Wall clock time and date at job start Fri Apr 10 2020 18:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.00818 * 2 1 4 4 C 1.54318 * 109.88828 * 121.11626 * 2 1 3 5 5 C 1.55135 * 103.02066 * 141.69101 * 4 2 1 6 6 C 1.54914 * 101.65215 * 324.34470 * 5 4 2 7 7 H 1.09001 * 110.37024 * 278.24559 * 6 5 4 8 8 C 1.52997 * 110.37234 * 155.90245 * 6 5 4 9 9 N 1.47438 * 109.88768 * 238.88236 * 2 1 3 10 10 C 1.46905 * 111.00188 * 3.85711 * 9 2 1 11 11 C 1.50693 * 109.47036 * 167.80329 * 10 9 2 12 12 O 1.21274 * 120.00424 * 342.35034 * 11 10 9 13 13 N 1.34778 * 120.00021 * 162.35937 * 11 10 9 14 14 C 1.46503 * 120.00308 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46998 * 179.97438 * 14 13 11 16 16 H 1.08995 * 112.84772 * 43.80806 * 15 14 13 17 17 C 1.53781 * 113.60949 * 175.00193 * 15 14 13 18 18 C 1.53777 * 87.07948 * 139.98111 * 17 15 14 19 19 H 1.09002 * 113.61670 * 219.92951 * 18 17 15 20 20 N 1.46502 * 113.61584 * 89.11531 * 18 17 15 21 21 C 1.36933 * 120.00245 * 155.00080 * 20 18 17 22 22 H 1.08003 * 119.99712 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99980 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00256 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99865 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47027 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.46956 * 60.00035 * 25 23 21 28 28 H 1.48504 * 109.47173 * 300.00111 * 25 23 21 29 29 C 1.53780 * 87.08279 * 334.56370 * 18 17 15 30 30 H 1.08998 * 109.47549 * 175.42218 * 1 2 3 31 31 H 1.09001 * 109.47368 * 295.41865 * 1 2 3 32 32 H 1.09003 * 109.47585 * 55.41504 * 1 2 3 33 33 H 1.09004 * 110.70821 * 23.30087 * 4 2 1 34 34 H 1.09000 * 110.70496 * 260.07483 * 4 2 1 35 35 H 1.09007 * 110.99017 * 206.25628 * 5 4 2 36 36 H 1.09001 * 111.02622 * 82.45172 * 5 4 2 37 37 H 1.09009 * 109.46791 * 291.60776 * 8 6 5 38 38 H 1.08999 * 109.47268 * 51.61203 * 8 6 5 39 39 H 1.08996 * 109.46639 * 171.61847 * 8 6 5 40 40 H 1.08998 * 109.47150 * 47.79895 * 10 9 2 41 41 H 1.09005 * 109.46537 * 287.79992 * 10 9 2 42 42 H 0.97004 * 119.99559 * 359.97438 * 13 11 10 43 43 H 1.09002 * 109.46871 * 59.99834 * 14 13 11 44 44 H 1.08996 * 109.46697 * 299.99879 * 14 13 11 45 45 H 1.09002 * 113.61787 * 25.43086 * 17 15 14 46 46 H 1.09001 * 113.68621 * 254.53923 * 17 15 14 47 47 H 0.97005 * 119.99778 * 334.99682 * 20 18 17 48 48 H 0.96994 * 119.99905 * 359.97438 * 24 23 21 49 49 H 1.08999 * 113.61400 * 139.97542 * 29 18 17 50 50 H 1.08995 * 113.61546 * 270.88635 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7499 1.2424 5 6 3.2891 -1.5134 0.6941 6 6 2.8189 -1.8833 -0.7348 7 1 2.1938 -2.7760 -0.7094 8 6 4.0236 -2.1010 -1.6524 9 7 2.0315 -0.7165 -1.1870 10 6 0.9239 -1.1340 -2.0570 11 6 1.4721 -1.5882 -3.3851 12 8 2.5975 -1.2787 -3.7145 13 7 0.7117 -2.3381 -4.2072 14 6 1.2444 -2.7793 -5.4987 15 6 0.1874 -3.6095 -6.2296 16 1 -0.8083 -3.1694 -6.1755 17 6 0.6026 -4.0208 -7.6521 18 6 -0.0410 -5.3866 -7.3603 19 1 0.5269 -6.2298 -7.7536 20 7 -1.4640 -5.4500 -7.7026 21 6 -2.0456 -6.6554 -7.9922 22 1 -1.4550 -7.5594 -7.9686 23 6 -3.3940 -6.7155 -8.3161 24 7 -4.1138 -5.6140 -8.3443 25 14 -4.1871 -8.3599 -8.7118 26 1 -5.6247 -8.1541 -9.0220 27 1 -4.0583 -9.2658 -7.5422 28 1 -3.5090 -8.9669 -9.8852 29 6 0.2226 -5.1047 -5.8717 30 1 -0.3634 -1.0243 -0.0820 31 1 -0.3634 0.4411 0.9282 32 1 -0.3634 0.5833 -0.8461 33 1 1.3055 -1.4471 1.6170 34 1 2.3513 -0.0465 2.0204 35 1 3.4881 -2.4085 1.2836 36 1 4.1661 -0.8670 0.6615 37 1 4.5308 -1.1504 -1.8178 38 1 4.7133 -2.8044 -1.1858 39 1 3.6850 -2.5031 -2.6072 40 1 0.2467 -0.2939 -2.2115 41 1 0.3827 -1.9553 -1.5872 42 1 -0.1884 -2.5858 -3.9436 43 1 2.1346 -3.3869 -5.3360 44 1 1.5038 -1.9087 -6.1011 45 1 1.6821 -4.0684 -7.7953 46 1 0.0959 -3.4580 -8.4361 47 1 -1.9943 -4.6380 -7.7241 48 1 -3.7021 -4.7602 -8.1384 49 1 -0.5917 -5.4162 -5.2175 50 1 1.1981 -5.4485 -5.5282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691184394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:03 Heat of formation + Delta-G solvation = 2.838533 kcal Electronic energy + Delta-G solvation = -26049.268587 eV Core-core repulsion = 22498.367890 eV Total energy + Delta-G solvation = -3550.900698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53279 -39.21344 -38.30962 -34.70919 -33.56282 -33.18562 -32.30222 -30.05782 -28.51337 -27.88234 -25.95836 -25.15391 -24.13049 -23.47208 -21.88407 -21.23372 -20.79720 -19.42622 -18.59368 -17.61515 -17.21077 -16.49324 -15.97450 -15.74560 -15.44160 -15.06630 -14.69488 -14.35462 -14.03412 -13.79270 -13.58874 -13.50038 -13.22099 -13.01133 -12.88776 -12.82950 -12.42022 -12.20827 -12.05232 -11.95817 -11.58576 -11.53854 -11.43960 -11.04911 -10.98129 -10.95874 -10.78379 -10.63565 -10.37439 -10.13191 -9.99312 -9.75183 -9.58939 -9.19062 -8.95124 -8.88585 -8.55204 -7.10523 -6.16413 -3.16786 2.65825 3.04799 3.48761 3.51960 3.69530 3.71543 4.25614 4.32151 4.49698 4.61601 4.75615 4.85063 4.88215 4.97320 4.97892 5.02018 5.06821 5.10406 5.14459 5.16796 5.27507 5.43406 5.44395 5.52813 5.53041 5.57584 5.58392 5.65845 5.71531 5.79723 5.81400 5.90347 5.95774 5.97453 6.05981 6.12479 6.25947 6.33999 6.46154 6.52685 6.63214 6.71700 6.78302 6.79675 6.92532 7.55791 7.77660 8.29845 8.69190 9.16285 10.02446 10.16967 11.31629 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.002384 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.435632 B =11741.017664 C =12198.910442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.125 4.125 6 C 0.070 3.930 7 H 0.049 0.951 8 C -0.134 4.134 9 N -0.502 5.502 10 C 0.028 3.972 11 C 0.504 3.496 12 O -0.517 6.517 13 N -0.729 5.729 14 C 0.134 3.866 15 C -0.119 4.119 16 H 0.090 0.910 17 C -0.149 4.149 18 C 0.172 3.828 19 H 0.063 0.937 20 N -0.717 5.717 21 C -0.334 4.334 22 H 0.066 0.934 23 C -0.045 4.045 24 N -0.943 5.943 25 Si 1.081 2.919 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.294 1.294 29 C -0.167 4.167 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.399 0.601 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.368 0.632 48 H 0.255 0.745 49 H 0.065 0.935 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 10.596 18.592 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.039 4.039 3 H 0.106 0.894 4 C -0.177 4.177 5 C -0.163 4.163 6 C -0.038 4.038 7 H 0.067 0.933 8 C -0.191 4.191 9 N -0.227 5.227 10 C -0.103 4.103 11 C 0.290 3.710 12 O -0.392 6.392 13 N -0.382 5.382 14 C 0.011 3.989 15 C -0.138 4.138 16 H 0.108 0.892 17 C -0.188 4.188 18 C 0.060 3.940 19 H 0.081 0.919 20 N -0.357 5.357 21 C -0.464 4.464 22 H 0.084 0.916 23 C -0.242 4.242 24 N -0.588 5.588 25 Si 0.911 3.089 26 H -0.210 1.210 27 H -0.222 1.222 28 H -0.222 1.222 29 C -0.208 4.208 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.233 0.767 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.201 0.799 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.186 10.181 17.582 23.691 hybrid contribution 0.236 0.387 1.099 1.189 sum 12.421 10.569 18.682 24.799 Atomic orbital electron populations 1.22431 0.95780 1.02298 1.02621 1.22464 0.93800 0.98987 0.88614 0.89358 1.22879 0.97820 0.99460 0.97588 1.22759 0.98135 1.00330 0.95125 1.22651 0.95611 0.91338 0.94178 0.93257 1.21842 0.95985 1.01799 0.99492 1.63406 1.20161 1.23387 1.15703 1.22306 0.94389 1.01304 0.92333 1.20537 0.85972 0.78420 0.86106 1.90667 1.18458 1.54963 1.75114 1.46101 1.18432 1.53994 1.19690 1.21408 0.96641 0.97966 0.82889 1.22698 0.98337 0.95785 0.96970 0.89206 1.23455 1.00471 0.99707 0.95200 1.20987 0.86438 0.94468 0.92101 0.91874 1.42173 1.04102 1.06991 1.82437 1.20087 0.95487 0.86412 1.44455 0.91585 1.25809 0.93039 1.05132 1.00223 1.70893 1.37754 0.98201 1.51941 0.83234 0.76243 0.73508 0.75911 1.21010 1.22231 1.22171 1.23867 1.00706 0.94417 1.01813 0.92190 0.91813 0.91675 0.91328 0.90698 0.90907 0.90452 0.91748 0.93659 0.91124 0.87274 0.92230 0.76682 0.91735 0.91933 0.90304 0.91505 0.79880 0.93432 0.91654 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 7.81 37.16 0.29 -0.83 16 2 C 0.07 0.55 4.02 -66.73 -0.27 0.28 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -0.95 6.47 -24.91 -0.16 -1.11 16 5 C -0.13 -0.98 6.49 -24.59 -0.16 -1.14 16 6 C 0.07 0.70 2.83 -66.19 -0.19 0.52 16 7 H 0.05 0.51 7.59 -51.93 -0.39 0.11 16 8 C -0.13 -1.54 8.27 37.16 0.31 -1.23 16 9 N -0.50 -5.15 4.51 -216.95 -0.98 -6.13 16 10 C 0.03 0.27 4.17 -4.98 -0.02 0.25 16 11 C 0.50 6.37 7.04 -10.99 -0.08 6.29 16 12 O -0.52 -8.22 13.13 5.56 0.07 -8.15 16 13 N -0.73 -8.62 5.56 -60.29 -0.33 -8.95 16 14 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 15 C -0.12 -1.75 3.63 -89.81 -0.33 -2.07 16 16 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 17 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 18 C 0.17 3.37 4.56 -67.12 -0.31 3.06 16 19 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 20 N -0.72 -17.56 5.31 -52.64 -0.28 -17.84 16 21 C -0.33 -9.25 9.97 -15.06 -0.15 -9.40 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 24 N -0.94 -28.73 13.70 55.49 0.76 -27.97 16 25 Si 1.08 25.57 29.92 -169.99 -5.09 20.48 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 C -0.17 -2.76 7.43 -25.92 -0.19 -2.95 16 30 H 0.06 0.39 6.71 -51.93 -0.35 0.05 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 6.66 -51.93 -0.35 0.07 16 33 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 37 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.98 5.55 -51.93 -0.29 0.69 16 40 H 0.11 0.93 6.04 -51.93 -0.31 0.61 16 41 H 0.06 0.50 6.78 -51.93 -0.35 0.15 16 42 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 43 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.37 9.23 6.73 -40.82 -0.27 8.96 16 48 H 0.25 7.61 6.77 -40.82 -0.28 7.33 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -32.23 382.93 -10.50 -42.72 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.86 Total: 10.60 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.56 Total: -10.53 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.83 Total: -60.90 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.07 Total: -8.15 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.23 -10.50 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691184394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.562 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds