Wall clock time and date at job start Fri Apr 10 2020 18:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99797 * 2 1 4 4 C 1.46893 * 111.00381 * 123.95655 * 2 1 3 5 5 C 1.53001 * 109.47332 * 170.00194 * 4 2 1 6 6 N 1.46501 * 109.47404 * 179.97438 * 5 4 2 7 7 C 1.33329 * 117.36288 * 89.99790 * 6 5 4 8 8 O 1.21280 * 118.67828 * 0.28322 * 7 6 5 9 9 C 1.50306 * 122.64290 * 180.26548 * 7 6 5 10 10 C 1.52912 * 109.42241 * 339.18895 * 9 7 6 11 11 C 1.53104 * 109.18996 * 52.12822 * 10 9 7 12 12 H 1.09002 * 111.89801 * 60.32595 * 11 10 9 13 13 C 1.44541 * 117.33759 * 269.95998 * 6 5 4 14 14 H 1.08993 * 110.68317 * 45.00537 * 13 6 5 15 15 C 1.54364 * 110.77915 * 282.65163 * 13 6 5 16 16 C 1.54254 * 104.92132 * 217.44183 * 15 13 6 17 17 N 1.48050 * 106.83699 * 358.49722 * 16 15 13 18 18 C 1.46904 * 111.00407 * 146.60991 * 17 16 15 19 19 C 1.53000 * 109.46758 * 69.87477 * 18 17 16 20 20 C 1.50706 * 109.46946 * 180.02562 * 19 18 17 21 21 H 1.07993 * 119.99605 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99731 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99207 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00193 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47097 * 89.99962 * 24 22 20 26 26 H 1.48496 * 109.47061 * 210.00021 * 24 22 20 27 27 H 1.48502 * 109.47012 * 329.99955 * 24 22 20 28 28 H 1.09003 * 109.46986 * 296.03907 * 1 2 3 29 29 H 1.08993 * 109.47424 * 56.04635 * 1 2 3 30 30 H 1.09003 * 109.46928 * 176.04567 * 1 2 3 31 31 H 1.09005 * 109.46991 * 183.95400 * 3 2 1 32 32 H 1.08992 * 109.47090 * 303.95692 * 3 2 1 33 33 H 1.09004 * 109.46794 * 63.95789 * 3 2 1 34 34 H 1.09004 * 109.47478 * 49.99923 * 4 2 1 35 35 H 1.09008 * 109.47105 * 289.99993 * 4 2 1 36 36 H 1.08996 * 109.47322 * 59.99630 * 5 4 2 37 37 H 1.08995 * 109.47203 * 299.99791 * 5 4 2 38 38 H 1.08999 * 109.47672 * 219.20754 * 9 7 6 39 39 H 1.09004 * 109.48080 * 99.17869 * 9 7 6 40 40 H 1.09005 * 109.52254 * 292.21654 * 10 9 7 41 41 H 1.09001 * 109.52150 * 172.04421 * 10 9 7 42 42 H 1.09002 * 110.36795 * 98.54973 * 15 13 6 43 43 H 1.08995 * 110.36970 * 336.33498 * 15 13 6 44 44 H 1.09002 * 109.99042 * 117.84170 * 16 15 13 45 45 H 1.08996 * 109.98949 * 239.11228 * 16 15 13 46 46 H 1.08997 * 109.47313 * 189.87216 * 18 17 16 47 47 H 1.09000 * 109.46756 * 309.87904 * 18 17 16 48 48 H 1.09007 * 109.47472 * 300.00116 * 19 18 17 49 49 H 1.09004 * 109.47742 * 60.00244 * 19 18 17 50 50 H 0.97010 * 119.99077 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9702 6 7 4.0297 -1.7187 2.1049 7 6 4.0575 -3.0467 1.9898 8 8 3.6564 -3.5503 0.9620 9 6 4.5663 -3.9447 3.0825 10 6 5.4693 -3.1429 4.0205 11 6 4.7278 -1.8843 4.4788 12 1 3.8103 -2.1257 5.0155 13 6 4.4766 -0.9708 3.2582 14 1 3.7571 -0.1936 3.5155 15 6 5.8633 -0.3436 3.0005 16 6 6.6061 -0.4544 4.3479 17 7 5.6641 -1.0748 5.3070 18 6 6.3775 -1.9204 6.2735 19 6 7.1970 -1.0371 7.2165 20 6 7.9294 -1.9046 8.2076 21 1 7.8214 -2.9784 8.1684 22 6 8.7380 -1.3273 9.1636 23 7 9.3774 -2.0844 10.0282 24 14 8.9252 0.5301 9.2307 25 1 7.8846 1.1006 10.1234 26 1 10.2709 0.8733 9.7567 27 1 8.7690 1.0930 7.8655 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.5091 -1.7407 1.1755 35 1 1.7976 -0.2248 2.0628 36 1 3.9910 0.0194 0.9321 37 1 3.7025 -1.4964 0.0450 38 1 5.1347 -4.7648 2.6437 39 1 3.7233 -4.3465 3.6448 40 1 6.3799 -2.8576 3.4937 41 1 5.7250 -3.7512 4.8881 42 1 5.7588 0.7018 2.7098 43 1 6.3938 -0.9001 2.2280 44 1 7.4903 -1.0818 4.2355 45 1 6.8949 0.5370 4.6968 46 1 5.6569 -2.4985 6.8518 47 1 7.0437 -2.5987 5.7404 48 1 7.9177 -0.4588 6.6382 49 1 6.5309 -0.3587 7.7495 50 1 9.9461 -1.6782 10.7010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:29 Heat of formation + Delta-G solvation = -39.577517 kcal Electronic energy + Delta-G solvation = -26958.157763 eV Core-core repulsion = 23405.417768 eV Total energy + Delta-G solvation = -3552.739995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.26398 -39.93588 -38.53687 -36.66800 -35.27964 -34.38815 -33.27127 -30.94726 -29.87034 -29.03688 -28.47801 -26.23508 -25.82496 -24.58898 -23.07591 -22.76367 -22.08488 -20.69028 -19.24765 -18.98158 -18.05245 -17.74009 -16.97605 -16.56211 -16.39240 -16.25849 -15.99401 -15.71922 -15.51979 -15.14120 -15.08960 -14.76788 -14.48103 -14.25306 -14.18268 -13.68280 -13.44227 -13.28835 -13.24232 -13.11193 -12.85225 -12.72243 -12.64268 -12.56181 -12.54537 -12.45347 -11.99581 -11.92035 -11.80779 -11.70817 -11.63058 -11.49186 -11.32231 -10.74896 -10.68268 -9.84804 -9.33999 -9.31096 -8.27970 -6.31793 1.38701 1.39423 1.51733 1.52859 1.82456 2.37988 2.99411 3.08265 3.09980 3.34184 3.49059 3.62605 3.82044 3.90917 4.06145 4.09256 4.13941 4.21232 4.27510 4.32351 4.38728 4.42901 4.48533 4.50601 4.56195 4.64642 4.69313 4.72222 4.80263 4.82305 4.85378 4.87000 4.96483 4.99044 5.01428 5.06148 5.06988 5.11165 5.23000 5.32184 5.39552 5.50619 5.64959 5.95669 5.99646 6.05273 6.08520 6.30995 6.40585 6.76604 7.07050 7.33177 8.88563 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.003050 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.670305 B = 9177.928102 C = 9991.946382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.019 3.981 4 C 0.052 3.948 5 C 0.113 3.887 6 N -0.584 5.584 7 C 0.517 3.483 8 O -0.588 6.588 9 C -0.124 4.124 10 C -0.147 4.147 11 C 0.059 3.941 12 H 0.112 0.888 13 C 0.152 3.848 14 H 0.110 0.890 15 C -0.131 4.131 16 C 0.035 3.965 17 N -0.515 5.515 18 C 0.076 3.924 19 C 0.000 4.000 20 C -0.530 4.530 21 H 0.033 0.967 22 C 0.005 3.995 23 N -0.952 5.952 24 Si 0.951 3.049 25 H -0.268 1.268 26 H -0.287 1.287 27 H -0.245 1.245 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.017 0.983 49 H 0.019 0.981 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 7.332 -20.150 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.129 4.129 4 C -0.077 4.077 5 C -0.010 4.010 6 N -0.314 5.314 7 C 0.307 3.693 8 O -0.469 6.469 9 C -0.165 4.165 10 C -0.186 4.186 11 C -0.050 4.050 12 H 0.130 0.870 13 C 0.047 3.953 14 H 0.128 0.872 15 C -0.170 4.170 16 C -0.093 4.093 17 N -0.238 5.238 18 C -0.052 4.052 19 C -0.038 4.038 20 C -0.568 4.568 21 H 0.052 0.948 22 C -0.192 4.192 23 N -0.592 5.592 24 Si 0.775 3.225 25 H -0.193 1.193 26 H -0.213 1.213 27 H -0.169 1.169 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.049 0.951 48 H 0.036 0.964 49 H 0.038 0.962 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.620 7.246 -20.623 26.866 hybrid contribution 0.753 -0.036 1.017 1.266 sum -14.868 7.211 -19.606 25.640 Atomic orbital electron populations 1.22398 0.86234 1.02385 1.01213 1.61891 1.08970 1.14944 1.42702 1.22528 1.01351 0.87767 1.01265 1.22279 0.95495 0.97972 0.91947 1.21477 0.93295 0.96852 0.89377 1.46925 1.61454 1.05593 1.17472 1.20538 0.77242 0.82928 0.88573 1.90707 1.50228 1.74349 1.31591 1.21575 1.01738 0.97894 0.95244 1.22190 0.98863 0.97611 0.99909 1.23173 0.97376 0.91650 0.92777 0.87027 1.21477 0.96675 0.93641 0.83501 0.87176 1.22839 0.94795 1.02989 0.96393 1.22922 0.94612 1.00351 0.91429 1.64995 1.16421 1.28984 1.13440 1.21994 0.95648 0.94343 0.93237 1.19404 0.94652 0.95575 0.94120 1.21431 1.27050 0.93985 1.14369 0.94822 1.25980 0.94847 1.03598 0.94777 1.70073 1.31774 1.37820 1.19564 0.85643 0.77380 0.79642 0.79869 1.19339 1.21304 1.16888 0.95225 0.90033 0.91855 0.90642 0.90359 0.95064 0.92387 0.93973 0.88478 0.90757 0.87768 0.86698 0.91667 0.90203 0.88366 0.91048 0.94407 0.90284 0.91752 0.95055 0.96450 0.96223 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.57 127.69 1.22 1.57 16 2 N -0.56 -9.13 5.02 -948.83 -4.76 -13.89 16 3 C 0.02 0.22 9.32 127.69 1.19 1.41 16 4 C 0.05 0.93 5.27 86.30 0.45 1.38 16 5 C 0.11 2.06 5.01 86.38 0.43 2.49 16 6 N -0.58 -11.49 2.42 -799.52 -1.94 -13.43 16 7 C 0.52 12.44 7.47 87.76 0.66 13.09 16 8 O -0.59 -18.38 16.19 -3.03 -0.05 -18.43 16 9 C -0.12 -2.51 6.07 29.69 0.18 -2.33 16 10 C -0.15 -3.24 4.04 30.60 0.12 -3.11 16 11 C 0.06 1.29 3.45 45.07 0.16 1.45 16 12 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 13 C 0.15 2.75 3.15 46.33 0.15 2.89 16 14 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 15 C -0.13 -2.38 5.76 31.48 0.18 -2.19 16 16 C 0.04 0.88 5.07 86.51 0.44 1.32 16 17 N -0.52 -14.49 5.26 -856.95 -4.51 -19.00 16 18 C 0.08 2.73 3.63 86.30 0.31 3.04 16 19 C 0.00 0.01 4.10 29.85 0.12 0.14 16 20 C -0.53 -29.76 9.66 25.60 0.25 -29.51 16 21 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 22 C 0.00 0.27 5.47 84.66 0.46 0.74 16 23 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 24 Si 0.95 43.69 27.47 68.60 1.88 45.58 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 27 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 28 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 30 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 31 H 0.07 0.81 6.47 -2.38 -0.02 0.80 16 32 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.06 1.27 8.06 -2.38 -0.02 1.25 16 35 H 0.04 0.69 8.12 -2.38 -0.02 0.67 16 36 H 0.10 1.36 6.22 -2.39 -0.01 1.34 16 37 H 0.07 1.73 7.14 -2.39 -0.02 1.71 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.06 1.54 6.57 -2.38 -0.02 1.53 16 41 H 0.08 1.92 6.66 -2.39 -0.02 1.91 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.34 7.97 -2.39 -0.02 1.32 16 44 H 0.04 1.05 7.27 -2.39 -0.02 1.03 16 45 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 47 H 0.03 1.15 6.37 -2.39 -0.02 1.13 16 48 H 0.02 0.77 6.57 -2.38 -0.02 0.75 16 49 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 50 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -69.00 377.03 -1.91 -70.92 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.83 Total: 14.69 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 6.33 Total: -7.64 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -10.91 Total: -105.12 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.05 Total: -18.43 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -69.00 -1.91 -70.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.340 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds