Wall clock time and date at job start Fri Apr 10 2020 18:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00296 * 2 1 4 4 C 1.46901 * 110.99667 * 123.95643 * 2 1 3 5 5 C 1.53002 * 109.47005 * 170.00170 * 4 2 1 6 6 N 1.46901 * 109.47005 * 180.02562 * 5 4 2 7 7 C 1.48727 * 111.00221 * 52.83879 * 6 5 4 8 8 C 1.55001 * 103.35252 * 158.81283 * 7 6 5 9 9 C 1.54795 * 102.94429 * 323.04446 * 8 7 6 10 10 C 1.47082 * 111.00068 * 169.99840 * 6 5 4 11 11 C 1.53858 * 110.70515 * 93.72884 * 10 6 5 12 12 C 1.54644 * 101.58789 * 263.77528 * 11 10 6 13 13 N 1.46846 * 105.50456 * 335.25398 * 12 11 10 14 14 C 1.46499 * 124.36829 * 196.84474 * 13 12 11 15 15 C 1.53004 * 109.47198 * 90.02612 * 14 13 12 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.34666 * 111.26382 * 17.10843 * 13 12 11 25 25 O 1.21282 * 125.08256 * 178.89712 * 24 13 12 26 26 H 1.09000 * 109.47391 * 296.04971 * 1 2 3 27 27 H 1.09005 * 109.46569 * 56.04535 * 1 2 3 28 28 H 1.08994 * 109.47479 * 176.04132 * 1 2 3 29 29 H 1.08996 * 109.47350 * 183.95270 * 3 2 1 30 30 H 1.09006 * 109.47422 * 303.95678 * 3 2 1 31 31 H 1.09000 * 109.47018 * 63.94863 * 3 2 1 32 32 H 1.08997 * 109.47275 * 49.99829 * 4 2 1 33 33 H 1.09006 * 109.46965 * 290.00082 * 4 2 1 34 34 H 1.08997 * 109.47382 * 59.99724 * 5 4 2 35 35 H 1.09004 * 109.46606 * 299.99292 * 5 4 2 36 36 H 1.09002 * 110.64292 * 40.34881 * 7 6 5 37 37 H 1.08999 * 110.64356 * 277.28164 * 7 6 5 38 38 H 1.09000 * 110.71935 * 204.67687 * 8 7 6 39 39 H 1.09001 * 110.71701 * 81.41274 * 8 7 6 40 40 H 1.09003 * 110.36952 * 263.06577 * 9 8 7 41 41 H 1.08999 * 110.46320 * 140.78197 * 9 8 7 42 42 H 1.09001 * 111.00565 * 145.69625 * 11 10 6 43 43 H 1.09007 * 111.03796 * 21.86720 * 11 10 6 44 44 H 1.08999 * 110.24346 * 216.24298 * 12 11 10 45 45 H 1.09009 * 110.31078 * 94.29510 * 12 11 10 46 46 H 1.09000 * 109.47602 * 330.02162 * 14 13 12 47 47 H 1.09007 * 109.47337 * 210.01877 * 14 13 12 48 48 H 1.09000 * 109.47211 * 59.99311 * 15 14 13 49 49 H 1.09007 * 109.46376 * 299.99853 * 15 14 13 50 50 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 7 4.0307 -1.7220 2.1077 7 6 3.2711 -2.9869 2.2951 8 6 4.2496 -3.8754 3.1048 9 6 5.6287 -3.5073 2.5059 10 6 5.4242 -2.1281 1.8699 11 6 6.4000 -1.1033 2.4738 12 6 6.7252 -0.2225 1.2450 13 7 6.4863 -1.0773 0.0751 14 6 6.9898 -0.7956 -1.2715 15 6 8.3675 -1.4379 -1.4456 16 6 8.8857 -1.1476 -2.8307 17 1 8.2915 -0.5638 -3.5181 18 6 10.1154 -1.6326 -3.2222 19 7 10.5653 -1.3840 -4.4329 20 14 11.1428 -2.6429 -2.0334 21 1 10.8048 -4.0809 -2.1854 22 1 12.5840 -2.4393 -2.3280 23 1 10.8563 -2.2116 -0.6416 24 6 5.7399 -2.1505 0.3986 25 8 5.3785 -3.0082 -0.3790 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0251 -0.0709 29 1 3.0828 1.3431 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5089 -1.7407 1.1756 33 1 1.7974 -0.2248 2.0628 34 1 3.9909 0.0192 0.9324 35 1 3.7023 -1.4967 0.0452 36 1 3.0434 -3.4446 1.3324 37 1 2.3576 -2.8062 2.8616 38 1 4.0307 -4.9317 2.9484 39 1 4.2103 -3.6252 4.1650 40 1 5.9199 -4.2350 1.7483 41 1 6.3833 -3.4551 3.2907 42 1 7.2973 -1.5936 2.8515 43 1 5.9180 -0.5184 3.2572 44 1 7.7676 0.0948 1.2737 45 1 6.0676 0.6465 1.2177 46 1 7.0712 0.2824 -1.4110 47 1 6.3014 -1.2065 -2.0101 48 1 8.2861 -2.5159 -1.3062 49 1 9.0558 -1.0269 -0.7070 50 1 11.4306 -1.7248 -4.7083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273108683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:12 Heat of formation + Delta-G solvation = -13.201305 kcal Electronic energy + Delta-G solvation = -27615.992477 eV Core-core repulsion = 24064.396240 eV Total energy + Delta-G solvation = -3551.596237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35220 -38.12925 -37.18230 -36.10472 -33.65785 -32.88028 -31.89469 -29.53419 -28.41709 -27.90060 -27.66124 -25.27191 -24.40356 -23.13262 -21.95876 -21.58760 -20.40052 -20.27098 -18.52901 -17.01988 -16.83966 -16.02997 -15.90586 -15.54698 -15.35119 -15.06111 -14.79997 -14.62693 -14.17285 -13.95114 -13.62514 -13.36305 -13.01457 -12.91608 -12.77007 -12.60188 -12.56764 -12.28548 -12.09973 -11.97229 -11.87803 -11.73753 -11.56008 -11.30769 -11.21388 -11.10828 -10.98880 -10.70135 -10.65928 -10.42291 -10.15538 -9.83640 -9.72222 -9.27701 -8.57064 -8.55910 -8.41707 -8.16931 -6.06834 -4.05835 2.78083 3.30821 3.37405 3.40590 3.41770 3.53045 4.06201 4.31012 4.40360 4.43741 4.58222 4.71796 4.88701 4.92548 4.99654 5.02483 5.09499 5.13994 5.21830 5.27412 5.32787 5.38061 5.40857 5.45870 5.60156 5.62369 5.63297 5.68560 5.73228 5.76141 5.79754 5.85293 5.88969 5.91705 6.00581 6.02779 6.08785 6.31806 6.59315 6.62609 6.70824 6.81297 6.82133 6.93001 7.17164 7.31357 7.60965 7.74364 8.46282 8.53660 8.96215 9.55055 11.06279 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004124 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.819085 B = 6788.656919 C = 7898.874037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.061 3.939 5 C 0.034 3.966 6 N -0.484 5.484 7 C 0.029 3.971 8 C -0.118 4.118 9 C -0.113 4.113 10 C 0.061 3.939 11 C -0.116 4.116 12 C 0.098 3.902 13 N -0.611 5.611 14 C 0.136 3.864 15 C -0.023 4.023 16 C -0.521 4.521 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.901 5.901 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.504 3.496 25 O -0.527 6.527 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.015 0.985 49 H 0.017 0.983 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.063 2.463 18.855 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.067 4.067 5 C -0.094 4.094 6 N -0.209 5.209 7 C -0.098 4.098 8 C -0.157 4.157 9 C -0.151 4.151 10 C -0.033 4.033 11 C -0.154 4.154 12 C -0.026 4.026 13 N -0.344 5.344 14 C 0.016 3.984 15 C -0.061 4.061 16 C -0.559 4.559 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.192 1.192 24 C 0.289 3.711 25 O -0.404 6.404 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.033 0.967 49 H 0.035 0.965 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.955 2.140 18.234 24.991 hybrid contribution 0.532 -0.479 0.371 0.806 sum -16.424 1.661 18.604 24.872 Atomic orbital electron populations 1.22359 0.87085 1.02265 1.00405 1.61867 1.07900 1.14211 1.43209 1.22444 1.01312 0.88478 1.00360 1.22096 0.94793 0.98414 0.91429 1.22485 0.94616 0.99347 0.92982 1.64937 1.00035 1.17892 1.38064 1.23368 0.97269 0.89444 0.99735 1.22490 0.94006 0.99422 0.99734 1.22312 0.98323 0.94196 1.00307 1.22108 0.91033 0.96912 0.93233 1.22638 0.98333 0.97008 0.97418 1.22140 1.02092 0.93632 0.84696 1.48681 1.51474 1.23805 1.10413 1.21585 0.97230 1.00310 0.79250 1.19878 0.92103 0.96140 0.97979 1.20959 1.03441 1.34513 0.97028 0.90801 1.24970 0.97516 0.95659 0.94999 1.69908 1.19893 1.46066 1.18058 0.86769 0.79334 0.81069 0.82054 1.20232 1.21299 1.19162 1.20904 0.78150 0.81606 0.90478 1.90715 1.54680 1.38624 1.56333 0.95758 0.91241 0.91406 0.91011 0.91313 0.95615 0.90735 0.94050 0.90276 0.92078 0.92660 0.89877 0.90823 0.90674 0.90304 0.90175 0.89688 0.88374 0.90090 0.91510 0.90995 0.90620 0.96695 0.96490 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.57 60.07 0.57 0.81 16 2 N -0.55 -6.15 5.02 -251.26 -1.26 -7.42 16 3 C 0.02 0.22 9.32 60.06 0.56 0.78 16 4 C 0.06 0.67 4.63 -3.82 -0.02 0.65 16 5 C 0.03 0.44 4.15 -3.82 -0.02 0.42 16 6 N -0.48 -5.81 5.02 -216.77 -1.09 -6.90 16 7 C 0.03 0.32 5.11 -1.75 -0.01 0.31 16 8 C -0.12 -1.16 7.07 -24.73 -0.17 -1.34 16 9 C -0.11 -1.36 6.19 -25.66 -0.16 -1.52 16 10 C 0.06 0.81 0.80 -132.18 -0.11 0.71 16 11 C -0.12 -1.29 6.33 -25.42 -0.16 -1.45 16 12 C 0.10 1.27 6.84 -2.99 -0.02 1.25 16 13 N -0.61 -10.67 2.93 -172.50 -0.51 -11.18 16 14 C 0.14 2.82 5.89 -4.04 -0.02 2.80 16 15 C -0.02 -0.56 4.37 -27.88 -0.12 -0.68 16 16 C -0.52 -15.05 9.66 -34.44 -0.33 -15.39 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 20 Si 0.88 22.26 27.46 -169.99 -4.67 17.59 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.46 6.55 56.52 0.37 -6.09 16 24 C 0.50 9.06 4.45 -11.13 -0.05 9.01 16 25 O -0.53 -11.64 16.55 5.56 0.09 -11.54 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.07 0.77 6.47 -51.93 -0.34 0.43 16 30 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 31 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.80 6.73 -51.93 -0.35 0.45 16 33 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.08 1.02 5.49 -51.93 -0.29 0.74 16 35 H 0.06 1.03 5.88 -51.93 -0.31 0.73 16 36 H 0.06 0.72 7.98 -51.93 -0.41 0.30 16 37 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.13 7.46 -51.93 -0.39 0.75 16 41 H 0.08 0.81 7.40 -51.93 -0.38 0.43 16 42 H 0.08 0.88 7.57 -51.93 -0.39 0.49 16 43 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.76 7.46 -51.92 -0.39 0.37 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.08 1.70 7.92 -51.93 -0.41 1.29 16 48 H 0.01 0.39 7.56 -51.93 -0.39 0.00 16 49 H 0.02 0.41 7.21 -51.93 -0.37 0.03 16 50 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -33.81 380.10 -10.13 -43.94 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -9.05 Total: -1.31 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.15 Total: -1.66 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -2.08 Total: -52.75 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.81 -10.13 -43.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273108683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.738 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds