Wall clock time and date at job start Fri Apr 10 2020 18:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46880 * 180.02562 * 19 18 17 21 21 C 1.39000 * 119.99705 * 180.02562 * 20 19 18 22 22 C 1.39348 * 120.09432 * 359.97438 * 21 20 19 23 23 N 1.31911 * 119.88932 * 179.97438 * 22 21 20 24 24 C 1.32282 * 120.08951 * 359.97438 * 23 22 21 25 25 C 1.38161 * 120.18800 * 359.97438 * 24 23 22 26 26 N 1.32244 * 120.11000 * 359.78590 * 25 24 23 27 27 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 28 28 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 29 29 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 30 30 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 31 31 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 32 32 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 34 34 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 35 35 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 36 36 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 37 37 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 38 38 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 39 39 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 40 40 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 41 41 H 1.08996 * 109.46769 * 300.00011 * 19 18 17 42 42 H 1.08997 * 109.47063 * 59.99835 * 19 18 17 43 43 H 0.97003 * 120.00285 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.05445 * 359.95835 * 22 21 20 45 45 H 1.07998 * 119.90568 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.94031 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 7 8.0039 -4.1253 -3.7543 21 6 9.3177 -4.5758 -3.6985 22 6 10.0891 -4.3412 -2.5620 23 7 11.3353 -4.7710 -2.5131 24 6 11.8523 -5.4240 -3.5408 25 6 11.0903 -5.6594 -4.6689 26 7 9.8386 -5.2361 -4.7242 27 1 -0.3633 0.5899 -0.8415 28 1 -0.3633 -1.0237 -0.0902 29 1 -0.3633 0.4337 0.9316 30 1 3.0797 1.3443 -0.1083 31 1 1.5612 1.9273 -0.8310 32 1 2.9876 4.9176 0.7775 33 1 1.3932 -1.6630 -1.2815 34 1 1.9552 -0.1531 -2.0382 35 1 2.9842 -2.8273 0.2040 36 1 3.4165 -2.8115 -2.2453 37 1 3.9750 -1.2717 -2.9420 38 1 5.4714 -2.8432 -0.9473 39 1 5.4001 -3.9264 -3.1222 40 1 5.9579 -2.3862 -3.8184 41 1 8.0083 -2.4998 -2.4293 42 1 7.4512 -4.0400 -1.7326 43 1 7.4683 -4.2890 -4.5463 44 1 9.6674 -3.8083 -1.7226 45 1 12.8731 -5.7742 -3.4978 46 1 11.5163 -6.1933 -5.5054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335933475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:43 Heat of formation + Delta-G solvation = 12.072479 kcal Electronic energy + Delta-G solvation = -24329.386574 eV Core-core repulsion = 20675.345947 eV Total energy + Delta-G solvation = -3654.040627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25170 -38.46130 -37.32333 -35.86840 -34.92203 -34.14751 -32.47866 -31.26836 -29.85132 -27.98430 -27.24421 -25.46874 -24.94203 -23.67258 -23.07050 -22.30924 -21.48435 -20.07764 -18.26702 -17.72492 -16.86891 -16.77891 -16.33862 -16.14931 -15.58649 -15.34964 -15.09948 -14.90982 -14.65387 -14.63241 -14.16025 -13.91190 -13.56855 -13.25672 -12.95238 -12.80345 -12.42705 -12.06618 -11.95127 -11.80460 -11.78411 -11.56245 -11.41013 -11.15154 -10.94866 -10.74490 -10.60716 -10.51319 -10.38394 -9.77006 -9.68209 -9.38597 -9.13740 -8.64914 -8.40000 -8.26364 -7.21629 -6.00095 -4.00610 0.66342 0.99517 2.49281 3.34893 3.40538 3.43895 3.52083 3.90309 4.10451 4.12556 4.25357 4.45116 4.48214 4.62541 4.72150 4.88421 4.91966 4.92865 5.03239 5.19296 5.20440 5.31415 5.37170 5.40263 5.48062 5.54801 5.66553 5.73140 5.93952 6.01117 6.05841 6.32542 6.33304 6.47380 6.69119 6.73948 6.98775 7.17252 7.21344 7.28250 7.31647 7.64166 7.81240 8.02138 8.10563 8.20928 8.56470 9.06509 9.63222 11.10977 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.001941 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.419755 B =14420.309313 C =15257.198612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.113 0.887 15 O -0.541 6.541 16 C 0.032 3.968 17 N -0.678 5.678 18 C 0.050 3.950 19 C 0.123 3.877 20 N -0.713 5.713 21 C 0.359 3.641 22 C -0.007 4.007 23 N -0.403 5.403 24 C -0.028 4.028 25 C 0.104 3.896 26 N -0.508 5.508 27 H 0.011 0.989 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.032 0.968 31 H -0.011 1.011 32 H 0.261 0.739 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.359 0.641 36 H 0.030 0.970 37 H 0.080 0.920 38 H 0.351 0.649 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.406 0.594 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.844 -20.144 -11.599 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.131 0.869 15 O -0.343 6.343 16 C -0.098 4.098 17 N -0.311 5.311 18 C -0.080 4.080 19 C -0.001 4.001 20 N -0.346 5.346 21 C 0.119 3.881 22 C -0.176 4.176 23 N -0.116 5.116 24 C -0.188 4.188 25 C -0.057 4.057 26 N -0.232 5.232 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.204 0.796 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.242 0.758 44 H 0.183 0.817 45 H 0.182 0.818 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 11.647 -18.991 -10.980 24.837 hybrid contribution -1.495 -0.352 -0.618 1.655 sum 10.153 -19.343 -11.598 24.734 Atomic orbital electron populations 1.22192 0.88853 0.98518 1.01192 1.62042 1.06500 1.17921 1.39052 1.19791 0.95538 0.81368 0.96561 1.21147 1.34681 0.96817 1.01671 0.91912 1.24993 0.95357 0.97390 0.96980 1.69955 1.38484 1.11457 1.34021 0.86491 0.78845 0.78321 0.83702 1.20578 1.21401 1.19929 1.22670 0.95826 0.98090 0.93814 1.21993 0.95296 0.93600 0.83534 0.86946 1.86713 1.73792 1.34372 1.39427 1.22691 0.87690 0.99121 1.00341 1.60182 1.18925 1.47124 1.04908 1.22016 0.93113 0.97088 0.95757 1.21434 0.94340 0.96462 0.87910 1.44388 1.09334 1.60537 1.20318 1.19371 0.87036 0.90665 0.91042 1.23177 0.91264 1.04679 0.98496 1.68234 1.10950 1.04940 1.27486 1.23346 1.02132 1.01928 0.91360 1.23445 0.88860 0.94964 0.98398 1.67942 1.13858 1.13697 1.27679 0.97031 0.93999 0.90911 0.95007 0.99366 0.92974 0.92337 0.94912 0.79646 0.95174 0.90135 0.82925 0.94690 0.90214 0.90118 0.91375 0.75777 0.81700 0.81808 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.31 60.07 0.56 1.34 16 2 N -0.53 -11.24 4.59 -244.37 -1.12 -12.36 16 3 C 0.19 5.00 4.55 -4.98 -0.02 4.97 16 4 C -0.50 -14.32 8.58 -34.44 -0.30 -14.62 16 5 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.03 0.43 4.65 -3.82 -0.02 0.41 16 13 C 0.12 1.76 3.31 -26.73 -0.09 1.67 16 14 H 0.11 2.14 6.73 -51.93 -0.35 1.79 16 15 O -0.54 -8.25 12.58 -35.23 -0.44 -8.70 16 16 C 0.03 0.35 5.39 -3.82 -0.02 0.33 16 17 N -0.68 -6.96 6.50 -113.78 -0.74 -7.70 16 18 C 0.05 0.39 5.80 -3.83 -0.02 0.36 16 19 C 0.12 0.88 5.16 -4.04 -0.02 0.86 16 20 N -0.71 -5.53 5.73 -60.30 -0.35 -5.87 16 21 C 0.36 3.44 7.67 -154.73 -1.19 2.26 16 22 C -0.01 -0.07 10.49 -17.10 -0.18 -0.25 16 23 N -0.40 -4.20 10.49 -12.88 -0.14 -4.33 16 24 C -0.03 -0.22 11.21 -17.39 -0.19 -0.42 16 25 C 0.10 0.79 11.21 -17.40 -0.20 0.60 16 26 N -0.51 -5.01 10.53 -12.24 -0.13 -5.14 16 27 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 28 H 0.04 0.66 7.85 -51.93 -0.41 0.25 16 29 H 0.07 1.49 7.01 -51.93 -0.36 1.13 16 30 H 0.03 0.88 6.60 -51.93 -0.34 0.54 16 31 H -0.01 -0.32 8.07 -51.92 -0.42 -0.74 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 35 H 0.36 3.99 9.05 45.56 0.41 4.41 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.35 3.50 8.12 -39.29 -0.32 3.18 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.64 7.94 -51.93 -0.41 0.23 16 42 H 0.07 0.45 7.94 -51.93 -0.41 0.04 16 43 H 0.41 2.83 8.60 -40.82 -0.35 2.48 16 44 H 0.17 1.35 6.73 -52.49 -0.35 0.99 16 45 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -33.77 379.93 -9.86 -43.62 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.60 Total: 5.04 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.78 Total: -1.03 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -1.73 Total: -61.56 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.44 Total: -8.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.77 -9.86 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335933475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.697 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds