Wall clock time and date at job start Fri Apr 10 2020 18:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.00818 * 2 1 4 4 C 1.54318 * 109.88828 * 121.11626 * 2 1 3 5 5 C 1.55135 * 103.02066 * 141.69101 * 4 2 1 6 6 C 1.54914 * 101.65215 * 324.34470 * 5 4 2 7 7 H 1.09001 * 110.37024 * 278.24559 * 6 5 4 8 8 C 1.52997 * 110.37234 * 155.90245 * 6 5 4 9 9 N 1.47438 * 109.88768 * 238.88236 * 2 1 3 10 10 C 1.46905 * 111.00188 * 3.85711 * 9 2 1 11 11 C 1.50693 * 109.47036 * 167.80329 * 10 9 2 12 12 O 1.21274 * 120.00424 * 342.35034 * 11 10 9 13 13 N 1.34778 * 120.00021 * 162.35937 * 11 10 9 14 14 C 1.46503 * 120.00308 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46998 * 179.97438 * 14 13 11 16 16 H 1.08995 * 112.84772 * 43.80806 * 15 14 13 17 17 C 1.53781 * 113.60949 * 175.00193 * 15 14 13 18 18 C 1.53777 * 87.07948 * 139.98111 * 17 15 14 19 19 H 1.09002 * 113.61670 * 219.92951 * 18 17 15 20 20 N 1.46502 * 113.61584 * 89.11531 * 18 17 15 21 21 C 1.36933 * 120.00245 * 155.00080 * 20 18 17 22 22 H 1.08003 * 119.99712 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99980 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00256 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99865 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47027 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.46956 * 60.00035 * 25 23 21 28 28 H 1.48504 * 109.47173 * 300.00111 * 25 23 21 29 29 C 1.53780 * 87.08279 * 334.56370 * 18 17 15 30 30 H 1.08998 * 109.47549 * 175.42218 * 1 2 3 31 31 H 1.09001 * 109.47368 * 295.41865 * 1 2 3 32 32 H 1.09003 * 109.47585 * 55.41504 * 1 2 3 33 33 H 1.09004 * 110.70821 * 23.30087 * 4 2 1 34 34 H 1.09000 * 110.70496 * 260.07483 * 4 2 1 35 35 H 1.09007 * 110.99017 * 206.25628 * 5 4 2 36 36 H 1.09001 * 111.02622 * 82.45172 * 5 4 2 37 37 H 1.09009 * 109.46791 * 291.60776 * 8 6 5 38 38 H 1.08999 * 109.47268 * 51.61203 * 8 6 5 39 39 H 1.08996 * 109.46639 * 171.61847 * 8 6 5 40 40 H 1.08998 * 109.47150 * 47.79895 * 10 9 2 41 41 H 1.09005 * 109.46537 * 287.79992 * 10 9 2 42 42 H 0.97004 * 119.99559 * 359.97438 * 13 11 10 43 43 H 1.09002 * 109.46871 * 59.99834 * 14 13 11 44 44 H 1.08996 * 109.46697 * 299.99879 * 14 13 11 45 45 H 1.09002 * 113.61787 * 25.43086 * 17 15 14 46 46 H 1.09001 * 113.68621 * 254.53923 * 17 15 14 47 47 H 0.97005 * 119.99778 * 334.99682 * 20 18 17 48 48 H 0.96994 * 119.99905 * 359.97438 * 24 23 21 49 49 H 1.08999 * 113.61400 * 139.97542 * 29 18 17 50 50 H 1.08995 * 113.61546 * 270.88635 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7499 1.2424 5 6 3.2891 -1.5134 0.6941 6 6 2.8189 -1.8833 -0.7348 7 1 2.1938 -2.7760 -0.7094 8 6 4.0236 -2.1010 -1.6524 9 7 2.0315 -0.7165 -1.1870 10 6 0.9239 -1.1340 -2.0570 11 6 1.4721 -1.5882 -3.3851 12 8 2.5975 -1.2787 -3.7145 13 7 0.7117 -2.3381 -4.2072 14 6 1.2444 -2.7793 -5.4987 15 6 0.1874 -3.6095 -6.2296 16 1 -0.8083 -3.1694 -6.1755 17 6 0.6026 -4.0208 -7.6521 18 6 -0.0410 -5.3866 -7.3603 19 1 0.5269 -6.2298 -7.7536 20 7 -1.4640 -5.4500 -7.7026 21 6 -2.0456 -6.6554 -7.9922 22 1 -1.4550 -7.5594 -7.9686 23 6 -3.3940 -6.7155 -8.3161 24 7 -4.1138 -5.6140 -8.3443 25 14 -4.1871 -8.3599 -8.7118 26 1 -5.6247 -8.1541 -9.0220 27 1 -4.0583 -9.2658 -7.5422 28 1 -3.5090 -8.9669 -9.8852 29 6 0.2226 -5.1047 -5.8717 30 1 -0.3634 -1.0243 -0.0820 31 1 -0.3634 0.4411 0.9282 32 1 -0.3634 0.5833 -0.8461 33 1 1.3055 -1.4471 1.6170 34 1 2.3513 -0.0465 2.0204 35 1 3.4881 -2.4085 1.2836 36 1 4.1661 -0.8670 0.6615 37 1 4.5308 -1.1504 -1.8178 38 1 4.7133 -2.8044 -1.1858 39 1 3.6850 -2.5031 -2.6072 40 1 0.2467 -0.2939 -2.2115 41 1 0.3827 -1.9553 -1.5872 42 1 -0.1884 -2.5858 -3.9436 43 1 2.1346 -3.3869 -5.3360 44 1 1.5038 -1.9087 -6.1011 45 1 1.6821 -4.0684 -7.7953 46 1 0.0959 -3.4580 -8.4361 47 1 -1.9943 -4.6380 -7.7241 48 1 -3.7021 -4.7602 -8.1384 49 1 -0.5917 -5.4162 -5.2175 50 1 1.1981 -5.4485 -5.5282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691184394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:02 Heat of formation + Delta-G solvation = -18.920152 kcal Electronic energy + Delta-G solvation = -26050.212115 eV Core-core repulsion = 22498.367890 eV Total energy + Delta-G solvation = -3551.844225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38092 -40.39043 -39.42145 -36.20102 -35.12180 -33.94248 -33.00886 -31.85880 -29.41460 -28.87916 -26.96996 -26.53880 -25.50953 -24.77351 -23.23081 -21.92391 -21.71534 -20.32071 -19.95085 -19.41102 -18.27696 -17.42470 -16.91050 -16.79674 -16.54945 -16.32233 -15.96187 -15.60811 -15.31331 -15.16032 -14.81873 -14.69440 -14.17165 -13.87116 -13.73389 -13.55048 -13.51315 -13.40433 -13.10399 -12.96666 -12.80876 -12.65895 -12.53657 -12.25434 -12.15474 -11.95389 -11.78153 -11.63454 -11.60167 -11.57014 -11.43973 -11.35801 -11.00048 -10.87597 -10.63047 -9.97007 -9.26606 -9.12454 -8.40540 -5.34628 1.58664 1.68105 1.68823 1.84610 2.13135 2.70211 2.97163 3.37325 3.57677 3.62736 3.63660 3.70042 3.75952 3.91806 3.99643 4.05380 4.17391 4.21242 4.23292 4.31500 4.34045 4.42926 4.45066 4.53885 4.64246 4.72970 4.73582 4.79875 4.83219 4.83437 4.89259 4.97289 4.99116 5.01321 5.12736 5.18203 5.19436 5.24943 5.27190 5.41176 5.43786 5.49427 5.56955 5.65585 6.00396 6.07889 6.48498 6.62102 7.08686 7.33105 7.99127 8.09853 9.11246 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.002384 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.435632 B =11741.017664 C =12198.910442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 H 0.084 0.916 4 C -0.132 4.132 5 C -0.122 4.122 6 C 0.067 3.933 7 H 0.048 0.952 8 C -0.126 4.126 9 N -0.522 5.522 10 C 0.033 3.967 11 C 0.502 3.498 12 O -0.553 6.553 13 N -0.724 5.724 14 C 0.145 3.855 15 C -0.100 4.100 16 H 0.081 0.919 17 C -0.135 4.135 18 C 0.147 3.853 19 H 0.056 0.944 20 N -0.731 5.731 21 C -0.333 4.333 22 H 0.066 0.934 23 C -0.104 4.104 24 N -0.975 5.975 25 Si 1.127 2.873 26 H -0.293 1.293 27 H -0.278 1.278 28 H -0.278 1.278 29 C -0.151 4.151 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.409 0.591 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.057 0.943 47 H 0.361 0.639 48 H 0.244 0.756 49 H 0.047 0.953 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.837 10.421 20.243 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.041 4.041 3 H 0.102 0.898 4 C -0.171 4.171 5 C -0.160 4.160 6 C -0.040 4.040 7 H 0.066 0.934 8 C -0.184 4.184 9 N -0.248 5.248 10 C -0.098 4.098 11 C 0.289 3.711 12 O -0.430 6.430 13 N -0.377 5.377 14 C 0.021 3.979 15 C -0.119 4.119 16 H 0.100 0.900 17 C -0.175 4.175 18 C 0.037 3.963 19 H 0.074 0.926 20 N -0.372 5.372 21 C -0.464 4.464 22 H 0.084 0.916 23 C -0.295 4.295 24 N -0.623 5.623 25 Si 0.952 3.048 26 H -0.219 1.219 27 H -0.204 1.204 28 H -0.204 1.204 29 C -0.191 4.191 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.244 0.756 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.076 0.924 47 H 0.194 0.806 48 H 0.055 0.945 49 H 0.066 0.934 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.678 10.010 19.262 25.139 hybrid contribution 0.214 0.462 0.578 0.770 sum 12.892 10.472 19.841 25.875 Atomic orbital electron populations 1.22390 0.94564 1.02467 1.03304 1.22521 0.94821 0.98563 0.88200 0.89794 1.22862 0.97318 0.99569 0.97323 1.22738 0.98455 1.00930 0.93879 1.22641 0.94967 0.91400 0.95034 0.93415 1.21742 0.96891 1.00909 0.98858 1.63333 1.20803 1.23686 1.16944 1.22315 0.94396 1.02332 0.90723 1.21084 0.85435 0.77701 0.86904 1.90658 1.20047 1.56320 1.75998 1.46040 1.18835 1.53718 1.19125 1.21181 0.95823 0.97481 0.83382 1.22474 0.98378 0.94855 0.96153 0.90050 1.23356 1.01579 0.96862 0.95664 1.21321 0.84186 0.96329 0.94415 0.92597 1.42296 1.06006 1.05769 1.83083 1.20417 0.95690 0.87592 1.42705 0.91560 1.27186 0.94195 1.07413 1.00716 1.70996 1.38267 0.98492 1.54529 0.82632 0.74920 0.70444 0.76819 1.21927 1.20362 1.20438 1.23680 1.01083 0.95510 0.98872 0.92078 0.90572 0.91726 0.90619 0.89356 0.89721 0.90871 0.93495 0.92407 0.93599 0.85872 0.90561 0.75587 0.91862 0.92197 0.87678 0.92440 0.80644 0.94522 0.93445 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 7.81 71.98 0.56 -1.23 16 2 C 0.07 0.92 4.02 45.26 0.18 1.11 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.13 -1.49 6.47 31.77 0.21 -1.28 16 5 C -0.12 -1.70 6.49 31.98 0.21 -1.49 16 6 C 0.07 1.28 2.83 45.39 0.13 1.41 16 7 H 0.05 0.91 7.59 -2.39 -0.02 0.89 16 8 C -0.13 -2.90 8.27 71.98 0.60 -2.30 16 9 N -0.52 -10.09 4.51 -840.31 -3.79 -13.89 16 10 C 0.03 0.60 4.17 85.55 0.36 0.95 16 11 C 0.50 12.21 7.04 87.65 0.62 12.83 16 12 O -0.55 -17.50 13.13 -3.01 -0.04 -17.54 16 13 N -0.72 -16.17 5.56 -463.06 -2.57 -18.75 16 14 C 0.15 3.63 5.51 86.38 0.48 4.10 16 15 C -0.10 -2.81 3.63 -10.27 -0.04 -2.85 16 16 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 18 C 0.15 5.69 4.56 45.52 0.21 5.90 16 19 H 0.06 2.21 8.10 -2.39 -0.02 2.20 16 20 N -0.73 -36.16 5.31 -320.45 -1.70 -37.86 16 21 C -0.33 -18.53 9.97 84.03 0.84 -17.69 16 22 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 23 C -0.10 -5.98 5.50 84.86 0.47 -5.51 16 24 N -0.97 -60.38 13.70 21.65 0.30 -60.08 16 25 Si 1.13 51.40 29.92 68.60 2.05 53.45 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 29 C -0.15 -4.81 7.43 31.12 0.23 -4.58 16 30 H 0.06 0.64 6.71 -2.39 -0.02 0.63 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.69 6.66 -2.39 -0.02 0.67 16 33 H 0.08 0.77 7.85 -2.39 -0.02 0.75 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 37 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.28 5.55 -2.39 -0.01 1.26 16 40 H 0.12 1.86 6.04 -2.39 -0.01 1.84 16 41 H 0.08 1.12 6.78 -2.38 -0.02 1.10 16 42 H 0.41 7.69 8.47 -92.71 -0.79 6.90 16 43 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16 44 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.10 2.70 8.10 -2.39 -0.02 2.68 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.36 18.55 6.73 -92.70 -0.62 17.92 16 48 H 0.24 15.01 6.77 -92.71 -0.63 14.38 16 49 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.09 2.52 7.89 -2.39 -0.02 2.50 16 Total: -1.00 -70.15 382.93 -0.83 -70.99 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.34 Total: 38.25 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.27 Total: -14.56 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -7.77 Total: -130.58 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.04 Total: -17.54 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -70.15 -0.83 -70.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691184394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.067 kcal (2) G-P(sol) polarization free energy of solvation -70.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds