Wall clock time and date at job start Fri Apr 10 2020 18:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.04241 * 4 2 1 6 6 N 1.46499 * 109.46840 * 179.97438 * 5 4 2 7 7 C 1.46888 * 124.37108 * 90.00428 * 6 5 4 8 8 C 1.54705 * 105.51829 * 196.78182 * 7 6 5 9 9 C 1.53598 * 101.51287 * 335.47911 * 8 7 6 10 10 C 1.53255 * 111.08970 * 144.99360 * 9 8 7 11 11 C 1.54641 * 104.67560 * 120.48202 * 10 9 8 12 12 N 1.48659 * 104.63331 * 23.68224 * 11 10 9 13 13 C 1.46895 * 110.99967 * 201.49122 * 12 11 10 14 14 C 1.53004 * 109.47189 * 290.12507 * 13 12 11 15 15 C 1.50703 * 109.47195 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00075 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99901 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00057 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99812 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47093 * 90.00103 * 19 17 15 21 21 H 1.48500 * 109.47152 * 209.99758 * 19 17 15 22 22 H 1.48495 * 109.47082 * 329.99827 * 19 17 15 23 23 C 1.48799 * 104.38213 * 321.14174 * 12 11 10 24 24 C 1.34756 * 124.37555 * 269.70009 * 6 5 4 25 25 O 1.21279 * 125.13093 * 359.02762 * 24 6 5 26 26 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 27 27 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 28 28 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 29 29 H 1.09001 * 109.47139 * 183.95526 * 3 2 1 30 30 H 1.09002 * 109.47085 * 303.95569 * 3 2 1 31 31 H 1.08999 * 109.46941 * 63.95211 * 3 2 1 32 32 H 1.09001 * 109.46874 * 306.04522 * 4 2 1 33 33 H 1.08992 * 109.47407 * 186.04539 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00295 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00475 * 5 4 2 36 36 H 1.09000 * 110.23100 * 315.79329 * 7 6 5 37 37 H 1.08998 * 110.23464 * 77.76560 * 7 6 5 38 38 H 1.08997 * 111.02084 * 93.54012 * 8 7 6 39 39 H 1.09001 * 111.01702 * 217.42034 * 8 7 6 40 40 H 1.08998 * 110.39723 * 239.28475 * 10 9 8 41 41 H 1.09003 * 110.39587 * 1.68674 * 10 9 8 42 42 H 1.09001 * 110.40304 * 142.46888 * 11 10 9 43 43 H 1.08997 * 110.40636 * 264.89808 * 11 10 9 44 44 H 1.09006 * 109.47182 * 50.12565 * 13 12 11 45 45 H 1.08998 * 109.47597 * 170.13009 * 13 12 11 46 46 H 1.08997 * 109.47090 * 300.00398 * 14 13 12 47 47 H 1.09003 * 109.47024 * 60.00210 * 14 13 12 48 48 H 0.96997 * 120.00221 * 180.02562 * 18 17 15 49 49 H 1.09003 * 110.45880 * 279.82791 * 23 12 11 50 50 H 1.08997 * 110.45555 * 157.26287 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 7 2.1570 -3.0066 2.1044 7 6 1.4204 -3.2527 3.3512 8 6 2.4859 -3.6990 4.3802 9 6 3.5850 -4.2542 3.4622 10 6 4.9778 -3.9691 4.0347 11 6 5.6169 -5.3645 4.2235 12 7 4.8922 -6.2421 3.2672 13 6 5.0042 -7.6534 3.6590 14 6 6.4420 -8.1301 3.4431 15 6 6.5571 -9.5778 3.8457 16 1 5.6913 -10.1052 4.2179 17 6 7.7678 -10.2289 3.7388 18 7 8.8220 -9.5867 3.2850 19 14 7.9102 -12.0235 4.2371 20 1 7.6239 -12.8873 3.0637 21 1 9.2860 -12.2936 4.7266 22 1 6.9342 -12.3163 5.3172 23 6 3.4798 -5.7794 3.3385 24 6 3.3764 -3.5793 2.1363 25 8 4.1843 -3.5517 1.2322 26 1 -0.3633 0.4513 0.9234 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3633 -1.0251 -0.0708 29 1 3.0829 1.3432 -0.0709 30 1 1.5899 1.9164 -0.8524 31 1 1.7044 1.8724 0.9233 32 1 1.5612 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 0.5472 -2.3475 0.9322 35 1 2.0658 -2.6214 0.0451 36 1 0.9316 -2.3381 3.6870 37 1 0.6838 -4.0426 3.2042 38 1 2.8510 -2.8500 4.9581 39 1 2.0944 -4.4767 5.0360 40 1 5.5628 -3.3751 3.3326 41 1 4.8968 -3.4556 4.9928 42 1 6.6789 -5.3322 3.9798 43 1 5.4711 -5.7142 5.2455 44 1 4.7401 -7.7604 4.7112 45 1 4.3273 -8.2541 3.0516 46 1 6.7061 -8.0230 2.3910 47 1 7.1190 -7.5295 4.0506 48 1 9.6736 -10.0449 3.2094 49 1 2.9850 -6.1994 4.2142 50 1 2.9434 -6.0517 2.4295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:31 Heat of formation + Delta-G solvation = -44.519416 kcal Electronic energy + Delta-G solvation = -26273.967552 eV Core-core repulsion = 22721.013260 eV Total energy + Delta-G solvation = -3552.954292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14782 -39.36528 -38.45182 -37.34223 -35.69785 -34.31587 -32.31289 -30.51015 -29.79872 -28.90792 -28.48910 -26.64174 -25.57021 -24.17605 -23.42605 -22.60573 -21.79952 -21.28877 -19.92167 -18.57167 -17.76116 -17.29302 -16.79054 -16.64853 -16.44998 -16.18904 -16.10297 -15.52467 -15.47548 -15.34432 -14.86257 -14.62459 -14.22751 -14.19430 -13.92824 -13.70314 -13.65617 -13.32085 -13.22523 -13.01851 -12.90972 -12.77195 -12.62505 -12.60098 -12.51813 -12.44137 -12.35157 -12.00280 -11.85007 -11.78210 -11.61591 -11.35708 -11.20856 -10.65041 -10.56250 -9.74751 -9.34136 -9.29430 -8.19952 -6.32583 1.39534 1.42305 1.51967 1.53125 1.93507 2.40144 3.06794 3.08704 3.12980 3.30362 3.47686 3.57066 3.86464 3.92940 3.98815 4.10010 4.21151 4.23833 4.38424 4.40246 4.43733 4.45994 4.48058 4.58290 4.60809 4.66183 4.67815 4.70288 4.74150 4.80169 4.87527 4.90955 4.97380 4.99937 5.03499 5.05787 5.09115 5.12639 5.17836 5.44265 5.58879 5.62836 5.77926 5.97714 6.00528 6.04291 6.10070 6.15090 6.30824 6.85102 7.19929 7.36791 8.92545 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.002407 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.119313 B =11631.194184 C =11844.723202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.051 3.949 5 C 0.132 3.868 6 N -0.620 5.620 7 C 0.101 3.899 8 C -0.112 4.112 9 C -0.097 4.097 10 C -0.094 4.094 11 C 0.039 3.961 12 N -0.539 5.539 13 C 0.072 3.928 14 C 0.037 3.963 15 C -0.543 4.543 16 H 0.065 0.935 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.258 1.258 23 C 0.061 3.939 24 C 0.524 3.476 25 O -0.567 6.567 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.113 0.887 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.060 0.940 46 H -0.019 1.019 47 H -0.008 1.008 48 H 0.263 0.737 49 H 0.080 0.920 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.303 21.829 3.067 32.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.078 4.078 5 C 0.009 3.991 6 N -0.353 5.353 7 C -0.021 4.021 8 C -0.149 4.149 9 C -0.101 4.101 10 C -0.132 4.132 11 C -0.089 4.089 12 N -0.263 5.263 13 C -0.055 4.055 14 C 0.000 4.000 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.796 3.204 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.067 4.067 24 C 0.312 3.688 25 O -0.445 6.445 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.078 0.922 46 H -0.001 1.001 47 H 0.010 0.990 48 H 0.072 0.928 49 H 0.098 0.902 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.391 21.680 1.514 31.203 hybrid contribution 0.500 -0.697 1.025 1.337 sum -21.891 20.983 2.539 30.429 Atomic orbital electron populations 1.22525 0.85761 1.03060 1.01429 1.61861 1.09558 1.14773 1.42908 1.22389 1.00491 0.87917 1.01382 1.22322 0.99464 0.93696 0.92309 1.21313 1.00159 0.89836 0.87760 1.48496 1.16015 1.52401 1.18435 1.22445 0.94612 1.03331 0.81671 1.22804 0.92747 1.03074 0.96290 1.21418 0.98615 0.95705 0.94358 1.22199 0.93076 0.96102 1.01843 1.23072 0.98440 0.92933 0.94491 1.65399 1.09250 1.03311 1.48358 1.22104 0.98337 0.87519 0.97564 1.18870 0.91873 0.94791 0.94512 1.21627 0.95870 0.97280 1.43335 0.91713 1.26067 0.95411 1.03552 0.95110 1.70142 1.01182 1.38819 1.47306 0.85353 0.77616 0.78630 0.78847 1.19900 1.20746 1.18228 1.22894 0.90410 0.91766 1.01677 1.20801 0.81486 0.77672 0.88884 1.90711 1.48989 1.61499 1.43294 0.94571 0.90519 0.90582 0.92283 0.90056 0.94793 0.92976 0.93161 0.87500 0.92297 0.87495 0.89311 0.87699 0.86621 0.92783 0.86917 0.93027 0.92634 0.94560 0.92172 1.00077 0.98997 0.92798 0.90237 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.32 127.69 1.19 1.39 16 2 N -0.57 -9.04 5.02 -948.82 -4.76 -13.80 16 3 C 0.03 0.35 9.57 127.69 1.22 1.57 16 4 C 0.05 0.88 5.28 86.30 0.46 1.34 16 5 C 0.13 2.40 5.88 86.38 0.51 2.91 16 6 N -0.62 -12.32 2.94 -818.13 -2.41 -14.73 16 7 C 0.10 1.06 7.36 86.89 0.64 1.70 16 8 C -0.11 -1.34 6.20 31.38 0.19 -1.15 16 9 C -0.10 -2.35 0.83 -52.66 -0.04 -2.39 16 10 C -0.09 -2.55 6.28 31.24 0.20 -2.35 16 11 C 0.04 1.37 5.76 86.52 0.50 1.86 16 12 N -0.54 -21.53 5.37 -882.06 -4.74 -26.26 16 13 C 0.07 3.22 4.75 86.31 0.41 3.63 16 14 C 0.04 2.11 5.03 29.85 0.15 2.26 16 15 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 16 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.93 -59.54 13.29 21.45 0.28 -59.25 16 19 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.06 1.76 5.66 86.06 0.49 2.25 16 24 C 0.52 15.48 6.60 87.51 0.58 16.06 16 25 O -0.57 -23.44 17.17 -3.03 -0.05 -23.49 16 26 H 0.04 0.30 8.14 -2.38 -0.02 0.28 16 27 H 0.08 0.68 8.12 -2.38 -0.02 0.66 16 28 H 0.08 0.69 6.47 -2.39 -0.02 0.67 16 29 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 30 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 31 H 0.03 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 33 H 0.05 1.15 8.06 -2.39 -0.02 1.13 16 34 H 0.11 1.28 6.55 -2.39 -0.02 1.27 16 35 H 0.06 1.48 7.92 -2.39 -0.02 1.46 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.91 7.60 -2.39 -0.02 0.89 16 39 H 0.12 0.96 7.46 -2.39 -0.02 0.94 16 40 H 0.05 1.74 7.48 -2.39 -0.02 1.72 16 41 H 0.11 2.12 7.43 -2.39 -0.02 2.10 16 42 H 0.05 2.14 7.79 -2.39 -0.02 2.12 16 43 H 0.06 1.80 7.81 -2.39 -0.02 1.78 16 44 H 0.04 1.50 7.88 -2.38 -0.02 1.48 16 45 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 46 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 47 H -0.01 -0.51 7.27 -2.39 -0.02 -0.52 16 48 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 49 H 0.08 1.87 7.32 -2.39 -0.02 1.85 16 50 H 0.06 2.00 7.84 -2.39 -0.02 1.98 16 Total: -1.00 -81.81 390.00 -1.59 -83.40 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.88 Total: 9.23 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 7.18 Total: -2.48 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -11.62 Total: -114.05 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -81.81 -1.59 -83.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.881 kcal (2) G-P(sol) polarization free energy of solvation -81.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds