Wall clock time and date at job start Fri Apr 10 2020 18:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 110.99943 * 2 1 4 4 C 1.46900 * 111.00141 * 123.95679 * 2 1 3 5 5 C 1.53005 * 109.46989 * 169.99848 * 4 2 1 6 6 N 1.46900 * 109.46989 * 180.02562 * 5 4 2 7 7 C 1.48645 * 110.99887 * 290.12791 * 6 5 4 8 8 C 1.54644 * 104.63447 * 201.48807 * 7 6 5 9 9 C 1.53254 * 104.67052 * 23.68296 * 8 7 6 10 10 C 1.53604 * 111.08651 * 120.48178 * 9 8 7 11 11 C 1.54708 * 101.51049 * 144.99163 * 10 9 8 12 12 N 1.46881 * 105.51907 * 335.48046 * 11 10 9 13 13 C 1.46500 * 124.37036 * 196.78572 * 12 11 10 14 14 C 1.52997 * 109.47473 * 89.99839 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.34751 * 111.25765 * 17.04800 * 12 11 10 24 24 O 1.21272 * 125.13544 * 178.76061 * 23 12 11 25 25 C 1.48804 * 110.99856 * 174.51069 * 6 5 4 26 26 H 1.08994 * 109.47391 * 296.04274 * 1 2 3 27 27 H 1.09001 * 109.47643 * 56.04034 * 1 2 3 28 28 H 1.09009 * 109.47485 * 176.04336 * 1 2 3 29 29 H 1.09001 * 109.46953 * 183.95704 * 3 2 1 30 30 H 1.09001 * 109.47366 * 303.95688 * 3 2 1 31 31 H 1.08996 * 109.46622 * 63.95819 * 3 2 1 32 32 H 1.09004 * 109.46679 * 50.00463 * 4 2 1 33 33 H 1.08997 * 109.46827 * 290.00035 * 4 2 1 34 34 H 1.09000 * 109.46648 * 60.00051 * 5 4 2 35 35 H 1.08999 * 109.47281 * 300.00276 * 5 4 2 36 36 H 1.09004 * 110.40676 * 82.70536 * 7 6 5 37 37 H 1.08996 * 110.41017 * 320.28040 * 7 6 5 38 38 H 1.08992 * 110.39990 * 264.88012 * 8 7 6 39 39 H 1.09002 * 110.39536 * 142.47386 * 8 7 6 40 40 H 1.09005 * 111.02209 * 26.93487 * 10 9 8 41 41 H 1.09000 * 111.01834 * 263.04469 * 10 9 8 42 42 H 1.09001 * 110.23638 * 216.46681 * 11 10 9 43 43 H 1.09000 * 110.23730 * 94.49184 * 11 10 9 44 44 H 1.09002 * 109.47129 * 329.99581 * 13 12 11 45 45 H 1.08998 * 109.46845 * 210.00388 * 13 12 11 46 46 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 47 47 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 48 48 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 49 49 H 1.08998 * 110.45750 * 39.48196 * 25 6 5 50 50 H 1.08995 * 110.45452 * 276.91488 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 7 4.0308 -1.7219 2.1074 7 6 3.9939 -0.9160 3.3558 8 6 5.0356 -1.5841 4.2832 9 6 5.9941 -2.3085 3.3318 10 6 7.4313 -1.7917 3.4961 11 6 8.2521 -3.0817 3.2601 12 7 7.3476 -4.1896 3.5942 13 6 7.7842 -5.5632 3.8571 14 6 8.0724 -5.7298 5.3505 15 6 8.5208 -7.1429 5.6209 16 1 8.5935 -7.8511 4.8089 17 6 8.8394 -7.5312 6.9050 18 7 8.7514 -6.6685 7.8937 19 14 9.3960 -9.2825 7.2401 20 1 10.6290 -9.5674 6.4629 21 1 9.6756 -9.4443 8.6896 22 1 8.3255 -10.2284 6.8344 23 6 6.0639 -3.7809 3.6222 24 8 5.1093 -4.4935 3.8498 25 6 5.4717 -2.0398 1.9151 26 1 -0.3634 0.4512 0.9232 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.5089 -1.7408 1.1754 33 1 1.7975 -0.2248 2.0627 34 1 3.9908 0.0193 0.9322 35 1 3.7024 -1.4965 0.0449 36 1 3.0021 -0.9579 3.8061 37 1 4.2754 0.1167 3.1501 38 1 4.5496 -2.2975 4.9487 39 1 5.5707 -0.8293 4.8594 40 1 7.5945 -1.4029 4.5013 41 1 7.6638 -1.0374 2.7444 42 1 9.1251 -3.0977 3.9126 43 1 8.5594 -3.1474 2.2164 44 1 8.6893 -5.7721 3.2869 45 1 6.9986 -6.2574 3.5590 46 1 7.1672 -5.5208 5.9207 47 1 8.8580 -5.0355 5.6485 48 1 8.9752 -6.9419 8.7972 49 1 5.9930 -1.1916 1.4713 50 1 5.5863 -2.9268 1.2921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273108101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:04 Heat of formation + Delta-G solvation = -45.889547 kcal Electronic energy + Delta-G solvation = -26322.624128 eV Core-core repulsion = 22769.610423 eV Total energy + Delta-G solvation = -3553.013706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.09311 -39.51500 -38.09352 -37.40587 -35.76278 -34.32648 -32.37946 -30.43606 -29.91704 -28.67362 -28.45495 -26.95915 -25.32100 -24.09568 -23.50565 -22.72874 -21.86596 -21.17644 -19.86835 -18.67898 -17.54695 -17.13334 -16.91467 -16.74567 -16.55584 -16.26314 -16.03702 -15.50652 -15.35572 -15.09853 -14.85410 -14.60683 -14.48522 -14.29549 -13.79184 -13.69335 -13.53815 -13.46963 -13.21075 -13.07860 -12.85795 -12.67851 -12.63303 -12.59596 -12.52950 -12.34054 -12.13326 -11.98361 -11.93149 -11.79931 -11.67808 -11.58308 -11.43433 -10.63065 -10.55585 -9.52947 -9.44379 -9.27981 -8.24772 -6.37784 1.37923 1.42538 1.49918 1.62678 2.17600 2.41164 2.68530 3.08375 3.21657 3.32312 3.46432 3.60685 3.90267 4.01774 4.06015 4.13391 4.20103 4.27264 4.30567 4.38666 4.46836 4.50919 4.54521 4.57601 4.63587 4.67206 4.69430 4.72147 4.76204 4.82648 4.86888 4.94243 4.95055 4.98563 5.00504 5.02360 5.07483 5.11288 5.20539 5.32617 5.45631 5.59971 5.79985 5.85414 5.96867 6.07873 6.14746 6.15839 6.34017 6.77251 7.28344 7.32297 8.87199 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.002482 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.492041 B =11279.167304 C =11567.229276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.021 3.979 4 C 0.065 3.935 5 C 0.058 3.942 6 N -0.535 5.535 7 C 0.045 3.955 8 C -0.107 4.107 9 C -0.094 4.094 10 C -0.108 4.108 11 C 0.092 3.908 12 N -0.623 5.623 13 C 0.142 3.858 14 C 0.026 3.974 15 C -0.547 4.547 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.971 3.029 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.512 3.488 24 O -0.579 6.579 25 C 0.071 3.929 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.048 0.952 46 H -0.030 1.030 47 H 0.002 0.998 48 H 0.265 0.735 49 H 0.094 0.906 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 21.389 -16.712 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.285 5.285 3 C -0.127 4.127 4 C -0.063 4.063 5 C -0.070 4.070 6 N -0.260 5.260 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.098 4.098 10 C -0.146 4.146 11 C -0.030 4.030 12 N -0.355 5.355 13 C 0.020 3.980 14 C -0.012 4.012 15 C -0.585 4.585 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.196 1.196 23 C 0.301 3.699 24 O -0.459 6.459 25 C -0.057 4.057 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.152 0.848 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.067 0.933 46 H -0.011 1.011 47 H 0.020 0.980 48 H 0.073 0.927 49 H 0.112 0.888 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.155 20.255 -16.820 27.563 hybrid contribution 0.178 -0.365 1.553 1.605 sum -7.977 19.890 -15.267 26.312 Atomic orbital electron populations 1.22400 0.86384 1.02512 1.01014 1.61915 1.08805 1.14795 1.42959 1.22496 1.01317 0.87963 1.00950 1.21945 0.95149 0.98008 0.91235 1.22165 0.94557 0.96685 0.93624 1.65288 1.16645 1.40623 1.03414 1.23124 0.99266 0.95730 0.90094 1.22245 0.96103 0.99071 0.97073 1.21407 0.98751 0.91210 0.98436 1.22808 0.89599 0.96754 1.05404 1.22446 0.93322 0.84903 1.02296 1.48784 1.07898 1.10621 1.68242 1.21328 0.99153 0.80476 0.97019 1.19191 0.94122 0.96143 0.91766 1.21522 1.45413 0.97286 0.94259 0.91587 1.26041 0.95417 1.02488 0.95936 1.70109 1.49452 1.37037 1.00594 0.85411 0.79233 0.78637 0.77225 1.18289 1.20731 1.19609 1.21154 0.82302 0.91229 0.75261 1.90645 1.41121 1.62727 1.51390 1.22807 0.88221 1.01633 0.93066 0.95552 0.90074 0.91622 0.90727 0.90413 0.95534 0.91686 0.94790 0.92682 0.90564 0.90704 0.90893 0.93884 0.87799 0.89266 0.84833 0.90350 0.88463 0.89108 0.93342 1.01150 0.97959 0.92663 0.88811 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.57 127.69 1.22 1.56 16 2 N -0.56 -8.91 5.02 -948.83 -4.76 -13.67 16 3 C 0.02 0.24 9.32 127.69 1.19 1.43 16 4 C 0.06 1.18 5.01 86.30 0.43 1.61 16 5 C 0.06 1.03 4.73 86.30 0.41 1.44 16 6 N -0.53 -12.29 5.37 -882.09 -4.74 -17.03 16 7 C 0.05 0.91 5.76 86.53 0.50 1.41 16 8 C -0.11 -2.64 6.28 31.24 0.20 -2.45 16 9 C -0.09 -2.44 0.83 -52.66 -0.04 -2.48 16 10 C -0.11 -2.00 6.20 31.38 0.19 -1.81 16 11 C 0.09 2.26 7.36 86.89 0.64 2.90 16 12 N -0.62 -23.34 2.94 -818.15 -2.41 -25.75 16 13 C 0.14 6.34 5.89 86.38 0.51 6.85 16 14 C 0.03 1.44 5.30 29.85 0.16 1.60 16 15 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 17 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 18 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 19 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 C 0.51 20.23 6.60 87.52 0.58 20.81 16 24 O -0.58 -29.30 17.17 -3.01 -0.05 -29.35 16 25 C 0.07 1.52 5.66 86.06 0.49 2.01 16 26 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 28 H 0.06 0.93 8.12 -2.38 -0.02 0.91 16 29 H 0.07 0.79 6.47 -2.39 -0.02 0.77 16 30 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 31 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 1.42 8.06 -2.39 -0.02 1.40 16 33 H 0.03 0.61 7.25 -2.39 -0.02 0.59 16 34 H 0.06 0.77 6.29 -2.39 -0.02 0.75 16 35 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 36 H 0.07 1.59 7.79 -2.39 -0.02 1.57 16 37 H 0.07 1.04 7.81 -2.39 -0.02 1.03 16 38 H 0.04 1.43 7.48 -2.39 -0.02 1.41 16 39 H 0.10 1.96 7.43 -2.39 -0.02 1.95 16 40 H 0.09 1.64 7.60 -2.38 -0.02 1.62 16 41 H 0.13 1.29 7.46 -2.39 -0.02 1.27 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.05 2.34 7.93 -2.39 -0.02 2.33 16 46 H -0.03 -1.95 8.14 -2.39 -0.02 -1.97 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 49 H 0.09 1.29 7.32 -2.39 -0.02 1.27 16 50 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 Total: -1.00 -80.00 390.00 -1.60 -81.60 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.88 Total: 11.65 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 7.16 Total: 3.42 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -11.62 Total: -114.56 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.05 Total: -29.35 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.00 -1.60 -81.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273108101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.715 kcal (2) G-P(sol) polarization free energy of solvation -80.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds