Wall clock time and date at job start Fri Apr 10 2020 18:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46880 * 180.02562 * 19 18 17 21 21 C 1.39000 * 119.99705 * 180.02562 * 20 19 18 22 22 C 1.39348 * 120.09432 * 359.97438 * 21 20 19 23 23 N 1.31911 * 119.88932 * 179.97438 * 22 21 20 24 24 C 1.32282 * 120.08951 * 359.97438 * 23 22 21 25 25 C 1.38161 * 120.18800 * 359.97438 * 24 23 22 26 26 N 1.32244 * 120.11000 * 359.78590 * 25 24 23 27 27 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 28 28 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 29 29 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 30 30 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 31 31 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 32 32 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 34 34 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 35 35 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 36 36 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 37 37 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 38 38 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 39 39 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 40 40 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 41 41 H 1.08996 * 109.46769 * 300.00011 * 19 18 17 42 42 H 1.08997 * 109.47063 * 59.99835 * 19 18 17 43 43 H 0.97003 * 120.00285 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.05445 * 359.95835 * 22 21 20 45 45 H 1.07998 * 119.90568 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.94031 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 7 8.0039 -4.1253 -3.7543 21 6 9.3177 -4.5758 -3.6985 22 6 10.0891 -4.3412 -2.5620 23 7 11.3353 -4.7710 -2.5131 24 6 11.8523 -5.4240 -3.5408 25 6 11.0903 -5.6594 -4.6689 26 7 9.8386 -5.2361 -4.7242 27 1 -0.3633 0.5899 -0.8415 28 1 -0.3633 -1.0237 -0.0902 29 1 -0.3633 0.4337 0.9316 30 1 3.0797 1.3443 -0.1083 31 1 1.5612 1.9273 -0.8310 32 1 2.9876 4.9176 0.7775 33 1 1.3932 -1.6630 -1.2815 34 1 1.9552 -0.1531 -2.0382 35 1 2.9842 -2.8273 0.2040 36 1 3.4165 -2.8115 -2.2453 37 1 3.9750 -1.2717 -2.9420 38 1 5.4714 -2.8432 -0.9473 39 1 5.4001 -3.9264 -3.1222 40 1 5.9579 -2.3862 -3.8184 41 1 8.0083 -2.4998 -2.4293 42 1 7.4512 -4.0400 -1.7326 43 1 7.4683 -4.2890 -4.5463 44 1 9.6674 -3.8083 -1.7226 45 1 12.8731 -5.7742 -3.4978 46 1 11.5163 -6.1933 -5.5054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335933475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:42 Heat of formation + Delta-G solvation = -17.708049 kcal Electronic energy + Delta-G solvation = -24330.677954 eV Core-core repulsion = 20675.345947 eV Total energy + Delta-G solvation = -3655.332008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88869 -39.62996 -38.18471 -37.19842 -35.85326 -34.84648 -34.59807 -32.09141 -30.85321 -29.40864 -28.71503 -26.64008 -25.75845 -25.11652 -24.00748 -22.98183 -22.71141 -21.67785 -18.92883 -18.61267 -18.35529 -17.59139 -17.43932 -17.28458 -16.66630 -16.38673 -16.24131 -16.04025 -15.77433 -15.61382 -15.29231 -15.07709 -14.75445 -14.61832 -14.01449 -13.84498 -13.60162 -13.52881 -13.12108 -12.93743 -12.76922 -12.55537 -12.53669 -12.49380 -12.48154 -12.31683 -12.24766 -12.12537 -11.51848 -11.32684 -11.13060 -10.76577 -10.59788 -10.03718 -9.40725 -8.93975 -8.87844 -8.19743 -6.29091 0.03909 0.33057 1.40418 1.42849 1.53174 1.86633 2.40868 2.87931 3.00996 3.13029 3.44649 3.52217 3.55940 3.65026 3.72049 3.85533 3.98551 4.12113 4.18071 4.31698 4.36485 4.40430 4.44133 4.44780 4.59466 4.62614 4.63448 4.78846 4.80634 4.82731 4.88962 5.08744 5.14053 5.26960 5.32313 5.37524 5.65699 5.70671 5.95160 6.08017 6.35470 6.38581 6.41686 6.58378 6.66608 6.87006 7.01025 7.07912 7.40250 8.91299 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.001941 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.419755 B =14420.309313 C =15257.198612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.025 3.975 13 C 0.125 3.875 14 H 0.063 0.937 15 O -0.558 6.558 16 C 0.046 3.954 17 N -0.695 5.695 18 C 0.058 3.942 19 C 0.130 3.870 20 N -0.707 5.707 21 C 0.347 3.653 22 C -0.025 4.025 23 N -0.430 5.430 24 C -0.032 4.032 25 C 0.106 3.894 26 N -0.529 5.529 27 H 0.007 0.993 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.004 0.996 31 H -0.041 1.041 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.027 0.973 35 H 0.379 0.621 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.353 0.647 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.410 0.590 44 H 0.171 0.829 45 H 0.193 0.807 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -22.129 -11.831 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.188 1.188 12 C -0.104 4.104 13 C 0.064 3.936 14 H 0.081 0.919 15 O -0.363 6.363 16 C -0.084 4.084 17 N -0.328 5.328 18 C -0.071 4.071 19 C 0.006 3.994 20 N -0.340 5.340 21 C 0.108 3.892 22 C -0.193 4.193 23 N -0.144 5.144 24 C -0.192 4.192 25 C -0.055 4.055 26 N -0.253 5.253 27 H 0.025 0.975 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.022 0.978 31 H -0.024 1.024 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.046 0.954 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.173 0.827 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.247 0.753 44 H 0.188 0.812 45 H 0.210 0.790 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.304 -21.003 -11.217 26.358 hybrid contribution -1.344 0.170 -0.601 1.482 sum 9.960 -20.833 -11.818 25.940 Atomic orbital electron populations 1.22215 0.87508 1.00899 0.99972 1.61932 1.07832 1.15085 1.41736 1.19388 0.93757 0.83910 0.94623 1.21489 1.34688 0.97436 1.02499 0.92108 1.25933 0.95117 0.98159 1.00708 1.70084 1.39439 1.11869 1.36120 0.85387 0.78944 0.77248 0.79063 1.20022 1.20704 1.18776 1.22819 0.97126 0.98633 0.91827 1.21696 0.93913 0.92744 0.85209 0.91897 1.86662 1.74466 1.35467 1.39741 1.22443 0.88485 0.99619 0.97841 1.60103 1.18579 1.48216 1.05925 1.21948 0.93215 0.97354 0.94598 1.21336 0.93901 0.96147 0.88052 1.44333 1.08896 1.60260 1.20530 1.19486 0.87578 0.91013 0.91139 1.23281 0.91498 1.05512 0.99029 1.68220 1.11421 1.05924 1.28872 1.23877 1.03380 1.01086 0.90869 1.24050 0.88086 0.94081 0.99251 1.68000 1.15027 1.14301 1.27936 0.97479 0.89764 0.92877 0.97781 1.02379 0.92760 0.88389 0.95443 0.77287 0.92265 0.90372 0.82715 0.93099 0.90384 0.91151 0.90707 0.75303 0.81226 0.79006 0.78059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.31 127.69 1.19 2.76 16 2 N -0.54 -22.96 4.59 -927.06 -4.25 -27.21 16 3 C 0.21 11.33 4.55 85.56 0.39 11.72 16 4 C -0.52 -30.39 8.58 25.60 0.22 -30.17 16 5 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 6 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 7 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 8 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 12 C 0.03 0.80 4.65 86.30 0.40 1.20 16 13 C 0.12 3.77 3.31 30.59 0.10 3.87 16 14 H 0.06 2.54 6.73 -2.39 -0.02 2.53 16 15 O -0.56 -16.49 12.58 -148.98 -1.87 -18.36 16 16 C 0.05 0.96 5.39 86.30 0.47 1.43 16 17 N -0.69 -13.60 6.50 -513.89 -3.34 -16.94 16 18 C 0.06 0.81 5.80 86.31 0.50 1.31 16 19 C 0.13 1.78 5.16 86.38 0.45 2.23 16 20 N -0.71 -10.46 5.73 -344.69 -1.97 -12.43 16 21 C 0.35 6.51 7.67 133.04 1.02 7.53 16 22 C -0.03 -0.49 10.49 84.95 0.89 0.40 16 23 N -0.43 -8.82 10.49 -194.66 -2.04 -10.86 16 24 C -0.03 -0.46 11.21 84.61 0.95 0.48 16 25 C 0.11 1.43 11.21 84.61 0.95 2.38 16 26 N -0.53 -9.87 10.53 -192.64 -2.03 -11.90 16 27 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 28 H 0.08 2.41 7.85 -2.39 -0.02 2.39 16 29 H 0.05 2.16 7.01 -2.39 -0.02 2.14 16 30 H 0.00 0.24 6.60 -2.39 -0.02 0.23 16 31 H -0.04 -2.43 8.07 -2.38 -0.02 -2.45 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.10 2.37 7.75 -2.39 -0.02 2.35 16 34 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 35 H 0.38 7.49 9.05 -74.06 -0.67 6.82 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.35 6.66 8.12 -89.69 -0.73 5.94 16 39 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.12 7.94 -2.39 -0.02 1.10 16 42 H 0.07 0.94 7.94 -2.39 -0.02 0.92 16 43 H 0.41 5.29 8.60 -92.71 -0.80 4.49 16 44 H 0.17 2.87 6.73 -2.91 -0.02 2.85 16 45 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 46 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -75.43 379.93 -6.41 -81.84 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -1.19 Total: 20.09 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 7.98 Total: 5.52 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -13.35 Total: -136.42 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.87 Total: -18.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.43 -6.41 -81.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335933475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.133 kcal (2) G-P(sol) polarization free energy of solvation -75.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds