Wall clock time and date at job start Fri Apr 10 2020 18:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00062 * 2 1 4 4 C 1.46902 * 110.99644 * 123.95170 * 2 1 3 5 5 C 1.53006 * 109.46626 * 170.00094 * 4 2 1 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 2 7 7 C 1.46881 * 124.37179 * 269.72960 * 6 5 4 8 8 C 1.54886 * 105.42974 * 163.04780 * 7 6 5 9 9 C 1.53609 * 101.43751 * 24.87243 * 8 7 6 10 10 C 1.53602 * 110.86666 * 215.18759 * 9 8 7 11 11 C 1.55165 * 102.66062 * 217.70416 * 10 9 8 12 12 N 1.48627 * 103.35946 * 36.58340 * 11 10 9 13 13 C 1.46893 * 110.99722 * 200.84913 * 12 11 10 14 14 C 1.53001 * 109.47496 * 287.45063 * 13 12 11 15 15 C 1.50707 * 109.47209 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99657 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00534 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99500 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47288 * 119.99985 * 19 17 15 22 22 H 1.48507 * 109.47007 * 239.99981 * 19 17 15 23 23 C 1.48179 * 105.86309 * 321.39439 * 12 11 10 24 24 C 1.34746 * 124.37339 * 90.01820 * 6 5 4 25 25 O 1.21286 * 125.13311 * 0.99677 * 24 6 5 26 26 H 1.08997 * 109.47092 * 296.04997 * 1 2 3 27 27 H 1.09003 * 109.47270 * 56.04720 * 1 2 3 28 28 H 1.09002 * 109.47323 * 176.04875 * 1 2 3 29 29 H 1.08992 * 109.47140 * 183.95767 * 3 2 1 30 30 H 1.09002 * 109.46408 * 303.95149 * 3 2 1 31 31 H 1.09000 * 109.47025 * 63.94802 * 3 2 1 32 32 H 1.08993 * 109.47737 * 50.00226 * 4 2 1 33 33 H 1.09000 * 109.47263 * 289.99788 * 4 2 1 34 34 H 1.09000 * 109.47050 * 299.99824 * 5 4 2 35 35 H 1.09001 * 109.46801 * 59.99937 * 5 4 2 36 36 H 1.09004 * 110.23324 * 282.18667 * 7 6 5 37 37 H 1.08999 * 110.24303 * 44.16201 * 7 6 5 38 38 H 1.09001 * 111.23680 * 266.75908 * 8 7 6 39 39 H 1.09001 * 110.89565 * 142.83965 * 8 7 6 40 40 H 1.08999 * 110.76897 * 335.99524 * 10 9 8 41 41 H 1.09004 * 110.77120 * 99.40669 * 10 9 8 42 42 H 1.08996 * 110.64415 * 278.11363 * 11 10 9 43 43 H 1.09002 * 110.78015 * 155.12296 * 11 10 9 44 44 H 1.09005 * 109.47428 * 47.45263 * 13 12 11 45 45 H 1.08999 * 109.47157 * 167.44925 * 13 12 11 46 46 H 1.08993 * 109.47065 * 299.99790 * 14 13 12 47 47 H 1.08997 * 109.47459 * 60.00411 * 14 13 12 48 48 H 0.97001 * 119.99903 * 180.02562 * 18 17 15 49 49 H 1.09007 * 110.01613 * 265.80646 * 23 12 11 50 50 H 1.08990 * 110.02299 * 144.40893 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9553 0.9704 6 7 4.0296 -1.7186 2.1052 7 6 4.5285 -1.1176 3.3491 8 6 4.5570 -2.2716 4.3818 9 6 4.6818 -3.4978 3.4651 10 6 3.9046 -4.6917 4.0395 11 6 4.8231 -5.8935 3.6937 12 7 6.1918 -5.3406 3.8666 13 6 7.1797 -6.1407 3.1306 14 6 7.3890 -7.4769 3.8461 15 6 8.4029 -8.2975 3.0913 16 1 8.8527 -7.9054 2.1911 17 6 8.7555 -9.5492 3.5495 18 7 8.2067 -10.0272 4.6448 19 14 10.0129 -10.5660 2.6142 20 1 10.4761 -9.8081 1.4242 21 1 11.1704 -10.8569 3.4978 22 1 9.3911 -11.8417 2.1767 23 6 6.1373 -3.9542 3.3463 24 6 4.1223 -3.0624 2.1405 25 8 3.8022 -3.8081 1.2390 26 1 -0.3633 0.4513 0.9232 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0709 30 1 1.5898 1.9162 -0.8525 31 1 1.7043 1.8724 0.9232 32 1 1.5090 -1.7406 1.1758 33 1 1.7975 -0.2247 2.0628 34 1 3.7024 -1.4966 0.0452 35 1 3.9909 0.0194 0.9323 36 1 5.5314 -0.7178 3.1987 37 1 3.8541 -0.3297 3.6843 38 1 3.6332 -2.3076 4.9592 39 1 5.4227 -2.1845 5.0383 40 1 3.7868 -4.5931 5.1186 41 1 2.9353 -4.7929 3.5513 42 1 4.6654 -6.2139 2.6639 43 1 4.6530 -6.7210 4.3825 44 1 6.8182 -6.3233 2.1186 45 1 8.1251 -5.6001 3.0867 46 1 7.7506 -7.2944 4.8580 47 1 6.4436 -8.0176 3.8900 48 1 8.4552 -10.9077 4.9673 49 1 6.4504 -3.9349 2.3024 50 1 6.7811 -3.3067 3.9414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:34 Heat of formation + Delta-G solvation = -45.041034 kcal Electronic energy + Delta-G solvation = -26308.510999 eV Core-core repulsion = 22755.534088 eV Total energy + Delta-G solvation = -3552.976911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22982 -39.37630 -38.47166 -37.42042 -35.71550 -34.32929 -32.33801 -30.51064 -29.87160 -28.90328 -28.50181 -26.68001 -25.59470 -24.21419 -23.38979 -22.62071 -21.77067 -21.48722 -19.93904 -18.58913 -17.86441 -17.43756 -16.78818 -16.59978 -16.42105 -16.26460 -15.98216 -15.66053 -15.51424 -15.26196 -14.97088 -14.54379 -14.36432 -14.24473 -13.99574 -13.74964 -13.65024 -13.33588 -13.30114 -13.01357 -12.99027 -12.74222 -12.64608 -12.62899 -12.53764 -12.43752 -12.39025 -12.01728 -11.87746 -11.75465 -11.72261 -11.35632 -11.20828 -10.72301 -10.56847 -9.80043 -9.41740 -9.36098 -8.21416 -6.32911 1.38377 1.39306 1.41078 1.52682 1.87578 2.39118 2.98405 3.09166 3.11466 3.31384 3.40651 3.51914 3.82623 3.89247 3.95251 4.05382 4.21485 4.26931 4.30777 4.36708 4.42157 4.44853 4.47351 4.52990 4.59655 4.64242 4.67015 4.71068 4.75720 4.80067 4.86898 4.89733 4.94687 4.96317 5.00984 5.04642 5.05421 5.15986 5.19785 5.42502 5.55461 5.59275 5.74879 5.94286 5.95954 5.99932 6.06753 6.07270 6.27262 6.83184 7.08696 7.35840 8.90905 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.002461 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.440025 B =11375.383865 C =11674.299146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.566 5.566 3 C 0.019 3.981 4 C 0.051 3.949 5 C 0.131 3.869 6 N -0.615 5.615 7 C 0.099 3.901 8 C -0.108 4.108 9 C -0.104 4.104 10 C -0.087 4.087 11 C 0.035 3.965 12 N -0.517 5.517 13 C 0.071 3.929 14 C 0.041 3.959 15 C -0.547 4.547 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.278 1.278 23 C 0.061 3.939 24 C 0.520 3.480 25 O -0.573 6.573 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.072 0.928 44 H 0.008 0.992 45 H 0.067 0.933 46 H 0.000 1.000 47 H -0.011 1.011 48 H 0.265 0.735 49 H 0.022 0.978 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 28.590 -2.020 31.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.290 5.290 3 C -0.128 4.128 4 C -0.078 4.078 5 C 0.009 3.991 6 N -0.348 5.348 7 C -0.022 4.022 8 C -0.146 4.146 9 C -0.108 4.108 10 C -0.125 4.125 11 C -0.093 4.093 12 N -0.241 5.241 13 C -0.057 4.057 14 C 0.004 3.996 15 C -0.585 4.585 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.204 1.204 23 C -0.067 4.067 24 C 0.308 3.692 25 O -0.452 6.452 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.090 0.910 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.019 0.981 47 H 0.007 0.993 48 H 0.073 0.927 49 H 0.041 0.959 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.523 27.909 -2.339 31.101 hybrid contribution 0.014 -0.980 -0.870 1.310 sum -13.510 26.929 -3.209 30.298 Atomic orbital electron populations 1.22391 0.86168 1.02248 1.01394 1.61868 1.09068 1.15271 1.42833 1.22528 1.01342 0.87499 1.01447 1.22326 0.95290 0.97873 0.92361 1.21345 0.93300 0.96846 0.87654 1.48486 1.61891 1.05844 1.18612 1.22530 1.01411 0.96649 0.81582 1.22776 1.06203 0.89350 0.96234 1.21540 0.96060 0.98891 0.94287 1.22318 0.96806 0.90909 1.02515 1.23229 0.88939 0.98481 0.98607 1.64969 1.04779 1.01929 1.52398 1.22148 0.94679 0.95197 0.93689 1.18831 0.94829 0.90874 0.95064 1.21633 1.24421 1.01991 1.10464 0.92582 1.25965 0.98667 0.99015 0.96012 1.70110 1.44567 1.18595 1.23619 0.85369 0.78540 0.78229 0.78706 1.18865 1.19838 1.20356 1.22779 0.94526 0.91173 0.98229 1.20881 0.76617 0.82943 0.88724 1.90703 1.52239 1.58772 1.43524 0.94808 0.90051 0.92236 0.90557 0.90509 0.94576 0.93077 0.92980 0.92153 0.87397 0.89094 0.87396 0.87878 0.86543 0.87240 0.91202 0.96336 0.90981 0.97384 0.91456 0.98144 0.99309 0.92661 0.95948 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 127.69 1.22 1.55 16 2 N -0.57 -8.63 5.02 -948.84 -4.76 -13.40 16 3 C 0.02 0.19 9.32 127.69 1.19 1.38 16 4 C 0.05 0.83 5.28 86.31 0.46 1.29 16 5 C 0.13 2.27 5.87 86.38 0.51 2.77 16 6 N -0.62 -11.78 2.94 -817.76 -2.41 -14.19 16 7 C 0.10 1.04 7.37 86.95 0.64 1.68 16 8 C -0.11 -1.38 6.11 31.44 0.19 -1.19 16 9 C -0.10 -2.51 0.77 -52.66 -0.04 -2.55 16 10 C -0.09 -2.36 6.02 31.54 0.19 -2.18 16 11 C 0.04 1.34 5.92 86.71 0.51 1.85 16 12 N -0.52 -19.91 5.26 -883.55 -4.64 -24.56 16 13 C 0.07 3.29 4.65 86.30 0.40 3.70 16 14 C 0.04 2.34 5.06 29.85 0.15 2.50 16 15 C -0.55 -32.80 9.11 25.60 0.23 -32.57 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 19 Si 0.97 45.86 29.54 68.60 2.03 47.88 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C 0.06 1.81 6.02 86.06 0.52 2.33 16 24 C 0.52 14.76 6.48 87.52 0.57 15.33 16 25 O -0.57 -22.38 17.44 -3.05 -0.05 -22.44 16 26 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 28 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 29 H 0.08 0.65 6.47 -2.39 -0.02 0.63 16 30 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 1.12 8.06 -2.39 -0.02 1.10 16 33 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 34 H 0.06 1.43 7.93 -2.39 -0.02 1.42 16 35 H 0.11 1.21 6.55 -2.39 -0.02 1.20 16 36 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 1.01 7.87 -2.39 -0.02 0.99 16 39 H 0.12 1.16 7.44 -2.39 -0.02 1.14 16 40 H 0.11 2.39 7.83 -2.39 -0.02 2.37 16 41 H 0.07 1.93 7.81 -2.39 -0.02 1.91 16 42 H 0.02 0.79 7.80 -2.39 -0.02 0.77 16 43 H 0.07 2.86 7.82 -2.39 -0.02 2.85 16 44 H 0.01 0.39 7.83 -2.38 -0.02 0.37 16 45 H 0.07 2.98 8.08 -2.39 -0.02 2.96 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 47 H -0.01 -0.70 7.38 -2.39 -0.02 -0.72 16 48 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.02 0.75 7.38 -2.38 -0.02 0.73 16 50 H 0.11 2.68 7.31 -2.39 -0.02 2.66 16 Total: -1.00 -78.82 390.64 -1.47 -80.29 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.88 Total: 7.85 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 7.21 Total: -3.56 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -11.53 Total: -110.03 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.82 -1.47 -80.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.252 kcal (2) G-P(sol) polarization free energy of solvation -78.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds