Wall clock time and date at job start Fri Apr 10 2020 18:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99812 * 2 1 4 4 C 1.46898 * 111.00029 * 123.95513 * 2 1 3 5 5 C 1.53007 * 109.47191 * 66.04823 * 4 2 1 6 6 N 1.46899 * 109.46957 * 184.82122 * 5 4 2 7 7 C 1.48048 * 110.99940 * 184.16941 * 6 5 4 8 8 C 1.54255 * 106.83701 * 146.61034 * 7 6 5 9 9 C 1.54367 * 104.82564 * 358.55205 * 8 7 6 10 10 H 1.09000 * 110.03991 * 94.66089 * 9 8 7 11 11 C 1.48926 * 111.00163 * 301.19483 * 6 5 4 12 12 H 1.08993 * 112.07885 * 78.73536 * 11 6 5 13 13 C 1.53105 * 107.98339 * 314.47966 * 11 6 5 14 14 C 1.52924 * 109.18950 * 184.13482 * 13 11 6 15 15 C 1.50305 * 109.41827 * 52.12739 * 14 13 11 16 16 O 1.21283 * 118.67424 * 159.18926 * 15 14 13 17 17 N 1.35159 * 123.18270 * 338.93155 * 15 14 13 18 18 C 1.46497 * 118.78095 * 180.73808 * 17 15 14 19 19 C 1.53008 * 109.46732 * 270.04899 * 18 17 15 20 20 C 1.50703 * 109.47011 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99840 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99864 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00051 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99690 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47212 * 120.00457 * 24 22 20 27 27 H 1.48497 * 109.47038 * 240.00310 * 24 22 20 28 28 H 1.08995 * 109.47083 * 296.04212 * 1 2 3 29 29 H 1.09001 * 109.46994 * 56.04716 * 1 2 3 30 30 H 1.08997 * 109.46937 * 176.04348 * 1 2 3 31 31 H 1.08999 * 109.46958 * 183.95449 * 3 2 1 32 32 H 1.08994 * 109.47506 * 303.95343 * 3 2 1 33 33 H 1.08996 * 109.47080 * 63.95981 * 3 2 1 34 34 H 1.09001 * 109.47519 * 306.04504 * 4 2 1 35 35 H 1.09006 * 109.47071 * 186.04639 * 4 2 1 36 36 H 1.09000 * 109.47077 * 64.82291 * 5 4 2 37 37 H 1.08997 * 109.46517 * 304.82169 * 5 4 2 38 38 H 1.09004 * 109.98808 * 27.26915 * 7 6 5 39 39 H 1.09003 * 109.99404 * 265.95773 * 7 6 5 40 40 H 1.09000 * 110.37401 * 239.71472 * 8 7 6 41 41 H 1.09004 * 110.46285 * 117.43776 * 8 7 6 42 42 H 1.09003 * 109.51934 * 304.04732 * 13 11 6 43 43 H 1.08994 * 109.52112 * 64.16110 * 13 11 6 44 44 H 1.09005 * 109.47862 * 172.11075 * 14 13 11 45 45 H 1.09001 * 109.47834 * 292.14351 * 14 13 11 46 46 H 1.09006 * 109.47541 * 30.04533 * 18 17 15 47 47 H 1.08997 * 109.47627 * 150.05122 * 18 17 15 48 48 H 1.09000 * 109.47167 * 299.99836 * 19 18 17 49 49 H 1.08999 * 109.47103 * 60.00266 * 19 18 17 50 50 H 0.97004 * 119.99744 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 7 2.0564 -2.9897 2.1616 7 6 1.8104 -4.4400 1.9942 8 6 2.9383 -5.1744 2.7480 9 6 3.8370 -4.0505 3.3065 10 1 3.5471 -3.8145 4.3304 11 6 3.5236 -2.8569 2.3798 12 1 3.7849 -1.9033 2.8384 13 6 4.2225 -3.0661 1.0337 14 6 5.7369 -3.0380 1.2440 15 6 6.1080 -4.0032 2.3347 16 8 7.2503 -4.4068 2.3908 17 7 5.2303 -4.4426 3.2639 18 6 5.7003 -5.3714 4.2946 19 6 5.5241 -6.8098 3.8036 20 6 6.0082 -7.7654 4.8636 21 1 6.4017 -7.3848 5.7946 22 6 5.9477 -9.1254 4.6454 23 7 5.4680 -9.5888 3.5119 24 14 6.5471 -10.3098 5.9597 25 1 7.0356 -9.5415 7.1328 26 1 5.4286 -11.1927 6.3776 27 1 7.6530 -11.1368 5.4136 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 2.1356 -2.6438 0.0910 37 1 0.5529 -2.3392 0.8463 38 1 1.8367 -4.7027 0.9366 39 1 0.8430 -4.7056 2.4204 40 1 3.5032 -5.8068 2.0631 41 1 2.5268 -5.7711 3.5621 42 1 3.9304 -4.0304 0.6177 43 1 3.9345 -2.2708 0.3463 44 1 6.2377 -3.3245 0.3191 45 1 6.0458 -2.0320 1.5282 46 1 6.7545 -5.1840 4.4994 47 1 5.1215 -5.2254 5.2066 48 1 4.4701 -6.9973 3.5989 49 1 6.1030 -6.9559 2.8916 50 1 5.4258 -10.5456 3.3582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273107783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:02 Heat of formation + Delta-G solvation = -42.520324 kcal Electronic energy + Delta-G solvation = -27270.689820 eV Core-core repulsion = 23717.822215 eV Total energy + Delta-G solvation = -3552.867605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.12882 -39.93786 -38.25895 -36.80172 -35.22662 -34.31109 -32.96886 -31.20516 -29.21940 -28.91073 -28.37361 -26.92751 -25.01386 -24.81801 -23.49296 -22.53798 -21.90657 -21.00846 -19.15682 -18.53758 -17.91007 -17.52720 -17.14854 -16.61217 -16.50339 -16.26618 -15.92126 -15.81001 -15.29935 -15.07544 -14.89067 -14.64587 -14.45656 -14.17168 -13.87354 -13.56687 -13.42964 -13.30156 -13.13866 -13.08190 -12.88349 -12.80736 -12.54384 -12.52462 -12.44602 -12.39940 -12.06859 -12.01412 -11.81208 -11.70449 -11.65139 -11.55862 -11.32928 -10.60144 -10.57489 -9.57680 -9.39373 -9.25814 -8.22837 -6.34372 1.37333 1.38872 1.51812 1.60676 2.03407 2.40148 2.74555 3.10597 3.25691 3.41100 3.54789 3.67412 3.82330 4.03455 4.10639 4.11677 4.22381 4.24260 4.33912 4.38413 4.41940 4.44093 4.54989 4.66327 4.67238 4.71107 4.71976 4.75785 4.80887 4.82609 4.89226 4.95914 4.99027 5.05782 5.06632 5.08564 5.09522 5.15763 5.28382 5.35551 5.49666 5.62497 5.76155 5.83299 5.93406 6.13343 6.18487 6.20183 6.58345 6.81129 7.21078 7.34536 8.89263 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.003143 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.105788 B = 8906.680108 C = 9538.853002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.559 5.559 3 C 0.024 3.976 4 C 0.060 3.940 5 C 0.049 3.951 6 N -0.505 5.505 7 C 0.049 3.951 8 C -0.140 4.140 9 C 0.141 3.859 10 H 0.100 0.900 11 C 0.070 3.930 12 H 0.125 0.875 13 C -0.142 4.142 14 C -0.115 4.115 15 C 0.498 3.502 16 O -0.602 6.602 17 N -0.595 5.595 18 C 0.128 3.872 19 C 0.028 3.972 20 C -0.542 4.542 21 H 0.062 0.938 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.967 3.033 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.282 1.282 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.128 0.872 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.012 0.988 49 H -0.032 1.032 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 22.696 -6.738 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.284 5.284 3 C -0.124 4.124 4 C -0.068 4.068 5 C -0.079 4.079 6 N -0.229 5.229 7 C -0.079 4.079 8 C -0.180 4.180 9 C 0.036 3.964 10 H 0.117 0.883 11 C -0.039 4.039 12 H 0.143 0.857 13 C -0.181 4.181 14 C -0.155 4.155 15 C 0.289 3.711 16 O -0.483 6.483 17 N -0.326 5.326 18 C 0.005 3.995 19 C -0.010 4.010 20 C -0.581 4.581 21 H 0.080 0.920 22 C -0.197 4.197 23 N -0.572 5.572 24 Si 0.792 3.208 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.208 1.208 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.146 0.854 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.030 0.970 49 H -0.013 1.013 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.396 22.362 -6.802 26.457 hybrid contribution 0.650 -1.392 0.495 1.614 sum -11.747 20.970 -6.307 24.849 Atomic orbital electron populations 1.22473 0.86884 1.02629 1.00801 1.61943 1.08724 1.14654 1.43054 1.22407 1.01112 0.87957 1.00882 1.22099 1.00604 0.92482 0.91648 1.22297 1.01380 0.93339 0.90896 1.65059 1.12946 1.07718 1.37128 1.22824 0.98850 0.87201 0.99034 1.22847 0.96933 0.97932 1.00269 1.21611 0.79141 0.94309 1.01333 0.88251 1.23043 0.88445 0.98189 0.94186 0.85689 1.22232 0.93407 1.03571 0.98886 1.21546 0.98091 0.99500 0.96336 1.21670 0.84359 0.82034 0.82996 1.90688 1.22491 1.59976 1.75188 1.47641 1.10137 1.45424 1.29354 1.21442 0.99027 0.89075 0.89914 1.19209 0.95632 0.91511 0.94649 1.21599 1.41778 0.92078 1.02620 0.92026 1.25974 0.95283 1.00479 0.97966 1.70119 1.47152 1.13932 1.25960 0.85365 0.78054 0.78417 0.79000 1.18443 1.19828 1.20781 0.95530 0.90731 0.91076 0.90907 0.90638 0.95499 0.94141 0.90025 0.93255 0.89966 0.93125 0.88907 0.93644 0.91343 0.92598 0.87111 0.87984 0.85417 0.93051 0.89893 0.96985 1.01324 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.33 127.69 1.19 1.42 16 2 N -0.56 -7.38 5.02 -948.86 -4.76 -12.14 16 3 C 0.02 0.26 9.57 127.69 1.22 1.48 16 4 C 0.06 0.81 4.41 86.31 0.38 1.19 16 5 C 0.05 0.75 4.35 86.31 0.38 1.12 16 6 N -0.50 -9.44 5.34 -857.31 -4.58 -14.02 16 7 C 0.05 1.08 5.98 86.51 0.52 1.60 16 8 C -0.14 -4.22 4.54 31.48 0.14 -4.08 16 9 C 0.14 3.95 3.15 46.22 0.15 4.09 16 10 H 0.10 2.63 7.98 -2.39 -0.02 2.61 16 11 C 0.07 1.40 2.52 45.01 0.11 1.51 16 12 H 0.13 2.06 7.66 -2.39 -0.02 2.05 16 13 C -0.14 -2.85 3.87 30.60 0.12 -2.73 16 14 C -0.11 -2.76 6.07 29.70 0.18 -2.58 16 15 C 0.50 18.65 7.54 87.47 0.66 19.31 16 16 O -0.60 -29.18 16.34 -3.04 -0.05 -29.22 16 17 N -0.59 -21.78 2.50 -796.55 -1.99 -23.77 16 18 C 0.13 5.73 5.13 86.38 0.44 6.17 16 19 C 0.03 1.55 5.03 29.85 0.15 1.70 16 20 C -0.54 -32.03 9.11 25.60 0.23 -31.79 16 21 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 22 C 0.00 0.05 5.46 84.65 0.46 0.51 16 23 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 24 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 28 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.71 8.12 -2.39 -0.02 0.70 16 30 H 0.07 0.80 6.37 -2.39 -0.02 0.78 16 31 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 32 H 0.07 0.67 8.12 -2.39 -0.02 0.66 16 33 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 35 H 0.08 1.03 6.01 -2.38 -0.01 1.01 16 36 H 0.05 0.81 6.14 -2.39 -0.01 0.80 16 37 H 0.08 1.22 6.34 -2.39 -0.02 1.20 16 38 H 0.05 1.09 7.36 -2.39 -0.02 1.07 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.69 7.49 -2.39 -0.02 1.67 16 41 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 42 H 0.06 1.36 6.57 -2.39 -0.02 1.34 16 43 H 0.11 1.67 5.43 -2.39 -0.01 1.66 16 44 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.05 2.50 7.26 -2.38 -0.02 2.49 16 47 H 0.08 3.32 7.88 -2.39 -0.02 3.30 16 48 H 0.01 0.67 6.28 -2.39 -0.01 0.66 16 49 H -0.03 -2.06 8.14 -2.39 -0.02 -2.08 16 50 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.30 373.62 -1.84 -77.13 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.90 Total: 13.56 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 6.34 Total: -1.09 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -11.05 Total: -107.99 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.05 Total: -29.22 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.30 -1.84 -77.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273107783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.611 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds