Wall clock time and date at job start Fri Apr 10 2020 18:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99667 * 2 1 4 4 C 1.46894 * 110.99877 * 123.95398 * 2 1 3 5 5 C 1.52999 * 109.47300 * 170.00030 * 4 2 1 6 6 N 1.46497 * 109.47419 * 180.02562 * 5 4 2 7 7 C 1.46816 * 124.36519 * 89.99965 * 6 5 4 8 8 C 1.54587 * 105.49771 * 163.07822 * 7 6 5 9 9 C 1.54123 * 101.65242 * 24.98292 * 8 7 6 10 10 C 1.52546 * 110.08162 * 94.64633 * 9 8 7 11 11 C 1.53148 * 109.31555 * 178.10710 * 10 9 8 12 12 N 1.46848 * 109.45467 * 301.74317 * 11 10 9 13 13 C 1.46901 * 110.99528 * 186.35277 * 12 11 10 14 14 C 1.50703 * 109.47410 * 65.64553 * 13 12 11 15 15 H 1.08001 * 119.99366 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00116 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99956 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.46929 * 89.99860 * 18 16 14 20 20 H 1.48496 * 109.46852 * 210.00222 * 18 16 14 21 21 H 1.48506 * 109.47003 * 330.00002 * 18 16 14 22 22 C 1.46856 * 111.31188 * 62.17582 * 12 11 10 23 23 C 1.52534 * 110.08650 * 216.69374 * 9 8 7 24 24 C 1.34577 * 124.36058 * 269.99843 * 6 5 4 25 25 O 1.21279 * 125.02761 * 0.68388 * 24 6 5 26 26 H 1.09004 * 109.47166 * 296.04486 * 1 2 3 27 27 H 1.08997 * 109.47322 * 56.04655 * 1 2 3 28 28 H 1.09000 * 109.47202 * 176.04633 * 1 2 3 29 29 H 1.09002 * 109.46521 * 183.95565 * 3 2 1 30 30 H 1.08994 * 109.47316 * 303.95122 * 3 2 1 31 31 H 1.08994 * 109.46900 * 63.95965 * 3 2 1 32 32 H 1.09000 * 109.47465 * 50.00228 * 4 2 1 33 33 H 1.09003 * 109.47091 * 289.99989 * 4 2 1 34 34 H 1.09000 * 109.46700 * 59.99730 * 5 4 2 35 35 H 1.09003 * 109.47015 * 300.00006 * 5 4 2 36 36 H 1.09007 * 110.23965 * 44.07418 * 7 6 5 37 37 H 1.08997 * 110.31425 * 282.12769 * 7 6 5 38 38 H 1.09006 * 110.99067 * 266.89012 * 8 7 6 39 39 H 1.08997 * 110.98907 * 143.07838 * 8 7 6 40 40 H 1.08995 * 109.49479 * 298.06222 * 10 9 8 41 41 H 1.09004 * 109.49736 * 58.15429 * 10 9 8 42 42 H 1.08993 * 109.47231 * 61.74041 * 11 10 9 43 43 H 1.09000 * 109.46946 * 181.74710 * 11 10 9 44 44 H 1.09001 * 109.46963 * 185.64486 * 13 12 11 45 45 H 1.09003 * 109.47402 * 305.64047 * 13 12 11 46 46 H 0.96999 * 119.99362 * 179.97438 * 17 16 14 47 47 H 1.09007 * 109.47545 * 177.82831 * 22 12 11 48 48 H 1.08997 * 109.47945 * 57.81035 * 22 12 11 49 49 H 1.09005 * 109.50034 * 301.83676 * 23 9 8 50 50 H 1.08999 * 109.49847 * 61.90309 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9704 6 7 4.0293 -1.7198 2.1045 7 6 4.1297 -3.1840 2.1416 8 6 5.1086 -3.5018 3.2951 9 6 4.9599 -2.2509 4.1831 10 6 3.9309 -2.5065 5.2799 11 6 3.8316 -1.2709 6.1792 12 7 5.1506 -0.9770 6.7539 13 6 5.0652 0.1094 7.7391 14 6 4.2441 -0.3451 8.9183 15 1 3.8271 -1.3412 8.9340 16 6 4.0254 0.5108 9.9769 17 7 4.5338 1.7235 9.9579 18 14 3.0070 -0.0523 11.4381 19 1 3.8963 -0.6776 12.4496 20 1 2.3171 1.1166 12.0405 21 1 1.9980 -1.0436 10.9857 22 6 6.1309 -0.6620 5.7068 23 6 6.3077 -1.8773 4.7918 24 6 4.4816 -1.1702 3.2467 25 8 4.5018 0.0183 3.4870 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5090 -1.7407 1.1756 33 1 1.7975 -0.2247 2.0628 34 1 3.9908 0.0193 0.9323 35 1 3.7023 -1.4966 0.0451 36 1 4.5251 -3.5589 1.1974 37 1 3.1536 -3.6253 2.3429 38 1 6.1294 -3.5991 2.9253 39 1 4.8019 -4.4000 3.8311 40 1 2.9595 -2.7066 4.8279 41 1 4.2396 -3.3659 5.8752 42 1 3.4940 -0.4186 5.5897 43 1 3.1198 -1.4622 6.9822 44 1 6.0677 0.3748 8.0751 45 1 4.5935 0.9789 7.2813 46 1 4.3796 2.3257 10.7025 47 1 7.0867 -0.4117 6.1672 48 1 5.7767 0.1858 5.1205 49 1 6.6902 -2.7171 5.3721 50 1 7.0116 -1.6346 3.9958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:22 Heat of formation + Delta-G solvation = -46.838995 kcal Electronic energy + Delta-G solvation = -27268.214379 eV Core-core repulsion = 23715.159502 eV Total energy + Delta-G solvation = -3553.054877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.23309 -39.20555 -38.35806 -37.50762 -35.59384 -34.29868 -31.91647 -31.70753 -29.56818 -28.66769 -28.59675 -26.49936 -25.39517 -24.31195 -23.64380 -22.59598 -22.01205 -21.49183 -19.55919 -18.49594 -17.80894 -17.18056 -17.03253 -16.62122 -16.26652 -15.98564 -15.88645 -15.79015 -15.38251 -15.27032 -14.89993 -14.55582 -14.31238 -14.23533 -14.04101 -13.72496 -13.51845 -13.43866 -13.18714 -13.04474 -12.98381 -12.76757 -12.75898 -12.67949 -12.61488 -12.49674 -12.21558 -12.08199 -11.99943 -11.93241 -11.53842 -11.21511 -10.98712 -10.66538 -10.48896 -9.73639 -9.50334 -8.97462 -8.22406 -6.34214 1.38171 1.41747 1.52495 1.56510 1.95619 2.38459 3.00798 3.08921 3.24892 3.41918 3.53935 3.74793 3.83472 3.97666 4.05097 4.11991 4.20867 4.31932 4.34212 4.41472 4.43730 4.51431 4.54146 4.60806 4.64376 4.65496 4.73810 4.76026 4.80209 4.86856 4.87987 4.93705 4.94643 4.96373 5.03712 5.09918 5.15690 5.20482 5.23828 5.31807 5.38212 5.59731 5.63805 5.89683 5.91076 6.02457 6.13732 6.32820 6.63357 6.82580 7.22077 7.35720 8.89637 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003597 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.892772 B = 7783.096318 C = 8720.978176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.019 3.981 4 C 0.045 3.955 5 C 0.133 3.867 6 N -0.618 5.618 7 C 0.100 3.900 8 C -0.111 4.111 9 C -0.092 4.092 10 C -0.081 4.081 11 C 0.063 3.937 12 N -0.528 5.528 13 C 0.209 3.791 14 C -0.522 4.522 15 H 0.069 0.931 16 C -0.005 4.005 17 N -0.940 5.940 18 Si 0.977 3.023 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.260 1.260 22 C 0.039 3.961 23 C -0.079 4.079 24 C 0.514 3.486 25 O -0.572 6.572 26 H 0.014 0.986 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.007 0.993 32 H 0.093 0.907 33 H 0.001 0.999 34 H 0.057 0.943 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.100 0.900 42 H -0.006 1.006 43 H 0.061 0.939 44 H 0.000 1.000 45 H -0.058 1.058 46 H 0.264 0.736 47 H 0.055 0.945 48 H 0.020 0.980 49 H 0.096 0.904 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -14.411 -23.572 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.268 5.268 3 C -0.129 4.129 4 C -0.085 4.085 5 C 0.011 3.989 6 N -0.352 5.352 7 C -0.021 4.021 8 C -0.149 4.149 9 C -0.095 4.095 10 C -0.119 4.119 11 C -0.066 4.066 12 N -0.252 5.252 13 C 0.083 3.917 14 C -0.560 4.560 15 H 0.087 0.913 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.801 3.199 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.185 1.185 22 C -0.090 4.090 23 C -0.117 4.117 24 C 0.302 3.698 25 O -0.451 6.451 26 H 0.032 0.968 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.026 0.974 32 H 0.111 0.889 33 H 0.020 0.980 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.119 0.881 42 H 0.012 0.988 43 H 0.079 0.921 44 H 0.018 0.982 45 H -0.040 1.040 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.038 0.962 49 H 0.115 0.885 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.539 -14.255 -23.641 27.833 hybrid contribution -0.959 2.354 1.529 2.966 sum -4.499 -11.902 -22.113 25.512 Atomic orbital electron populations 1.22475 0.85991 1.03378 1.00711 1.62054 1.09093 1.13936 1.41680 1.22492 1.01161 0.88812 1.00472 1.22454 0.96426 0.98917 0.90683 1.21317 0.92259 0.96564 0.88795 1.48476 1.61935 1.09211 1.15561 1.22449 1.01041 0.77368 1.01275 1.22761 1.01522 0.96114 0.94480 1.21092 0.97249 0.95938 0.95233 1.21421 0.98250 0.97633 0.94565 1.21954 0.91372 0.96635 0.96603 1.62051 1.07671 1.41713 1.13789 1.19324 0.94815 0.87145 0.90434 1.21467 1.31919 0.99955 1.02643 0.91307 1.26071 0.97418 0.94752 1.01984 1.70135 1.46844 1.07951 1.33089 0.85267 0.78591 0.77828 0.78228 1.19322 1.20911 1.18453 1.22261 0.95509 0.98197 0.93008 1.21356 0.94904 0.97748 0.97715 1.21270 0.76347 0.88845 0.83291 1.90682 1.57409 1.18948 1.78051 0.96759 0.89709 0.89898 0.91265 0.89346 0.97391 0.88862 0.98046 0.92457 0.86609 0.87192 0.89536 0.88101 0.86256 0.90237 0.88132 0.98812 0.92060 0.98215 1.03998 0.92707 0.92688 0.96194 0.88546 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.57 127.69 1.22 1.57 16 2 N -0.54 -10.25 5.02 -948.86 -4.76 -15.02 16 3 C 0.02 0.37 9.32 127.69 1.19 1.56 16 4 C 0.04 0.93 5.28 86.30 0.46 1.39 16 5 C 0.13 2.66 5.86 86.38 0.51 3.17 16 6 N -0.62 -13.32 2.94 -818.08 -2.40 -15.73 16 7 C 0.10 1.18 7.36 86.86 0.64 1.82 16 8 C -0.11 -1.47 6.21 31.51 0.20 -1.27 16 9 C -0.09 -2.35 0.55 -52.83 -0.03 -2.38 16 10 C -0.08 -2.36 4.77 30.49 0.15 -2.21 16 11 C 0.06 2.74 5.08 86.36 0.44 3.18 16 12 N -0.53 -25.48 4.63 -900.43 -4.17 -29.65 16 13 C 0.21 12.55 4.72 85.56 0.40 12.95 16 14 C -0.52 -31.58 8.42 25.60 0.22 -31.36 16 15 H 0.07 3.99 7.11 -2.91 -0.02 3.97 16 16 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -60.37 13.29 21.45 0.28 -60.09 16 18 Si 0.98 46.06 29.54 68.60 2.03 48.09 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 22 C 0.04 1.64 5.24 86.36 0.45 2.09 16 23 C -0.08 -2.32 4.77 30.49 0.15 -2.18 16 24 C 0.51 16.04 6.32 87.71 0.55 16.59 16 25 O -0.57 -24.63 13.85 -3.03 -0.04 -24.68 16 26 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 28 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.07 1.38 6.47 -2.39 -0.02 1.36 16 30 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 31 H 0.01 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 33 H 0.00 0.03 8.12 -2.39 -0.02 0.01 16 34 H 0.06 1.43 6.35 -2.39 -0.02 1.42 16 35 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.04 7.89 -2.38 -0.02 1.02 16 39 H 0.12 1.04 7.87 -2.39 -0.02 1.02 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 42 H -0.01 -0.32 6.68 -2.39 -0.02 -0.34 16 43 H 0.06 2.87 6.68 -2.39 -0.02 2.85 16 44 H 0.00 -0.02 7.98 -2.39 -0.02 -0.04 16 45 H -0.06 -3.91 8.13 -2.39 -0.02 -3.93 16 46 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 47 H 0.05 2.35 8.01 -2.38 -0.02 2.33 16 48 H 0.02 0.97 5.78 -2.39 -0.01 0.96 16 49 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 50 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -82.38 380.58 -1.18 -83.56 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.89 Total: 8.43 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 7.00 Total: 5.08 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -11.05 Total: -120.48 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -82.38 -1.18 -83.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.722 kcal (2) G-P(sol) polarization free energy of solvation -82.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds