Wall clock time and date at job start Fri Apr 10 2020 18:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 110.99720 * 2 1 4 4 C 1.50692 * 109.47281 * 293.95034 * 3 2 1 5 5 H 1.08001 * 120.00537 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99951 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99814 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99874 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46958 * 90.00543 * 8 6 4 10 10 H 1.48503 * 109.47063 * 210.00348 * 8 6 4 11 11 H 1.48496 * 109.47318 * 330.00421 * 8 6 4 12 12 C 1.46897 * 110.99785 * 123.95602 * 2 1 3 13 13 C 1.53006 * 109.46930 * 164.01121 * 12 2 1 14 14 H 1.09001 * 109.46989 * 58.50953 * 13 12 2 15 15 O 1.42898 * 109.47316 * 298.50857 * 13 12 2 16 16 C 1.52998 * 109.47103 * 178.50791 * 13 12 2 17 17 N 1.46898 * 109.47351 * 185.00004 * 16 13 12 18 18 C 1.46893 * 111.00348 * 179.97438 * 17 16 13 19 19 C 1.53003 * 109.47387 * 180.02562 * 18 17 16 20 20 N 1.46493 * 109.47214 * 180.02562 * 19 18 17 21 21 C 1.38408 * 120.00193 * 179.97438 * 20 19 18 22 22 N 1.32492 * 119.21335 * 359.72858 * 21 20 19 23 23 C 1.32277 * 120.73742 * 179.75911 * 22 21 20 24 24 C 1.38604 * 119.20096 * 0.50518 * 23 22 21 25 25 C 1.38606 * 118.55337 * 359.75006 * 24 23 22 26 26 N 1.32274 * 119.20258 * 359.97438 * 25 24 23 27 27 H 1.08993 * 109.47399 * 301.53264 * 1 2 3 28 28 H 1.09011 * 109.47248 * 61.53175 * 1 2 3 29 29 H 1.09005 * 109.47032 * 181.52787 * 1 2 3 30 30 H 1.08996 * 109.47001 * 53.95543 * 3 2 1 31 31 H 1.09001 * 109.46512 * 173.95442 * 3 2 1 32 32 H 0.97004 * 119.99667 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47378 * 44.01346 * 12 2 1 34 34 H 1.09006 * 109.47222 * 284.00711 * 12 2 1 35 35 H 0.96699 * 113.99491 * 300.00368 * 15 13 12 36 36 H 1.08999 * 109.47398 * 64.99969 * 16 13 12 37 37 H 1.09009 * 109.47252 * 304.99874 * 16 13 12 38 38 H 1.00899 * 110.99762 * 303.96054 * 17 16 13 39 39 H 1.09001 * 109.46995 * 60.00464 * 18 17 16 40 40 H 1.09001 * 109.47445 * 299.99986 * 18 17 16 41 41 H 1.08993 * 109.46988 * 59.99955 * 19 18 17 42 42 H 1.09001 * 109.46739 * 300.00324 * 19 18 17 43 43 H 0.96997 * 120.00401 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.40414 * 180.27547 * 23 22 21 45 45 H 1.07994 * 120.72340 * 179.77348 * 24 23 22 46 46 H 1.07998 * 120.39948 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0267 3.3496 -1.5284 7 7 2.7118 4.0020 -0.6148 8 14 1.5818 4.1873 -3.1376 9 1 0.2694 4.8674 -2.9953 10 1 2.6238 5.1888 -3.4790 11 1 1.4985 3.1718 -4.2179 12 6 1.9953 -0.7660 1.1375 13 6 3.4728 -1.0840 0.8983 14 1 4.0281 -0.1549 0.7697 15 8 3.6034 -1.8838 -0.2786 16 6 4.0307 -1.8496 2.0998 17 7 5.4753 -2.0503 1.9247 18 6 6.0467 -2.7832 3.0622 19 6 7.5494 -2.9719 2.8444 20 7 8.1191 -3.7035 3.9786 21 6 9.4720 -3.9947 4.0051 22 7 10.2363 -3.6092 2.9939 23 6 11.5336 -3.8674 2.9903 24 6 12.0885 -4.5587 4.0558 25 6 11.2591 -4.9516 5.0946 26 7 9.9709 -4.6566 5.0387 27 1 -0.3634 0.5374 0.8758 28 1 -0.3634 0.4899 -0.9035 29 1 -0.3633 -1.0274 0.0274 30 1 1.5610 1.9273 0.8309 31 1 3.0796 1.3444 0.1082 32 1 2.9864 4.9181 -0.7768 33 1 1.4356 -1.6956 1.2398 34 1 1.8933 -0.1782 2.0498 35 1 3.1333 -2.7277 -0.2347 36 1 3.5359 -2.8178 2.1753 37 1 3.8511 -1.2778 3.0103 38 1 5.6720 -2.5218 1.0546 39 1 5.5660 -3.7580 3.1447 40 1 5.8811 -2.2176 3.9791 41 1 8.0298 -1.9971 2.7621 42 1 7.7154 -3.5374 1.9274 43 1 7.5483 -3.9838 4.7110 44 1 12.1525 -3.5468 2.1652 45 1 13.1441 -4.7859 4.0765 46 1 11.6600 -5.4914 5.9397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356532075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:44 Heat of formation + Delta-G solvation = -11.687941 kcal Electronic energy + Delta-G solvation = -24350.189266 eV Core-core repulsion = 20695.118310 eV Total energy + Delta-G solvation = -3655.070956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78235 -39.63977 -38.08324 -37.11172 -35.68819 -34.59694 -34.56182 -32.39471 -31.08171 -29.44132 -28.78397 -26.61461 -25.55402 -25.07296 -23.91478 -23.01710 -22.74383 -21.64649 -19.14946 -18.62410 -18.37335 -17.55543 -17.31940 -16.68002 -16.58815 -16.43022 -16.21420 -16.03439 -15.77087 -15.59269 -15.24401 -15.06416 -14.72246 -14.49868 -14.21547 -13.99359 -13.75202 -13.61127 -13.11310 -12.88339 -12.62625 -12.59345 -12.56055 -12.49902 -12.29458 -12.14640 -11.87074 -11.80537 -11.48927 -11.32525 -11.30613 -10.76677 -10.59620 -10.05934 -9.42126 -9.07684 -8.94348 -8.19354 -6.28792 0.27854 0.30267 1.39951 1.42394 1.54013 1.80999 2.41057 2.98605 2.99657 3.13179 3.32528 3.47802 3.71832 3.83522 3.89371 3.93746 3.98301 4.13766 4.18964 4.34634 4.41369 4.44605 4.46423 4.52819 4.59895 4.63128 4.78569 4.79761 4.88731 4.91947 4.94856 5.08677 5.14006 5.26967 5.32850 5.42299 5.65680 5.81377 5.96137 6.08230 6.17307 6.35768 6.38403 6.49259 6.66341 6.87227 7.07271 7.38440 7.40382 8.91783 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.020114 B = 0.001979 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.726651 B =14142.203656 C =15071.839162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.026 3.974 13 C 0.122 3.878 14 H 0.063 0.937 15 O -0.559 6.559 16 C 0.047 3.953 17 N -0.697 5.697 18 C 0.059 3.941 19 C 0.152 3.848 20 N -0.696 5.696 21 C 0.541 3.459 22 N -0.596 5.596 23 C 0.175 3.825 24 C -0.283 4.283 25 C 0.179 3.821 26 N -0.596 5.596 27 H 0.007 0.993 28 H 0.054 0.946 29 H 0.084 0.916 30 H -0.042 1.042 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.099 0.901 34 H 0.027 0.973 35 H 0.380 0.620 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.351 0.649 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.418 0.582 44 H 0.191 0.809 45 H 0.178 0.822 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.803 -21.656 12.033 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.190 1.190 12 C -0.103 4.103 13 C 0.062 3.938 14 H 0.082 0.918 15 O -0.365 6.365 16 C -0.083 4.083 17 N -0.330 5.330 18 C -0.070 4.070 19 C 0.027 3.973 20 N -0.334 5.334 21 C 0.184 3.816 22 N -0.320 5.320 23 C 0.009 3.991 24 C -0.308 4.308 25 C 0.012 3.988 26 N -0.319 5.319 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.102 0.898 30 H -0.025 1.025 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.045 0.955 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.170 0.830 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.256 0.744 44 H 0.208 0.792 45 H 0.195 0.805 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.477 -20.285 11.502 26.933 hybrid contribution -0.360 -0.132 0.451 0.592 sum 13.117 -20.418 11.952 27.052 Atomic orbital electron populations 1.22221 0.87485 1.01153 0.99846 1.61940 1.07854 1.15109 1.41690 1.19383 0.93824 0.83910 0.94609 1.21487 1.34661 0.97422 1.02523 0.92080 1.25950 0.95099 0.98175 1.00775 1.70093 1.39415 1.11816 1.36231 0.85374 0.77971 0.78050 0.79170 1.19622 1.20759 1.19031 1.22793 0.96716 0.98893 0.91860 1.21728 0.93750 0.93626 0.84668 0.91846 1.86662 1.75735 1.34528 1.39555 1.22469 0.87609 0.99868 0.98364 1.60115 1.13017 1.54360 1.05521 1.21979 0.92730 0.97349 0.94985 1.20976 0.92687 0.95788 0.87867 1.43950 1.03275 1.61045 1.25130 1.19566 0.87628 0.88248 0.86154 1.67989 1.08322 1.27548 1.28177 1.23566 0.89123 0.88853 0.97567 1.22909 1.04377 1.06291 0.97271 1.23590 0.86708 0.90710 0.97751 1.67935 1.17492 1.19956 1.26509 0.97400 0.92761 0.89783 1.02471 0.97717 0.92766 0.88280 0.95463 0.77249 0.92148 0.90173 0.82971 0.93001 0.90205 0.92539 0.92161 0.74392 0.79186 0.80454 0.78474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.32 127.69 1.19 2.75 16 2 N -0.54 -23.49 4.60 -927.06 -4.27 -27.75 16 3 C 0.21 11.51 4.57 85.55 0.39 11.90 16 4 C -0.52 -30.78 8.54 25.60 0.22 -30.56 16 5 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 6 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 7 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 8 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.03 0.88 4.63 86.31 0.40 1.28 16 13 C 0.12 3.93 3.23 30.60 0.10 4.03 16 14 H 0.06 2.70 6.55 -2.39 -0.02 2.68 16 15 O -0.56 -17.76 12.75 -148.98 -1.90 -19.66 16 16 C 0.05 1.08 5.36 86.30 0.46 1.54 16 17 N -0.70 -16.19 6.50 -513.89 -3.34 -19.53 16 18 C 0.06 1.05 5.80 86.31 0.50 1.55 16 19 C 0.15 3.06 5.91 86.38 0.51 3.57 16 20 N -0.70 -13.67 5.70 -351.05 -2.00 -15.67 16 21 C 0.54 12.28 8.43 261.48 2.20 14.48 16 22 N -0.60 -13.47 9.59 -197.98 -1.90 -15.37 16 23 C 0.18 2.68 11.30 84.71 0.96 3.63 16 24 C -0.28 -3.09 10.16 22.45 0.23 -2.86 16 25 C 0.18 2.39 11.30 84.71 0.96 3.35 16 26 N -0.60 -12.15 10.46 -197.98 -2.07 -14.22 16 27 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 28 H 0.05 2.25 6.90 -2.38 -0.02 2.23 16 29 H 0.08 2.47 7.97 -2.38 -0.02 2.46 16 30 H -0.04 -2.52 8.11 -2.39 -0.02 -2.54 16 31 H 0.00 0.29 6.38 -2.39 -0.02 0.27 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.10 2.51 7.88 -2.39 -0.02 2.49 16 34 H 0.03 0.94 8.05 -2.38 -0.02 0.92 16 35 H 0.38 8.28 9.04 -74.06 -0.67 7.61 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.35 8.15 8.29 -89.69 -0.74 7.41 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.42 6.77 8.59 -92.71 -0.80 5.97 16 44 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 45 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 46 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -77.90 382.07 -5.80 -83.70 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -1.21 Total: 23.53 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 8.58 Total: 14.99 kcal Atomic # 7 Polarization: -137.09 SS G_CDS: -13.29 Total: -150.38 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.90 Total: -19.66 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -77.90 -5.80 -83.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356532075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.009 kcal (2) G-P(sol) polarization free energy of solvation -77.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds