Wall clock time and date at job start Fri Apr 10 2020 18:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 110.99943 * 2 1 4 4 C 1.46900 * 111.00141 * 123.95679 * 2 1 3 5 5 C 1.53005 * 109.46989 * 169.99848 * 4 2 1 6 6 N 1.46900 * 109.46989 * 180.02562 * 5 4 2 7 7 C 1.48645 * 110.99887 * 290.12791 * 6 5 4 8 8 C 1.54644 * 104.63447 * 201.48807 * 7 6 5 9 9 C 1.53254 * 104.67052 * 23.68296 * 8 7 6 10 10 C 1.53604 * 111.08651 * 120.48178 * 9 8 7 11 11 C 1.54708 * 101.51049 * 144.99163 * 10 9 8 12 12 N 1.46881 * 105.51907 * 335.48046 * 11 10 9 13 13 C 1.46500 * 124.37036 * 196.78572 * 12 11 10 14 14 C 1.52997 * 109.47473 * 89.99839 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.34751 * 111.25765 * 17.04800 * 12 11 10 24 24 O 1.21272 * 125.13544 * 178.76061 * 23 12 11 25 25 C 1.48804 * 110.99856 * 174.51069 * 6 5 4 26 26 H 1.08994 * 109.47391 * 296.04274 * 1 2 3 27 27 H 1.09001 * 109.47643 * 56.04034 * 1 2 3 28 28 H 1.09009 * 109.47485 * 176.04336 * 1 2 3 29 29 H 1.09001 * 109.46953 * 183.95704 * 3 2 1 30 30 H 1.09001 * 109.47366 * 303.95688 * 3 2 1 31 31 H 1.08996 * 109.46622 * 63.95819 * 3 2 1 32 32 H 1.09004 * 109.46679 * 50.00463 * 4 2 1 33 33 H 1.08997 * 109.46827 * 290.00035 * 4 2 1 34 34 H 1.09000 * 109.46648 * 60.00051 * 5 4 2 35 35 H 1.08999 * 109.47281 * 300.00276 * 5 4 2 36 36 H 1.09004 * 110.40676 * 82.70536 * 7 6 5 37 37 H 1.08996 * 110.41017 * 320.28040 * 7 6 5 38 38 H 1.08992 * 110.39990 * 264.88012 * 8 7 6 39 39 H 1.09002 * 110.39536 * 142.47386 * 8 7 6 40 40 H 1.09005 * 111.02209 * 26.93487 * 10 9 8 41 41 H 1.09000 * 111.01834 * 263.04469 * 10 9 8 42 42 H 1.09001 * 110.23638 * 216.46681 * 11 10 9 43 43 H 1.09000 * 110.23730 * 94.49184 * 11 10 9 44 44 H 1.09002 * 109.47129 * 329.99581 * 13 12 11 45 45 H 1.08998 * 109.46845 * 210.00388 * 13 12 11 46 46 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 47 47 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 48 48 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 49 49 H 1.08998 * 110.45750 * 39.48196 * 25 6 5 50 50 H 1.08995 * 110.45452 * 276.91488 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 7 4.0308 -1.7219 2.1074 7 6 3.9939 -0.9160 3.3558 8 6 5.0356 -1.5841 4.2832 9 6 5.9941 -2.3085 3.3318 10 6 7.4313 -1.7917 3.4961 11 6 8.2521 -3.0817 3.2601 12 7 7.3476 -4.1896 3.5942 13 6 7.7842 -5.5632 3.8571 14 6 8.0724 -5.7298 5.3505 15 6 8.5208 -7.1429 5.6209 16 1 8.5935 -7.8511 4.8089 17 6 8.8394 -7.5312 6.9050 18 7 8.7514 -6.6685 7.8937 19 14 9.3960 -9.2825 7.2401 20 1 10.6290 -9.5674 6.4629 21 1 9.6756 -9.4443 8.6896 22 1 8.3255 -10.2284 6.8344 23 6 6.0639 -3.7809 3.6222 24 8 5.1093 -4.4935 3.8498 25 6 5.4717 -2.0398 1.9151 26 1 -0.3634 0.4512 0.9232 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.5089 -1.7408 1.1754 33 1 1.7975 -0.2248 2.0627 34 1 3.9908 0.0193 0.9322 35 1 3.7024 -1.4965 0.0449 36 1 3.0021 -0.9579 3.8061 37 1 4.2754 0.1167 3.1501 38 1 4.5496 -2.2975 4.9487 39 1 5.5707 -0.8293 4.8594 40 1 7.5945 -1.4029 4.5013 41 1 7.6638 -1.0374 2.7444 42 1 9.1251 -3.0977 3.9126 43 1 8.5594 -3.1474 2.2164 44 1 8.6893 -5.7721 3.2869 45 1 6.9986 -6.2574 3.5590 46 1 7.1672 -5.5208 5.9207 47 1 8.8580 -5.0355 5.6485 48 1 8.9752 -6.9419 8.7972 49 1 5.9930 -1.1916 1.4713 50 1 5.5863 -2.9268 1.2921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273108101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:05 Heat of formation + Delta-G solvation = -20.622731 kcal Electronic energy + Delta-G solvation = -26321.528477 eV Core-core repulsion = 22769.610423 eV Total energy + Delta-G solvation = -3551.918054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88820 -38.55203 -37.22829 -35.88942 -34.04800 -32.72399 -30.97372 -29.10885 -28.85825 -27.94444 -27.59187 -25.07388 -24.42436 -23.01178 -21.96480 -21.81842 -20.76652 -20.03219 -18.52301 -16.66503 -16.46439 -15.97705 -15.90399 -15.51435 -15.48812 -15.01764 -14.63483 -14.46912 -14.35135 -14.13700 -13.69693 -13.41517 -12.84515 -12.80159 -12.69812 -12.61935 -12.49381 -12.32936 -12.11948 -12.05089 -11.93348 -11.62446 -11.42865 -11.37675 -11.22594 -11.03036 -10.90831 -10.77327 -10.68906 -10.62954 -9.95362 -9.84373 -9.29996 -9.02488 -8.74853 -8.54185 -8.35431 -7.95163 -6.00737 -4.04091 3.07547 3.34184 3.38263 3.39713 3.41062 3.61501 4.02802 4.38767 4.43791 4.47114 4.53266 4.73356 4.79348 4.82843 4.93375 5.02804 5.06201 5.12182 5.19922 5.26056 5.28014 5.30912 5.35278 5.40589 5.50732 5.53855 5.55282 5.62733 5.67325 5.73858 5.76843 5.77211 5.82091 5.96126 6.03150 6.10905 6.20609 6.51103 6.61893 6.64162 6.71376 6.84574 6.91595 7.07582 7.55166 7.69647 7.89506 7.99587 8.35991 8.78017 9.02639 9.59739 11.10650 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.002482 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.492041 B =11279.167304 C =11567.229276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.021 3.979 4 C 0.060 3.940 5 C 0.050 3.950 6 N -0.505 5.505 7 C 0.037 3.963 8 C -0.104 4.104 9 C -0.101 4.101 10 C -0.123 4.123 11 C 0.102 3.898 12 N -0.615 5.615 13 C 0.128 3.872 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.529 3.471 24 O -0.517 6.517 25 C 0.064 3.936 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.016 0.984 48 H 0.261 0.739 49 H 0.054 0.946 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 19.419 -14.930 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.079 4.079 6 N -0.229 5.229 7 C -0.091 4.091 8 C -0.143 4.143 9 C -0.105 4.105 10 C -0.161 4.161 11 C -0.022 4.022 12 N -0.348 5.348 13 C 0.008 3.992 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 C 0.315 3.685 24 O -0.393 6.393 25 C -0.064 4.064 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.607 18.243 -15.007 25.501 hybrid contribution 0.665 0.246 0.983 1.212 sum -8.942 18.488 -14.024 24.869 Atomic orbital electron populations 1.22366 0.86988 1.02509 1.00377 1.61899 1.08080 1.13774 1.43518 1.22449 1.01012 0.88921 1.00383 1.22067 0.95217 0.98786 0.90781 1.22233 0.94578 0.96244 0.94846 1.65353 1.16129 1.39099 1.02285 1.23180 1.00145 0.94683 0.91118 1.22214 0.95573 0.99352 0.97134 1.21405 0.96489 0.95627 0.96961 1.22714 0.92699 0.97180 1.03485 1.22047 0.94027 0.85623 1.00497 1.48643 1.06715 1.10647 1.68828 1.21778 0.98832 0.78265 1.00293 1.19393 0.97207 0.96958 0.88959 1.21059 1.45296 0.96216 0.93526 0.92529 1.25005 0.95577 0.97492 0.96239 1.69964 1.48618 1.34562 1.00064 0.86608 0.79168 0.84856 0.77073 1.20199 1.21283 1.20126 1.20038 0.83012 0.88787 0.76666 1.90699 1.39197 1.60551 1.48807 1.22825 0.87940 1.00910 0.94717 0.95674 0.91386 0.91115 0.91230 0.91450 0.95713 0.89658 0.94729 0.94677 0.89890 0.90060 0.93966 0.89668 0.90485 0.89590 0.89631 0.90129 0.91707 0.91741 0.91154 0.96147 0.96527 0.92902 0.92792 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.57 60.06 0.57 0.76 16 2 N -0.55 -4.77 5.02 -251.26 -1.26 -6.03 16 3 C 0.02 0.15 9.32 60.07 0.56 0.71 16 4 C 0.06 0.57 5.01 -3.82 -0.02 0.55 16 5 C 0.05 0.49 4.73 -3.82 -0.02 0.47 16 6 N -0.50 -6.11 5.37 -230.16 -1.24 -7.35 16 7 C 0.04 0.40 5.76 -1.99 -0.01 0.39 16 8 C -0.10 -1.33 6.28 -25.74 -0.16 -1.49 16 9 C -0.10 -1.37 0.83 -155.24 -0.13 -1.50 16 10 C -0.12 -1.35 6.20 -25.52 -0.16 -1.51 16 11 C 0.10 1.36 7.36 -2.94 -0.02 1.34 16 12 N -0.61 -11.34 2.94 -172.52 -0.51 -11.85 16 13 C 0.13 2.77 5.89 -4.04 -0.02 2.75 16 14 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 15 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 19 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.53 10.07 6.60 -11.22 -0.07 10.00 16 24 O -0.52 -12.15 17.17 5.56 0.10 -12.06 16 25 C 0.06 0.77 5.66 -2.57 -0.01 0.75 16 26 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.07 0.50 8.12 -51.92 -0.42 0.08 16 29 H 0.07 0.48 6.47 -51.93 -0.34 0.14 16 30 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.03 0.33 7.25 -51.93 -0.38 -0.05 16 34 H 0.04 0.31 6.29 -51.93 -0.33 -0.01 16 35 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 37 H 0.04 0.39 7.81 -51.93 -0.41 -0.02 16 38 H 0.08 1.33 7.48 -51.93 -0.39 0.94 16 39 H 0.08 0.81 7.43 -51.93 -0.39 0.43 16 40 H 0.09 0.93 7.60 -51.93 -0.39 0.53 16 41 H 0.09 0.69 7.46 -51.93 -0.39 0.30 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.07 1.61 7.93 -51.93 -0.41 1.20 16 46 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.05 0.51 7.32 -51.93 -0.38 0.13 16 50 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -34.07 390.00 -10.58 -44.66 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -9.21 Total: -3.37 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.06 Total: -0.26 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -2.27 Total: -51.73 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.10 Total: -12.06 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.07 -10.58 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273108101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.034 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds