19.548 -6.463 23.258 Atomic orbital electron populations 1.22449 0.87380 1.02481 1.00433 1.61925 1.08130 1.13883 1.43313 1.22368 1.00854 0.88607 1.00474 1.22180 1.00357 0.93249 0.91592 1.22277 1.01044 0.92983 0.91944 1.65004 1.13682 1.08564 1.36115 1.22932 0.99888 0.86778 0.99325 1.22980 0.96016 0.97975 1.01186 1.21325 0.81587 0.93036 0.99734 0.89224 1.23047 0.88008 0.98961 0.95002 0.87978 1.22271 0.94886 1.03481 0.98425 1.21522 0.96800 0.99756 0.98624 1.20532 0.85239 0.81976 0.82516 1.90719 1.19980 1.57670 1.73751 1.47643 1.08485 1.46513 1.30239 1.21887 0.99657 0.90916 0.88244 1.19431 0.97488 0.88451 0.97121 1.21157 1.41497 0.91063 1.01937 0.92598 1.24984 0.95360 0.98427 0.95531 1.69981 1.46198 1.13295 1.23833 0.86531 0.78451 0.81062 0.81919 1.19708 1.21069 1.21027 0.95509 0.91524 0.91027 0.91282 0.91360 0.95617 0.93768 0.90503 0.93038 0.90535 0.93500 0.90049 0.89973 0.89884 0.90751 0.90010 0.88408 0.88782 0.90946 0.92006 0.96012 0.96278 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.33 60.06 0.56 0.70 16 2 N -0.55 -4.43 5.02 -251.26 -1.26 -5.69 16 3 C 0.03 0.17 9.57 60.06 0.57 0.74 16 4 C 0.05 0.46 4.41 -3.82 -0.02 0.44 16 5 C 0.05 0.42 4.35 -3.82 -0.02 0.40 16 6 N -0.51 -5.42 5.34 -222.33 -1.19 -6.60 16 7 C 0.04 0.45 5.98 -2.53 -0.02 0.43 16 8 C -0.14 -2.09 4.54 -25.36 -0.12 -2.20 16 9 C 0.15 2.13 3.15 -67.42 -0.21 1.92 16 10 H 0.09 1.25 7.98 -51.93 -0.41 0.83 16 11 C 0.06 0.66 2.52 -65.84 -0.17 0.49 16 12 H 0.10 1.05 7.66 -51.93 -0.40 0.66 16 13 C -0.15 -1.69 3.87 -26.72 -0.10 -1.79 16 14 C -0.13 -1.63 6.07 -28.11 -0.17 -1.80 16 15 C 0.51 9.35 7.54 -11.00 -0.08 9.27 16 16 O -0.54 -12.60 16.34 5.56 0.09 -12.51 16 17 N -0.60 -10.68 2.50 -165.77 -0.41 -11.10 16 18 C 0.11 2.45 5.13 -4.04 -0.02 2.43 16 19 C 0.01 0.34 5.03 -27.88 -0.14 0.20 16 20 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 24 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 0.49 6.37 -51.93 -0.33 0.16 16 31 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.08 0.65 6.01 -51.93 -0.31 0.33 16 36 H 0.05 0.50 6.14 -51.93 -0.32 0.18 16 37 H 0.08 0.68 6.34 -51.93 -0.33 0.35 16 38 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.44 7.49 -51.93 -0.39 1.05 16 41 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 42 H 0.07 0.94 6.57 -51.93 -0.34 0.60 16 43 H 0.08 0.78 5.43 -51.93 -0.28 0.49 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.68 7.26 -51.93 -0.38 1.31 16 47 H 0.06 1.22 7.88 -51.93 -0.41 0.81 16 48 H 0.02 0.57 6.28 -51.93 -0.33 0.25 16 49 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -32.96 373.62 -10.56 -43.52 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.79 Total: -1.50 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.34 Total: -2.31 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -2.13 Total: -49.79 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.96 -10.56 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273107783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.051 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds