Wall clock time and date at job start Fri Apr 10 2020 18:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99797 * 2 1 4 4 C 1.46893 * 111.00381 * 123.95655 * 2 1 3 5 5 C 1.53001 * 109.47332 * 170.00194 * 4 2 1 6 6 N 1.46501 * 109.47404 * 179.97438 * 5 4 2 7 7 C 1.33329 * 117.36288 * 89.99790 * 6 5 4 8 8 O 1.21280 * 118.67828 * 0.28322 * 7 6 5 9 9 C 1.50306 * 122.64290 * 180.26548 * 7 6 5 10 10 C 1.52912 * 109.42241 * 339.18895 * 9 7 6 11 11 C 1.53104 * 109.18996 * 52.12822 * 10 9 7 12 12 H 1.09002 * 111.89801 * 60.32595 * 11 10 9 13 13 C 1.44541 * 117.33759 * 269.95998 * 6 5 4 14 14 H 1.08993 * 110.68317 * 45.00537 * 13 6 5 15 15 C 1.54364 * 110.77915 * 282.65163 * 13 6 5 16 16 C 1.54254 * 104.92132 * 217.44183 * 15 13 6 17 17 N 1.48050 * 106.83699 * 358.49722 * 16 15 13 18 18 C 1.46904 * 111.00407 * 146.60991 * 17 16 15 19 19 C 1.53000 * 109.46758 * 69.87477 * 18 17 16 20 20 C 1.50706 * 109.46946 * 180.02562 * 19 18 17 21 21 H 1.07993 * 119.99605 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99731 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99207 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00193 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47097 * 89.99962 * 24 22 20 26 26 H 1.48496 * 109.47061 * 210.00021 * 24 22 20 27 27 H 1.48502 * 109.47012 * 329.99955 * 24 22 20 28 28 H 1.09003 * 109.46986 * 296.03907 * 1 2 3 29 29 H 1.08993 * 109.47424 * 56.04635 * 1 2 3 30 30 H 1.09003 * 109.46928 * 176.04567 * 1 2 3 31 31 H 1.09005 * 109.46991 * 183.95400 * 3 2 1 32 32 H 1.08992 * 109.47090 * 303.95692 * 3 2 1 33 33 H 1.09004 * 109.46794 * 63.95789 * 3 2 1 34 34 H 1.09004 * 109.47478 * 49.99923 * 4 2 1 35 35 H 1.09008 * 109.47105 * 289.99993 * 4 2 1 36 36 H 1.08996 * 109.47322 * 59.99630 * 5 4 2 37 37 H 1.08995 * 109.47203 * 299.99791 * 5 4 2 38 38 H 1.08999 * 109.47672 * 219.20754 * 9 7 6 39 39 H 1.09004 * 109.48080 * 99.17869 * 9 7 6 40 40 H 1.09005 * 109.52254 * 292.21654 * 10 9 7 41 41 H 1.09001 * 109.52150 * 172.04421 * 10 9 7 42 42 H 1.09002 * 110.36795 * 98.54973 * 15 13 6 43 43 H 1.08995 * 110.36970 * 336.33498 * 15 13 6 44 44 H 1.09002 * 109.99042 * 117.84170 * 16 15 13 45 45 H 1.08996 * 109.98949 * 239.11228 * 16 15 13 46 46 H 1.08997 * 109.47313 * 189.87216 * 18 17 16 47 47 H 1.09000 * 109.46756 * 309.87904 * 18 17 16 48 48 H 1.09007 * 109.47472 * 300.00116 * 19 18 17 49 49 H 1.09004 * 109.47742 * 60.00244 * 19 18 17 50 50 H 0.97010 * 119.99077 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9702 6 7 4.0297 -1.7187 2.1049 7 6 4.0575 -3.0467 1.9898 8 8 3.6564 -3.5503 0.9620 9 6 4.5663 -3.9447 3.0825 10 6 5.4693 -3.1429 4.0205 11 6 4.7278 -1.8843 4.4788 12 1 3.8103 -2.1257 5.0155 13 6 4.4766 -0.9708 3.2582 14 1 3.7571 -0.1936 3.5155 15 6 5.8633 -0.3436 3.0005 16 6 6.6061 -0.4544 4.3479 17 7 5.6641 -1.0748 5.3070 18 6 6.3775 -1.9204 6.2735 19 6 7.1970 -1.0371 7.2165 20 6 7.9294 -1.9046 8.2076 21 1 7.8214 -2.9784 8.1684 22 6 8.7380 -1.3273 9.1636 23 7 9.3774 -2.0844 10.0282 24 14 8.9252 0.5301 9.2307 25 1 7.8846 1.1006 10.1234 26 1 10.2709 0.8733 9.7567 27 1 8.7690 1.0930 7.8655 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.5091 -1.7407 1.1755 35 1 1.7976 -0.2248 2.0628 36 1 3.9910 0.0194 0.9321 37 1 3.7025 -1.4964 0.0450 38 1 5.1347 -4.7648 2.6437 39 1 3.7233 -4.3465 3.6448 40 1 6.3799 -2.8576 3.4937 41 1 5.7250 -3.7512 4.8881 42 1 5.7588 0.7018 2.7098 43 1 6.3938 -0.9001 2.2280 44 1 7.4903 -1.0818 4.2355 45 1 6.8949 0.5370 4.6968 46 1 5.6569 -2.4985 6.8518 47 1 7.0437 -2.5987 5.7404 48 1 7.9177 -0.4588 6.6382 49 1 6.5309 -0.3587 7.7495 50 1 9.9461 -1.6782 10.7010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:30 Heat of formation + Delta-G solvation = -17.371119 kcal Electronic energy + Delta-G solvation = -26957.194822 eV Core-core repulsion = 23405.417768 eV Total energy + Delta-G solvation = -3551.777054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28661 -38.86123 -37.81648 -35.56118 -33.73638 -33.12081 -31.73473 -29.72939 -28.82494 -27.97657 -27.86214 -25.03367 -24.55669 -23.70312 -21.81146 -21.73733 -21.08099 -19.39864 -18.31232 -17.20696 -16.88451 -16.75874 -15.94264 -15.75076 -15.53196 -15.14916 -14.91473 -14.50992 -14.22145 -14.09872 -13.75034 -13.60067 -13.47959 -13.21672 -12.76935 -12.62758 -12.52463 -12.32287 -12.07995 -12.01806 -11.93617 -11.92372 -11.61501 -11.56850 -11.32095 -11.13780 -10.95335 -10.90116 -10.73502 -10.15070 -9.82399 -9.79947 -9.67166 -9.26004 -8.95264 -8.67775 -8.57240 -8.08991 -6.08379 -4.06952 2.50804 2.71703 3.29329 3.36631 3.40394 3.71953 4.13054 4.29871 4.42344 4.45182 4.54305 4.67672 4.74506 4.80791 4.86626 5.00802 5.02271 5.05541 5.15448 5.18534 5.23148 5.26259 5.28488 5.31435 5.35744 5.53126 5.54775 5.57451 5.62956 5.65319 5.73612 5.80406 5.82465 5.95212 6.01033 6.06463 6.14787 6.24838 6.30891 6.63760 6.66683 6.67677 7.01483 7.06641 7.32621 7.38789 7.49044 7.78161 8.03460 8.47923 8.95337 9.54019 11.04877 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.003050 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.670305 B = 9177.928102 C = 9991.946382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.019 3.981 4 C 0.043 3.957 5 C 0.109 3.891 6 N -0.591 5.591 7 C 0.520 3.480 8 O -0.552 6.552 9 C -0.131 4.131 10 C -0.154 4.154 11 C 0.059 3.941 12 H 0.103 0.897 13 C 0.144 3.856 14 H 0.094 0.906 15 C -0.143 4.143 16 C 0.039 3.961 17 N -0.511 5.511 18 C 0.061 3.939 19 C -0.006 4.006 20 C -0.522 4.522 21 H 0.071 0.929 22 C 0.068 3.932 23 N -0.903 5.903 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.265 1.265 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.036 0.964 48 H 0.014 0.986 49 H 0.020 0.980 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 4.867 -18.913 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.129 4.129 4 C -0.086 4.086 5 C -0.014 4.014 6 N -0.323 5.323 7 C 0.309 3.691 8 O -0.430 6.430 9 C -0.172 4.172 10 C -0.193 4.193 11 C -0.050 4.050 12 H 0.121 0.879 13 C 0.039 3.961 14 H 0.112 0.888 15 C -0.182 4.182 16 C -0.090 4.090 17 N -0.234 5.234 18 C -0.066 4.066 19 C -0.044 4.044 20 C -0.561 4.561 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.542 5.542 24 Si 0.709 3.291 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.190 1.190 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.033 0.967 49 H 0.038 0.962 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.543 4.761 -19.370 24.685 hybrid contribution 0.438 0.810 0.649 1.126 sum -14.105 5.571 -18.722 24.093 Atomic orbital electron populations 1.22373 0.86958 1.02435 1.00471 1.61885 1.08126 1.13855 1.43003 1.22481 1.01079 0.88743 1.00622 1.22440 0.96118 0.98722 0.91294 1.21466 0.92734 0.96513 0.90709 1.46944 1.62198 1.05961 1.17199 1.20272 0.77709 0.82307 0.88811 1.90716 1.48434 1.73653 1.30180 1.21605 1.01421 0.98245 0.95899 1.22300 0.99038 0.97718 1.00221 1.23088 0.97851 0.91603 0.92437 0.87882 1.21496 0.96167 0.93966 0.84478 0.88821 1.22907 0.95546 1.01462 0.98262 1.22880 0.94838 1.01040 0.90202 1.65112 1.16319 1.29229 1.12765 1.22356 0.96111 0.95026 0.93113 1.19528 0.94589 0.95822 0.94412 1.21064 1.26826 0.94897 1.13302 0.91133 1.25001 0.95124 0.98090 0.95161 1.69918 1.30465 1.35397 1.18394 0.86747 0.77298 0.86221 0.78822 1.20247 1.21522 1.18987 0.95623 0.91242 0.91259 0.91073 0.91294 0.95471 0.90325 0.94619 0.90592 0.88648 0.88173 0.88193 0.90930 0.89314 0.90760 0.91052 0.93115 0.90061 0.91272 0.94579 0.96730 0.96188 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.57 60.06 0.57 0.77 16 2 N -0.54 -4.93 5.02 -251.25 -1.26 -6.19 16 3 C 0.02 0.14 9.32 60.07 0.56 0.70 16 4 C 0.04 0.42 5.27 -3.83 -0.02 0.40 16 5 C 0.11 1.10 5.01 -4.04 -0.02 1.08 16 6 N -0.59 -6.42 2.42 -166.38 -0.40 -6.83 16 7 C 0.52 6.56 7.47 -11.82 -0.09 6.47 16 8 O -0.55 -8.72 16.19 5.56 0.09 -8.63 16 9 C -0.13 -1.41 6.07 -28.12 -0.17 -1.58 16 10 C -0.15 -1.79 4.04 -26.72 -0.11 -1.89 16 11 C 0.06 0.71 3.45 -65.74 -0.23 0.49 16 12 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 13 C 0.14 1.52 3.15 -67.47 -0.21 1.30 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.14 -1.52 5.76 -25.36 -0.15 -1.66 16 16 C 0.04 0.53 5.07 -2.53 -0.01 0.52 16 17 N -0.51 -7.67 5.26 -222.21 -1.17 -8.84 16 18 C 0.06 1.11 3.63 -3.82 -0.01 1.10 16 19 C -0.01 -0.13 4.10 -27.88 -0.11 -0.25 16 20 C -0.52 -14.42 9.66 -34.43 -0.33 -14.75 16 21 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 22 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 23 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 24 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 31 H 0.07 0.49 6.47 -51.93 -0.34 0.15 16 32 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.88 8.06 -51.93 -0.42 0.47 16 35 H 0.04 0.34 8.12 -51.92 -0.42 -0.08 16 36 H 0.08 0.65 6.22 -51.93 -0.32 0.33 16 37 H 0.10 1.15 7.14 -51.93 -0.37 0.78 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.90 6.57 -51.93 -0.34 0.55 16 41 H 0.09 1.09 6.66 -51.93 -0.35 0.75 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.77 7.97 -51.93 -0.41 0.35 16 44 H 0.05 0.74 7.27 -51.93 -0.38 0.36 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 47 H 0.04 0.66 6.37 -51.93 -0.33 0.33 16 48 H 0.01 0.33 6.57 -51.93 -0.34 -0.01 16 49 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 50 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -31.52 377.03 -10.46 -41.98 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -9.07 Total: -1.80 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.43 Total: -5.47 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -2.06 Total: -48.50 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.52 -10.46 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.607 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds