Wall clock time and date at job start Fri Apr 10 2020 18:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00296 * 2 1 4 4 C 1.46901 * 110.99667 * 123.95643 * 2 1 3 5 5 C 1.53002 * 109.47005 * 170.00170 * 4 2 1 6 6 N 1.46901 * 109.47005 * 180.02562 * 5 4 2 7 7 C 1.48727 * 111.00221 * 52.83879 * 6 5 4 8 8 C 1.55001 * 103.35252 * 158.81283 * 7 6 5 9 9 C 1.54795 * 102.94429 * 323.04446 * 8 7 6 10 10 C 1.47082 * 111.00068 * 169.99840 * 6 5 4 11 11 C 1.53858 * 110.70515 * 93.72884 * 10 6 5 12 12 C 1.54644 * 101.58789 * 263.77528 * 11 10 6 13 13 N 1.46846 * 105.50456 * 335.25398 * 12 11 10 14 14 C 1.46499 * 124.36829 * 196.84474 * 13 12 11 15 15 C 1.53004 * 109.47198 * 90.02612 * 14 13 12 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.34666 * 111.26382 * 17.10843 * 13 12 11 25 25 O 1.21282 * 125.08256 * 178.89712 * 24 13 12 26 26 H 1.09000 * 109.47391 * 296.04971 * 1 2 3 27 27 H 1.09005 * 109.46569 * 56.04535 * 1 2 3 28 28 H 1.08994 * 109.47479 * 176.04132 * 1 2 3 29 29 H 1.08996 * 109.47350 * 183.95270 * 3 2 1 30 30 H 1.09006 * 109.47422 * 303.95678 * 3 2 1 31 31 H 1.09000 * 109.47018 * 63.94863 * 3 2 1 32 32 H 1.08997 * 109.47275 * 49.99829 * 4 2 1 33 33 H 1.09006 * 109.46965 * 290.00082 * 4 2 1 34 34 H 1.08997 * 109.47382 * 59.99724 * 5 4 2 35 35 H 1.09004 * 109.46606 * 299.99292 * 5 4 2 36 36 H 1.09002 * 110.64292 * 40.34881 * 7 6 5 37 37 H 1.08999 * 110.64356 * 277.28164 * 7 6 5 38 38 H 1.09000 * 110.71935 * 204.67687 * 8 7 6 39 39 H 1.09001 * 110.71701 * 81.41274 * 8 7 6 40 40 H 1.09003 * 110.36952 * 263.06577 * 9 8 7 41 41 H 1.08999 * 110.46320 * 140.78197 * 9 8 7 42 42 H 1.09001 * 111.00565 * 145.69625 * 11 10 6 43 43 H 1.09007 * 111.03796 * 21.86720 * 11 10 6 44 44 H 1.08999 * 110.24346 * 216.24298 * 12 11 10 45 45 H 1.09009 * 110.31078 * 94.29510 * 12 11 10 46 46 H 1.09000 * 109.47602 * 330.02162 * 14 13 12 47 47 H 1.09007 * 109.47337 * 210.01877 * 14 13 12 48 48 H 1.09000 * 109.47211 * 59.99311 * 15 14 13 49 49 H 1.09007 * 109.46376 * 299.99853 * 15 14 13 50 50 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 7 4.0307 -1.7220 2.1077 7 6 3.2711 -2.9869 2.2951 8 6 4.2496 -3.8754 3.1048 9 6 5.6287 -3.5073 2.5059 10 6 5.4242 -2.1281 1.8699 11 6 6.4000 -1.1033 2.4738 12 6 6.7252 -0.2225 1.2450 13 7 6.4863 -1.0773 0.0751 14 6 6.9898 -0.7956 -1.2715 15 6 8.3675 -1.4379 -1.4456 16 6 8.8857 -1.1476 -2.8307 17 1 8.2915 -0.5638 -3.5181 18 6 10.1154 -1.6326 -3.2222 19 7 10.5653 -1.3840 -4.4329 20 14 11.1428 -2.6429 -2.0334 21 1 10.8048 -4.0809 -2.1854 22 1 12.5840 -2.4393 -2.3280 23 1 10.8563 -2.2116 -0.6416 24 6 5.7399 -2.1505 0.3986 25 8 5.3785 -3.0082 -0.3790 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0251 -0.0709 29 1 3.0828 1.3431 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5089 -1.7407 1.1756 33 1 1.7974 -0.2248 2.0628 34 1 3.9909 0.0192 0.9324 35 1 3.7023 -1.4967 0.0452 36 1 3.0434 -3.4446 1.3324 37 1 2.3576 -2.8062 2.8616 38 1 4.0307 -4.9317 2.9484 39 1 4.2103 -3.6252 4.1650 40 1 5.9199 -4.2350 1.7483 41 1 6.3833 -3.4551 3.2907 42 1 7.2973 -1.5936 2.8515 43 1 5.9180 -0.5184 3.2572 44 1 7.7676 0.0948 1.2737 45 1 6.0676 0.6465 1.2177 46 1 7.0712 0.2824 -1.4110 47 1 6.3014 -1.2065 -2.0101 48 1 8.2861 -2.5159 -1.3062 49 1 9.0558 -1.0269 -0.7070 50 1 11.4306 -1.7248 -4.7083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273108683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:11 Heat of formation + Delta-G solvation = -38.685130 kcal Electronic energy + Delta-G solvation = -27617.097539 eV Core-core repulsion = 24064.396240 eV Total energy + Delta-G solvation = -3552.701299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51440 -39.19601 -38.14993 -37.55065 -35.55860 -33.95061 -33.53972 -31.13425 -29.30029 -28.89212 -28.48571 -27.09087 -25.37016 -24.16986 -23.25281 -22.81465 -21.79152 -21.25436 -19.82990 -19.10238 -17.95968 -17.32312 -16.99815 -16.61499 -16.48016 -16.25904 -16.00587 -15.80526 -15.48374 -15.18106 -14.88778 -14.77112 -14.54660 -14.40585 -14.00998 -13.72242 -13.54826 -13.41184 -13.25113 -12.99481 -12.92824 -12.86672 -12.64977 -12.58786 -12.37907 -12.21846 -12.09788 -12.04877 -11.97438 -11.80910 -11.61522 -11.58686 -11.51544 -11.02176 -10.84357 -9.68565 -9.53100 -9.34451 -8.36433 -6.41905 1.29371 1.31407 1.42425 1.44358 2.05598 2.29525 2.60377 2.98329 3.17002 3.26468 3.43336 3.64724 3.78213 3.98289 4.04294 4.07782 4.17260 4.22706 4.27096 4.27638 4.41295 4.47078 4.47639 4.55449 4.59934 4.62159 4.66929 4.71000 4.73383 4.81258 4.84796 4.86805 4.95957 4.96687 5.00451 5.04410 5.07870 5.11848 5.16704 5.24403 5.26302 5.44905 5.65850 5.73437 5.74247 6.04926 6.06092 6.16429 6.20720 6.64032 7.11994 7.23296 8.79980 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004124 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.819085 B = 6788.656919 C = 7898.874037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.576 5.576 3 C 0.025 3.975 4 C 0.070 3.930 5 C 0.043 3.957 6 N -0.468 5.468 7 C 0.025 3.975 8 C -0.110 4.110 9 C -0.117 4.117 10 C 0.062 3.938 11 C -0.103 4.103 12 C 0.089 3.911 13 N -0.616 5.616 14 C 0.148 3.852 15 C -0.010 4.010 16 C -0.535 4.535 17 H 0.038 0.962 18 C 0.011 3.989 19 N -0.945 5.945 20 Si 0.949 3.051 21 H -0.278 1.278 22 H -0.274 1.274 23 H -0.245 1.245 24 C 0.492 3.508 25 O -0.583 6.583 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.014 0.986 36 H 0.024 0.976 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.044 0.956 48 H -0.004 1.004 49 H 0.032 0.968 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.317 3.015 23.232 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.301 5.301 3 C -0.123 4.123 4 C -0.058 4.058 5 C -0.085 4.085 6 N -0.192 5.192 7 C -0.102 4.102 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.031 4.031 11 C -0.140 4.140 12 C -0.032 4.032 13 N -0.348 5.348 14 C 0.027 3.973 15 C -0.049 4.049 16 C -0.573 4.573 17 H 0.056 0.944 18 C -0.187 4.187 19 N -0.585 5.585 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.199 1.199 23 H -0.168 1.168 24 C 0.279 3.721 25 O -0.463 6.463 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.147 0.853 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.014 0.986 49 H 0.050 0.950 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.222 2.728 22.653 28.587 hybrid contribution 0.530 -0.615 -1.126 1.388 sum -16.692 2.113 21.527 27.322 Atomic orbital electron populations 1.22379 0.85597 1.02612 1.01343 1.61848 1.09470 1.14988 1.43759 1.22414 1.00461 0.88124 1.01341 1.21994 0.93137 0.98676 0.92024 1.22356 0.96323 0.98626 0.91239 1.65083 0.99437 1.18071 1.36617 1.23481 0.98684 0.89112 0.98903 1.22520 0.91854 0.99538 1.00816 1.22389 1.00573 0.92471 1.00130 1.22235 0.92407 0.98813 0.89649 1.22724 0.98378 0.96042 0.96889 1.22500 1.03240 0.93939 0.83549 1.48744 1.51077 1.24664 1.10277 1.21130 0.94584 1.00529 0.81103 1.19707 0.94294 0.95177 0.95691 1.21264 1.03390 1.34025 0.98638 0.94413 1.25930 0.98956 0.96881 0.96910 1.70045 1.20727 1.47487 1.20208 0.85689 0.77805 0.78810 0.80516 1.20335 1.19929 1.16822 1.21886 0.77131 0.80583 0.92458 1.90667 1.56551 1.40650 1.58383 0.94373 0.90730 0.91356 0.92341 0.90857 0.94124 0.90786 0.92462 0.90238 0.96760 0.95710 0.87201 0.90287 0.87785 0.93572 0.87392 0.88175 0.85344 0.89188 0.89566 0.89390 0.93777 0.98578 0.94956 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.57 127.69 1.22 1.68 16 2 N -0.58 -12.56 5.02 -948.84 -4.76 -17.32 16 3 C 0.02 0.46 9.32 127.69 1.19 1.65 16 4 C 0.07 1.44 4.63 86.30 0.40 1.84 16 5 C 0.04 1.09 4.15 86.30 0.36 1.45 16 6 N -0.47 -10.28 5.02 -839.73 -4.22 -14.50 16 7 C 0.03 0.51 5.11 86.63 0.44 0.96 16 8 C -0.11 -1.85 7.07 31.89 0.23 -1.62 16 9 C -0.12 -2.60 6.19 31.29 0.19 -2.40 16 10 C 0.06 1.56 0.80 3.05 0.00 1.56 16 11 C -0.10 -1.89 6.33 31.44 0.20 -1.69 16 12 C 0.09 2.09 6.84 86.87 0.59 2.69 16 13 N -0.62 -21.49 2.93 -818.11 -2.40 -23.89 16 14 C 0.15 6.36 5.89 86.38 0.51 6.86 16 15 C -0.01 -0.52 4.37 29.85 0.13 -0.39 16 16 C -0.53 -31.99 9.66 25.60 0.25 -31.75 16 17 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 18 C 0.01 0.66 5.47 84.65 0.46 1.12 16 19 N -0.94 -60.33 13.96 21.45 0.30 -60.03 16 20 Si 0.95 45.86 27.46 68.60 1.88 47.75 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.24 -10.87 6.55 99.48 0.65 -10.22 16 24 C 0.49 18.06 4.45 87.61 0.39 18.45 16 25 O -0.58 -27.40 16.55 -3.04 -0.05 -27.45 16 26 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 1.11 8.12 -2.38 -0.02 1.09 16 28 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 29 H 0.06 1.23 6.47 -2.39 -0.02 1.22 16 30 H 0.07 1.28 8.12 -2.38 -0.02 1.26 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.52 6.73 -2.39 -0.02 1.50 16 33 H 0.06 1.01 8.12 -2.38 -0.02 1.00 16 34 H 0.08 1.98 5.49 -2.39 -0.01 1.97 16 35 H 0.01 0.51 5.88 -2.38 -0.01 0.49 16 36 H 0.02 0.65 7.98 -2.39 -0.02 0.63 16 37 H 0.11 1.63 7.71 -2.39 -0.02 1.62 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.33 7.46 -2.39 -0.02 1.31 16 41 H 0.11 1.77 7.40 -2.39 -0.02 1.75 16 42 H 0.10 1.60 7.57 -2.39 -0.02 1.58 16 43 H 0.13 1.68 8.07 -2.38 -0.02 1.66 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.09 1.70 7.46 -2.38 -0.02 1.69 16 46 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 47 H 0.04 2.13 7.92 -2.38 -0.02 2.11 16 48 H 0.00 -0.22 7.56 -2.39 -0.02 -0.24 16 49 H 0.03 1.51 7.21 -2.38 -0.02 1.49 16 50 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -78.31 380.10 -1.84 -80.15 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.84 Total: 14.86 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 6.57 Total: 0.43 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -11.08 Total: -115.74 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.75 kcal Total: -78.31 -1.84 -80.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273108683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.465 kcal (2) G-P(sol) polarization free energy of solvation -78.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds