Wall clock time and date at job start Fri Apr 10 2020 18:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.04241 * 4 2 1 6 6 N 1.46499 * 109.46840 * 179.97438 * 5 4 2 7 7 C 1.46888 * 124.37108 * 90.00428 * 6 5 4 8 8 C 1.54705 * 105.51829 * 196.78182 * 7 6 5 9 9 C 1.53598 * 101.51287 * 335.47911 * 8 7 6 10 10 C 1.53255 * 111.08970 * 144.99360 * 9 8 7 11 11 C 1.54641 * 104.67560 * 120.48202 * 10 9 8 12 12 N 1.48659 * 104.63331 * 23.68224 * 11 10 9 13 13 C 1.46895 * 110.99967 * 201.49122 * 12 11 10 14 14 C 1.53004 * 109.47189 * 290.12507 * 13 12 11 15 15 C 1.50703 * 109.47195 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00075 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99901 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00057 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99812 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47093 * 90.00103 * 19 17 15 21 21 H 1.48500 * 109.47152 * 209.99758 * 19 17 15 22 22 H 1.48495 * 109.47082 * 329.99827 * 19 17 15 23 23 C 1.48799 * 104.38213 * 321.14174 * 12 11 10 24 24 C 1.34756 * 124.37555 * 269.70009 * 6 5 4 25 25 O 1.21279 * 125.13093 * 359.02762 * 24 6 5 26 26 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 27 27 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 28 28 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 29 29 H 1.09001 * 109.47139 * 183.95526 * 3 2 1 30 30 H 1.09002 * 109.47085 * 303.95569 * 3 2 1 31 31 H 1.08999 * 109.46941 * 63.95211 * 3 2 1 32 32 H 1.09001 * 109.46874 * 306.04522 * 4 2 1 33 33 H 1.08992 * 109.47407 * 186.04539 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00295 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00475 * 5 4 2 36 36 H 1.09000 * 110.23100 * 315.79329 * 7 6 5 37 37 H 1.08998 * 110.23464 * 77.76560 * 7 6 5 38 38 H 1.08997 * 111.02084 * 93.54012 * 8 7 6 39 39 H 1.09001 * 111.01702 * 217.42034 * 8 7 6 40 40 H 1.08998 * 110.39723 * 239.28475 * 10 9 8 41 41 H 1.09003 * 110.39587 * 1.68674 * 10 9 8 42 42 H 1.09001 * 110.40304 * 142.46888 * 11 10 9 43 43 H 1.08997 * 110.40636 * 264.89808 * 11 10 9 44 44 H 1.09006 * 109.47182 * 50.12565 * 13 12 11 45 45 H 1.08998 * 109.47597 * 170.13009 * 13 12 11 46 46 H 1.08997 * 109.47090 * 300.00398 * 14 13 12 47 47 H 1.09003 * 109.47024 * 60.00210 * 14 13 12 48 48 H 0.96997 * 120.00221 * 180.02562 * 18 17 15 49 49 H 1.09003 * 110.45880 * 279.82791 * 23 12 11 50 50 H 1.08997 * 110.45555 * 157.26287 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 7 2.1570 -3.0066 2.1044 7 6 1.4204 -3.2527 3.3512 8 6 2.4859 -3.6990 4.3802 9 6 3.5850 -4.2542 3.4622 10 6 4.9778 -3.9691 4.0347 11 6 5.6169 -5.3645 4.2235 12 7 4.8922 -6.2421 3.2672 13 6 5.0042 -7.6534 3.6590 14 6 6.4420 -8.1301 3.4431 15 6 6.5571 -9.5778 3.8457 16 1 5.6913 -10.1052 4.2179 17 6 7.7678 -10.2289 3.7388 18 7 8.8220 -9.5867 3.2850 19 14 7.9102 -12.0235 4.2371 20 1 7.6239 -12.8873 3.0637 21 1 9.2860 -12.2936 4.7266 22 1 6.9342 -12.3163 5.3172 23 6 3.4798 -5.7794 3.3385 24 6 3.3764 -3.5793 2.1363 25 8 4.1843 -3.5517 1.2322 26 1 -0.3633 0.4513 0.9234 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3633 -1.0251 -0.0708 29 1 3.0829 1.3432 -0.0709 30 1 1.5899 1.9164 -0.8524 31 1 1.7044 1.8724 0.9233 32 1 1.5612 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 0.5472 -2.3475 0.9322 35 1 2.0658 -2.6214 0.0451 36 1 0.9316 -2.3381 3.6870 37 1 0.6838 -4.0426 3.2042 38 1 2.8510 -2.8500 4.9581 39 1 2.0944 -4.4767 5.0360 40 1 5.5628 -3.3751 3.3326 41 1 4.8968 -3.4556 4.9928 42 1 6.6789 -5.3322 3.9798 43 1 5.4711 -5.7142 5.2455 44 1 4.7401 -7.7604 4.7112 45 1 4.3273 -8.2541 3.0516 46 1 6.7061 -8.0230 2.3910 47 1 7.1190 -7.5295 4.0506 48 1 9.6736 -10.0449 3.2094 49 1 2.9850 -6.1994 4.2142 50 1 2.9434 -6.0517 2.4295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:32 Heat of formation + Delta-G solvation = -18.669023 kcal Electronic energy + Delta-G solvation = -26272.846595 eV Core-core repulsion = 22721.013260 eV Total energy + Delta-G solvation = -3551.833335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12474 -38.30673 -37.50174 -36.28483 -34.02499 -32.69366 -30.97195 -28.91324 -28.85590 -27.99172 -27.82260 -25.09527 -24.52063 -23.07948 -21.89222 -21.75701 -20.78644 -19.77639 -18.87393 -16.87113 -16.41302 -16.29163 -15.96798 -15.59219 -15.40481 -14.90897 -14.79816 -14.45689 -14.30717 -14.03396 -13.68158 -13.60832 -13.37911 -12.90061 -12.71588 -12.59772 -12.46922 -12.25113 -12.10580 -12.04378 -11.96338 -11.86974 -11.55666 -11.24112 -11.13013 -11.02223 -10.89080 -10.77698 -10.62288 -10.48452 -9.78386 -9.54574 -9.32347 -9.07621 -8.92998 -8.70816 -8.29219 -7.81882 -5.94490 -3.97203 2.61361 2.76746 3.35065 3.40933 3.43672 3.70000 4.11794 4.25310 4.45075 4.47453 4.55901 4.67507 4.73413 4.76335 4.92063 4.95210 4.98253 5.09237 5.12243 5.15645 5.23236 5.28259 5.40953 5.44516 5.47402 5.51417 5.52122 5.59581 5.62213 5.68336 5.78040 5.82213 5.92173 5.98146 6.18711 6.26865 6.40528 6.44372 6.52525 6.58107 6.63824 6.98685 7.02168 7.41013 7.51787 7.79898 7.94721 8.14256 8.24943 8.47904 9.10230 9.66017 11.16842 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.002407 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.119313 B =11631.194184 C =11844.723202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.545 5.545 3 C 0.026 3.974 4 C 0.040 3.960 5 C 0.131 3.869 6 N -0.629 5.629 7 C 0.105 3.895 8 C -0.123 4.123 9 C -0.098 4.098 10 C -0.103 4.103 11 C 0.040 3.960 12 N -0.504 5.504 13 C 0.053 3.947 14 C 0.029 3.971 15 C -0.522 4.522 16 H 0.053 0.947 17 C 0.057 3.943 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.057 3.943 24 C 0.536 3.464 25 O -0.502 6.502 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.022 0.978 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.016 0.984 48 H 0.260 0.740 49 H 0.051 0.949 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.756 21.500 0.667 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.122 4.122 4 C -0.089 4.089 5 C 0.009 3.991 6 N -0.365 5.365 7 C -0.018 4.018 8 C -0.161 4.161 9 C -0.103 4.103 10 C -0.142 4.142 11 C -0.088 4.088 12 N -0.228 5.228 13 C -0.074 4.074 14 C -0.008 4.008 15 C -0.561 4.561 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.071 4.071 24 C 0.323 3.677 25 O -0.375 6.375 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.035 0.965 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.769 21.320 -0.912 28.419 hybrid contribution -0.595 -0.668 1.851 2.056 sum -19.365 20.652 0.939 28.326 Atomic orbital electron populations 1.22478 0.87376 1.02459 1.00547 1.61880 1.07970 1.14114 1.42979 1.22382 1.01111 0.88316 1.00427 1.22522 1.01118 0.94025 0.91226 1.21260 0.98850 0.89725 0.89281 1.48382 1.17082 1.53945 1.17063 1.22098 0.94882 1.01031 0.83797 1.22732 0.94769 1.01903 0.96724 1.21425 0.97513 0.97330 0.93985 1.22246 0.92987 0.98541 1.00408 1.23106 1.00171 0.91002 0.94526 1.65569 1.05776 1.04419 1.47058 1.22508 1.02295 0.85732 0.96869 1.19043 0.88693 0.95086 0.97985 1.21190 0.95237 0.96377 1.43260 0.92847 1.25004 0.95923 0.98056 0.95400 1.69979 1.00458 1.36444 1.46220 0.86598 0.77206 0.85432 0.78758 1.20658 1.21257 1.19985 1.22854 0.93230 0.90082 1.00971 1.20367 0.80869 0.77576 0.88877 1.90750 1.46695 1.58908 1.41131 0.95647 0.91222 0.91063 0.91111 0.91166 0.95695 0.94694 0.90238 0.90606 0.89052 0.90818 0.91075 0.89767 0.88946 0.90296 0.90917 0.89493 0.93884 0.95935 0.92097 0.95639 0.96541 0.93013 0.93116 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.07 0.56 0.68 16 2 N -0.55 -4.64 5.02 -251.25 -1.26 -5.90 16 3 C 0.03 0.18 9.57 60.07 0.57 0.76 16 4 C 0.04 0.37 5.28 -3.82 -0.02 0.34 16 5 C 0.13 1.27 5.88 -4.04 -0.02 1.24 16 6 N -0.63 -6.80 2.94 -172.52 -0.51 -7.31 16 7 C 0.11 0.79 7.36 -2.93 -0.02 0.77 16 8 C -0.12 -1.03 6.20 -25.52 -0.16 -1.19 16 9 C -0.10 -1.27 0.83 -155.25 -0.13 -1.40 16 10 C -0.10 -1.43 6.28 -25.74 -0.16 -1.59 16 11 C 0.04 0.69 5.76 -1.99 -0.01 0.68 16 12 N -0.50 -9.79 5.37 -230.15 -1.24 -11.03 16 13 C 0.05 1.16 4.75 -3.82 -0.02 1.14 16 14 C 0.03 0.79 5.03 -27.88 -0.14 0.65 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.06 0.87 5.66 -2.57 -0.01 0.85 16 24 C 0.54 7.88 6.60 -11.22 -0.07 7.81 16 25 O -0.50 -9.70 17.17 5.56 0.10 -9.60 16 26 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 28 H 0.07 0.42 6.47 -51.93 -0.34 0.08 16 29 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 30 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.08 0.56 6.55 -51.93 -0.34 0.22 16 35 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.60 7.60 -51.93 -0.39 0.21 16 39 H 0.09 0.66 7.46 -51.93 -0.39 0.28 16 40 H 0.08 1.21 7.48 -51.93 -0.39 0.82 16 41 H 0.07 0.79 7.43 -51.93 -0.39 0.40 16 42 H 0.09 1.65 7.79 -51.93 -0.40 1.25 16 43 H 0.04 0.71 7.81 -51.93 -0.41 0.30 16 44 H 0.02 0.47 7.88 -51.93 -0.41 0.06 16 45 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.02 0.46 7.27 -51.93 -0.38 0.08 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.05 0.68 7.32 -51.93 -0.38 0.30 16 50 H 0.08 1.19 7.84 -51.93 -0.41 0.78 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -34.55 390.00 -10.58 -45.13 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -9.21 Total: -4.34 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.05 Total: -3.06 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -2.27 Total: -50.99 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.10 Total: -9.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.55 -10.58 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.460 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds