Wall clock time and date at job start Fri Apr 10 2020 18:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99667 * 2 1 4 4 C 1.46894 * 110.99877 * 123.95398 * 2 1 3 5 5 C 1.52999 * 109.47300 * 170.00030 * 4 2 1 6 6 N 1.46497 * 109.47419 * 180.02562 * 5 4 2 7 7 C 1.46816 * 124.36519 * 89.99965 * 6 5 4 8 8 C 1.54587 * 105.49771 * 163.07822 * 7 6 5 9 9 C 1.54123 * 101.65242 * 24.98292 * 8 7 6 10 10 C 1.52546 * 110.08162 * 94.64633 * 9 8 7 11 11 C 1.53148 * 109.31555 * 178.10710 * 10 9 8 12 12 N 1.46848 * 109.45467 * 301.74317 * 11 10 9 13 13 C 1.46901 * 110.99528 * 186.35277 * 12 11 10 14 14 C 1.50703 * 109.47410 * 65.64553 * 13 12 11 15 15 H 1.08001 * 119.99366 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00116 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99956 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.46929 * 89.99860 * 18 16 14 20 20 H 1.48496 * 109.46852 * 210.00222 * 18 16 14 21 21 H 1.48506 * 109.47003 * 330.00002 * 18 16 14 22 22 C 1.46856 * 111.31188 * 62.17582 * 12 11 10 23 23 C 1.52534 * 110.08650 * 216.69374 * 9 8 7 24 24 C 1.34577 * 124.36058 * 269.99843 * 6 5 4 25 25 O 1.21279 * 125.02761 * 0.68388 * 24 6 5 26 26 H 1.09004 * 109.47166 * 296.04486 * 1 2 3 27 27 H 1.08997 * 109.47322 * 56.04655 * 1 2 3 28 28 H 1.09000 * 109.47202 * 176.04633 * 1 2 3 29 29 H 1.09002 * 109.46521 * 183.95565 * 3 2 1 30 30 H 1.08994 * 109.47316 * 303.95122 * 3 2 1 31 31 H 1.08994 * 109.46900 * 63.95965 * 3 2 1 32 32 H 1.09000 * 109.47465 * 50.00228 * 4 2 1 33 33 H 1.09003 * 109.47091 * 289.99989 * 4 2 1 34 34 H 1.09000 * 109.46700 * 59.99730 * 5 4 2 35 35 H 1.09003 * 109.47015 * 300.00006 * 5 4 2 36 36 H 1.09007 * 110.23965 * 44.07418 * 7 6 5 37 37 H 1.08997 * 110.31425 * 282.12769 * 7 6 5 38 38 H 1.09006 * 110.99067 * 266.89012 * 8 7 6 39 39 H 1.08997 * 110.98907 * 143.07838 * 8 7 6 40 40 H 1.08995 * 109.49479 * 298.06222 * 10 9 8 41 41 H 1.09004 * 109.49736 * 58.15429 * 10 9 8 42 42 H 1.08993 * 109.47231 * 61.74041 * 11 10 9 43 43 H 1.09000 * 109.46946 * 181.74710 * 11 10 9 44 44 H 1.09001 * 109.46963 * 185.64486 * 13 12 11 45 45 H 1.09003 * 109.47402 * 305.64047 * 13 12 11 46 46 H 0.96999 * 119.99362 * 179.97438 * 17 16 14 47 47 H 1.09007 * 109.47545 * 177.82831 * 22 12 11 48 48 H 1.08997 * 109.47945 * 57.81035 * 22 12 11 49 49 H 1.09005 * 109.50034 * 301.83676 * 23 9 8 50 50 H 1.08999 * 109.49847 * 61.90309 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9704 6 7 4.0293 -1.7198 2.1045 7 6 4.1297 -3.1840 2.1416 8 6 5.1086 -3.5018 3.2951 9 6 4.9599 -2.2509 4.1831 10 6 3.9309 -2.5065 5.2799 11 6 3.8316 -1.2709 6.1792 12 7 5.1506 -0.9770 6.7539 13 6 5.0652 0.1094 7.7391 14 6 4.2441 -0.3451 8.9183 15 1 3.8271 -1.3412 8.9340 16 6 4.0254 0.5108 9.9769 17 7 4.5338 1.7235 9.9579 18 14 3.0070 -0.0523 11.4381 19 1 3.8963 -0.6776 12.4496 20 1 2.3171 1.1166 12.0405 21 1 1.9980 -1.0436 10.9857 22 6 6.1309 -0.6620 5.7068 23 6 6.3077 -1.8773 4.7918 24 6 4.4816 -1.1702 3.2467 25 8 4.5018 0.0183 3.4870 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5090 -1.7407 1.1756 33 1 1.7975 -0.2247 2.0628 34 1 3.9908 0.0193 0.9323 35 1 3.7023 -1.4966 0.0451 36 1 4.5251 -3.5589 1.1974 37 1 3.1536 -3.6253 2.3429 38 1 6.1294 -3.5991 2.9253 39 1 4.8019 -4.4000 3.8311 40 1 2.9595 -2.7066 4.8279 41 1 4.2396 -3.3659 5.8752 42 1 3.4940 -0.4186 5.5897 43 1 3.1198 -1.4622 6.9822 44 1 6.0677 0.3748 8.0751 45 1 4.5935 0.9789 7.2813 46 1 4.3796 2.3257 10.7025 47 1 7.0867 -0.4117 6.1672 48 1 5.7767 0.1858 5.1205 49 1 6.6902 -2.7171 5.3721 50 1 7.0116 -1.6346 3.9958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:23 Heat of formation + Delta-G solvation = -21.559720 kcal Electronic energy + Delta-G solvation = -27267.118187 eV Core-core repulsion = 23715.159502 eV Total energy + Delta-G solvation = -3551.958685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.11408 -38.07925 -37.08622 -36.35989 -34.04369 -32.39342 -30.55818 -30.35920 -28.51539 -27.83650 -26.94267 -25.14988 -24.32188 -22.76986 -21.92494 -21.75060 -20.82128 -20.07443 -18.38222 -16.82051 -16.23991 -16.16548 -15.81975 -15.41215 -14.99764 -14.98115 -14.55719 -14.31402 -13.99846 -13.95033 -13.43814 -13.32846 -13.23361 -13.16682 -12.61417 -12.51044 -12.19806 -12.12663 -12.04072 -11.98142 -11.85454 -11.80047 -11.53806 -11.45005 -11.08583 -11.02096 -10.72428 -10.57832 -10.48331 -10.07798 -9.97975 -9.55998 -9.28898 -9.03357 -8.82323 -8.62789 -8.34802 -7.00620 -5.94444 -3.95474 2.72802 2.85293 3.36104 3.41515 3.44975 3.81729 4.30441 4.43023 4.48698 4.67947 4.70694 4.85888 4.88848 4.96663 5.11892 5.14449 5.22096 5.23326 5.28603 5.33406 5.39679 5.40257 5.40908 5.57398 5.58969 5.67254 5.70756 5.71876 5.77060 5.84197 5.99170 6.03595 6.10969 6.23939 6.25428 6.45820 6.51617 6.68261 6.69147 6.73464 6.82232 6.83413 7.14742 7.44714 7.53406 7.89535 8.22034 8.32143 8.36815 8.69032 9.12522 9.68017 11.16515 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003597 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.892772 B = 7783.096318 C = 8720.978176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.018 3.982 4 C 0.036 3.964 5 C 0.132 3.868 6 N -0.626 5.626 7 C 0.105 3.895 8 C -0.126 4.126 9 C -0.088 4.088 10 C -0.093 4.093 11 C 0.061 3.939 12 N -0.533 5.533 13 C 0.194 3.806 14 C -0.504 4.504 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.042 3.958 23 C -0.089 4.089 24 C 0.528 3.472 25 O -0.511 6.511 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.028 0.972 43 H 0.082 0.918 44 H 0.028 0.972 45 H -0.010 1.010 46 H 0.260 0.740 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.077 0.923 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -10.130 -21.938 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.130 4.130 4 C -0.093 4.093 5 C 0.010 3.990 6 N -0.362 5.362 7 C -0.018 4.018 8 C -0.164 4.164 9 C -0.092 4.092 10 C -0.131 4.131 11 C -0.067 4.067 12 N -0.258 5.258 13 C 0.069 3.931 14 C -0.543 4.543 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.086 4.086 23 C -0.127 4.127 24 C 0.316 3.684 25 O -0.384 6.384 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.100 0.900 44 H 0.046 0.954 45 H 0.008 0.992 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.095 0.905 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.784 -9.909 -21.951 24.244 hybrid contribution -1.192 0.931 1.099 1.870 sum -3.976 -8.978 -20.852 23.048 Atomic orbital electron populations 1.22380 0.87034 1.02257 1.00712 1.61977 1.08135 1.14226 1.42658 1.22475 1.01112 0.88602 1.00795 1.22536 0.96029 0.98600 0.92109 1.21253 0.92736 0.97036 0.88020 1.48349 1.63716 1.07395 1.16737 1.22077 0.99872 0.80061 0.99749 1.22718 0.99933 0.98204 0.95539 1.21070 0.99056 0.93778 0.95277 1.21484 0.96143 1.00538 0.94909 1.21949 0.93141 0.94871 0.96785 1.62037 1.05978 1.44574 1.13238 1.19662 0.97150 0.87080 0.89180 1.21185 1.31481 0.99530 1.02110 0.91948 1.24999 0.96305 0.94901 0.98520 1.69974 1.45541 1.06492 1.31851 0.86522 0.80272 0.78008 0.82726 1.20670 1.21404 1.19932 1.22170 0.97082 0.96089 0.93301 1.21394 0.93130 0.99993 0.98172 1.20818 0.76349 0.89324 0.81928 1.90703 1.54813 1.16275 1.76659 0.95434 0.91231 0.91348 0.91023 0.91314 0.95138 0.90615 0.94029 0.90119 0.89808 0.90629 0.91383 0.89987 0.88983 0.92461 0.90093 0.95425 0.89960 0.95358 0.99197 0.93033 0.91799 0.93224 0.90469 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.57 60.07 0.57 0.78 16 2 N -0.55 -5.40 5.02 -251.27 -1.26 -6.66 16 3 C 0.02 0.18 9.32 60.07 0.56 0.74 16 4 C 0.04 0.39 5.28 -3.83 -0.02 0.37 16 5 C 0.13 1.41 5.86 -4.04 -0.02 1.38 16 6 N -0.63 -7.41 2.94 -172.47 -0.51 -7.91 16 7 C 0.11 0.90 7.36 -3.04 -0.02 0.87 16 8 C -0.13 -1.17 6.21 -25.31 -0.16 -1.32 16 9 C -0.09 -1.23 0.55 -155.50 -0.09 -1.31 16 10 C -0.09 -1.43 4.77 -26.89 -0.13 -1.56 16 11 C 0.06 1.27 5.08 -3.78 -0.02 1.26 16 12 N -0.53 -12.20 4.63 -235.96 -1.09 -13.30 16 13 C 0.19 5.39 4.72 -4.97 -0.02 5.37 16 14 C -0.50 -14.66 8.42 -34.44 -0.29 -14.95 16 15 H 0.06 1.77 7.11 -52.49 -0.37 1.40 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 18 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.04 0.85 5.24 -3.77 -0.02 0.83 16 23 C -0.09 -1.36 4.77 -26.89 -0.13 -1.48 16 24 C 0.53 8.25 6.32 -11.03 -0.07 8.18 16 25 O -0.51 -10.21 13.85 5.56 0.08 -10.13 16 26 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 28 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 30 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 33 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.08 0.98 6.35 -51.93 -0.33 0.65 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 39 H 0.09 0.71 7.87 -51.93 -0.41 0.31 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.03 0.64 6.68 -51.93 -0.35 0.29 16 43 H 0.08 1.84 6.68 -51.93 -0.35 1.49 16 44 H 0.03 0.83 7.98 -51.93 -0.41 0.42 16 45 H -0.01 -0.30 8.13 -51.93 -0.42 -0.72 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 48 H 0.05 1.11 5.78 -51.93 -0.30 0.81 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -33.86 380.58 -10.43 -44.29 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -9.15 Total: -2.84 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 0.05 Total: 0.63 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -2.12 Total: -54.83 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.86 -10.43 -44.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.729 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds