Wall clock time and date at job start Fri Apr 10 2020 18:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00062 * 2 1 4 4 C 1.46902 * 110.99644 * 123.95170 * 2 1 3 5 5 C 1.53006 * 109.46626 * 170.00094 * 4 2 1 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 2 7 7 C 1.46881 * 124.37179 * 269.72960 * 6 5 4 8 8 C 1.54886 * 105.42974 * 163.04780 * 7 6 5 9 9 C 1.53609 * 101.43751 * 24.87243 * 8 7 6 10 10 C 1.53602 * 110.86666 * 215.18759 * 9 8 7 11 11 C 1.55165 * 102.66062 * 217.70416 * 10 9 8 12 12 N 1.48627 * 103.35946 * 36.58340 * 11 10 9 13 13 C 1.46893 * 110.99722 * 200.84913 * 12 11 10 14 14 C 1.53001 * 109.47496 * 287.45063 * 13 12 11 15 15 C 1.50707 * 109.47209 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99657 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00534 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99500 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47288 * 119.99985 * 19 17 15 22 22 H 1.48507 * 109.47007 * 239.99981 * 19 17 15 23 23 C 1.48179 * 105.86309 * 321.39439 * 12 11 10 24 24 C 1.34746 * 124.37339 * 90.01820 * 6 5 4 25 25 O 1.21286 * 125.13311 * 0.99677 * 24 6 5 26 26 H 1.08997 * 109.47092 * 296.04997 * 1 2 3 27 27 H 1.09003 * 109.47270 * 56.04720 * 1 2 3 28 28 H 1.09002 * 109.47323 * 176.04875 * 1 2 3 29 29 H 1.08992 * 109.47140 * 183.95767 * 3 2 1 30 30 H 1.09002 * 109.46408 * 303.95149 * 3 2 1 31 31 H 1.09000 * 109.47025 * 63.94802 * 3 2 1 32 32 H 1.08993 * 109.47737 * 50.00226 * 4 2 1 33 33 H 1.09000 * 109.47263 * 289.99788 * 4 2 1 34 34 H 1.09000 * 109.47050 * 299.99824 * 5 4 2 35 35 H 1.09001 * 109.46801 * 59.99937 * 5 4 2 36 36 H 1.09004 * 110.23324 * 282.18667 * 7 6 5 37 37 H 1.08999 * 110.24303 * 44.16201 * 7 6 5 38 38 H 1.09001 * 111.23680 * 266.75908 * 8 7 6 39 39 H 1.09001 * 110.89565 * 142.83965 * 8 7 6 40 40 H 1.08999 * 110.76897 * 335.99524 * 10 9 8 41 41 H 1.09004 * 110.77120 * 99.40669 * 10 9 8 42 42 H 1.08996 * 110.64415 * 278.11363 * 11 10 9 43 43 H 1.09002 * 110.78015 * 155.12296 * 11 10 9 44 44 H 1.09005 * 109.47428 * 47.45263 * 13 12 11 45 45 H 1.08999 * 109.47157 * 167.44925 * 13 12 11 46 46 H 1.08993 * 109.47065 * 299.99790 * 14 13 12 47 47 H 1.08997 * 109.47459 * 60.00411 * 14 13 12 48 48 H 0.97001 * 119.99903 * 180.02562 * 18 17 15 49 49 H 1.09007 * 110.01613 * 265.80646 * 23 12 11 50 50 H 1.08990 * 110.02299 * 144.40893 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9553 0.9704 6 7 4.0296 -1.7186 2.1052 7 6 4.5285 -1.1176 3.3491 8 6 4.5570 -2.2716 4.3818 9 6 4.6818 -3.4978 3.4651 10 6 3.9046 -4.6917 4.0395 11 6 4.8231 -5.8935 3.6937 12 7 6.1918 -5.3406 3.8666 13 6 7.1797 -6.1407 3.1306 14 6 7.3890 -7.4769 3.8461 15 6 8.4029 -8.2975 3.0913 16 1 8.8527 -7.9054 2.1911 17 6 8.7555 -9.5492 3.5495 18 7 8.2067 -10.0272 4.6448 19 14 10.0129 -10.5660 2.6142 20 1 10.4761 -9.8081 1.4242 21 1 11.1704 -10.8569 3.4978 22 1 9.3911 -11.8417 2.1767 23 6 6.1373 -3.9542 3.3463 24 6 4.1223 -3.0624 2.1405 25 8 3.8022 -3.8081 1.2390 26 1 -0.3633 0.4513 0.9232 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0709 30 1 1.5898 1.9162 -0.8525 31 1 1.7043 1.8724 0.9232 32 1 1.5090 -1.7406 1.1758 33 1 1.7975 -0.2247 2.0628 34 1 3.7024 -1.4966 0.0452 35 1 3.9909 0.0194 0.9323 36 1 5.5314 -0.7178 3.1987 37 1 3.8541 -0.3297 3.6843 38 1 3.6332 -2.3076 4.9592 39 1 5.4227 -2.1845 5.0383 40 1 3.7868 -4.5931 5.1186 41 1 2.9353 -4.7929 3.5513 42 1 4.6654 -6.2139 2.6639 43 1 4.6530 -6.7210 4.3825 44 1 6.8182 -6.3233 2.1186 45 1 8.1251 -5.6001 3.0867 46 1 7.7506 -7.2944 4.8580 47 1 6.4436 -8.0176 3.8900 48 1 8.4552 -10.9077 4.9673 49 1 6.4504 -3.9349 2.3024 50 1 6.7811 -3.3067 3.9414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:34 Heat of formation + Delta-G solvation = -20.109465 kcal Electronic energy + Delta-G solvation = -26307.429885 eV Core-core repulsion = 22755.534088 eV Total energy + Delta-G solvation = -3551.895797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20537 -38.32851 -37.51292 -36.39564 -34.02571 -32.69986 -30.97632 -28.94457 -28.86016 -28.02494 -27.82790 -25.14945 -24.50862 -23.09745 -21.93820 -21.69797 -20.77786 -19.89799 -18.89539 -17.00728 -16.44668 -16.35583 -16.02013 -15.58569 -15.30808 -15.00873 -14.69015 -14.39394 -14.31011 -14.17642 -13.77501 -13.55591 -13.35846 -12.90740 -12.73018 -12.68419 -12.52294 -12.37284 -12.13307 -12.04390 -12.00417 -11.85648 -11.38696 -11.35073 -11.19992 -10.94828 -10.89865 -10.82807 -10.64400 -10.44875 -9.76546 -9.63374 -9.32578 -9.05590 -8.99706 -8.76187 -8.29043 -7.81941 -5.94657 -3.96609 2.48770 2.69078 3.34914 3.42040 3.46635 3.65638 4.09230 4.24238 4.46860 4.49356 4.53772 4.64796 4.66306 4.73103 4.89036 4.92006 4.97705 5.05520 5.08333 5.13324 5.19836 5.24883 5.41346 5.43289 5.47090 5.48343 5.55162 5.59513 5.63724 5.68069 5.76282 5.91348 5.95139 6.03863 6.17589 6.32302 6.37895 6.48031 6.52673 6.54098 6.58834 6.92597 7.01464 7.41400 7.50528 7.81715 7.94791 8.10857 8.13068 8.49126 9.10799 9.66762 11.16776 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.002461 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.440025 B =11375.383865 C =11674.299146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.019 3.981 4 C 0.040 3.960 5 C 0.130 3.870 6 N -0.625 5.625 7 C 0.102 3.898 8 C -0.118 4.118 9 C -0.106 4.106 10 C -0.099 4.099 11 C 0.040 3.960 12 N -0.512 5.512 13 C 0.053 3.947 14 C 0.031 3.969 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.060 3.940 24 C 0.531 3.469 25 O -0.516 6.516 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.024 0.976 45 H 0.059 0.941 46 H 0.024 0.976 47 H 0.016 0.984 48 H 0.259 0.741 49 H 0.042 0.958 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.051 25.592 -2.756 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.129 4.129 4 C -0.089 4.089 5 C 0.008 3.992 6 N -0.360 5.360 7 C -0.021 4.021 8 C -0.156 4.156 9 C -0.110 4.110 10 C -0.137 4.137 11 C -0.088 4.088 12 N -0.236 5.236 13 C -0.074 4.074 14 C -0.007 4.007 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.068 4.068 24 C 0.319 3.681 25 O -0.390 6.390 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.043 0.957 47 H 0.035 0.965 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.914 24.840 -3.096 28.639 hybrid contribution 0.181 -0.085 -0.632 0.663 sum -13.734 24.755 -3.729 28.554 Atomic orbital electron populations 1.22382 0.86779 1.02603 1.00482 1.61883 1.08289 1.13875 1.42921 1.22480 1.01063 0.88732 1.00607 1.22516 0.96196 0.98854 0.91328 1.21283 0.92445 0.96323 0.89164 1.48371 1.63389 1.06915 1.17316 1.22207 0.99613 0.96534 0.83698 1.22708 1.04308 0.91998 0.96571 1.21568 0.98394 0.97327 0.93661 1.22362 0.97856 0.92580 1.00922 1.23254 0.87993 0.96801 1.00742 1.65041 1.05229 1.00404 1.52946 1.22529 0.93222 0.96661 0.94963 1.19030 0.96762 0.88805 0.96055 1.21244 1.23631 1.00995 1.10018 0.92793 1.24991 0.96524 0.97765 0.95092 1.69984 1.43209 1.17946 1.22116 0.86548 0.81365 0.80211 0.79938 1.19797 1.21016 1.21049 1.22662 0.92000 0.93161 0.99020 1.20563 0.76858 0.81828 0.88872 1.90736 1.49528 1.57054 1.41649 0.95640 0.91138 0.91135 0.91073 0.91194 0.95580 0.90279 0.94588 0.89134 0.90465 0.90901 0.90721 0.89775 0.88411 0.89864 0.91088 0.93324 0.89444 0.95752 0.92214 0.95719 0.96542 0.93110 0.93973 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.57 60.07 0.57 0.75 16 2 N -0.55 -4.52 5.02 -251.26 -1.26 -5.78 16 3 C 0.02 0.12 9.32 60.07 0.56 0.68 16 4 C 0.04 0.36 5.28 -3.82 -0.02 0.34 16 5 C 0.13 1.22 5.87 -4.04 -0.02 1.20 16 6 N -0.62 -6.60 2.94 -172.40 -0.51 -7.11 16 7 C 0.10 0.76 7.37 -2.84 -0.02 0.74 16 8 C -0.12 -1.01 6.11 -25.42 -0.16 -1.16 16 9 C -0.11 -1.35 0.77 -155.25 -0.12 -1.47 16 10 C -0.10 -1.36 6.02 -25.27 -0.15 -1.51 16 11 C 0.04 0.71 5.92 -1.72 -0.01 0.70 16 12 N -0.51 -9.65 5.26 -230.62 -1.21 -10.86 16 13 C 0.05 1.19 4.65 -3.83 -0.02 1.17 16 14 C 0.03 0.83 5.06 -27.88 -0.14 0.69 16 15 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 19 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 C 0.06 0.92 6.02 -3.12 -0.02 0.90 16 24 C 0.53 7.57 6.48 -11.22 -0.07 7.50 16 25 O -0.52 -9.51 17.44 5.55 0.10 -9.42 16 26 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.07 0.40 6.47 -51.93 -0.34 0.06 16 30 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 34 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.08 0.55 6.55 -51.93 -0.34 0.21 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 39 H 0.10 0.75 7.44 -51.93 -0.39 0.36 16 40 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 41 H 0.07 0.97 7.81 -51.93 -0.41 0.56 16 42 H 0.05 0.96 7.80 -51.93 -0.41 0.55 16 43 H 0.09 1.61 7.82 -51.93 -0.41 1.21 16 44 H 0.02 0.56 7.83 -51.93 -0.41 0.15 16 45 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 46 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.02 0.46 7.38 -51.93 -0.38 0.08 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.04 0.70 7.38 -51.93 -0.38 0.32 16 50 H 0.08 1.11 7.31 -51.93 -0.38 0.73 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -34.04 390.64 -10.55 -44.59 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -9.24 Total: -4.47 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -0.03 Total: -3.36 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -2.24 Total: -50.37 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.10 Total: -9.42 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.04 -10.55 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.480 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds