Wall clock time and date at job start Fri Apr 10 2020 18:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.41768 * 2 1 4 4 C 1.54903 * 110.37285 * 237.68160 * 2 1 3 5 5 C 1.55133 * 101.65475 * 204.09960 * 4 2 1 6 6 C 1.54316 * 103.01749 * 35.65401 * 5 4 2 7 7 H 1.09007 * 109.88673 * 97.12031 * 6 5 4 8 8 C 1.53001 * 109.89235 * 218.30771 * 6 5 4 9 9 N 1.47443 * 107.23385 * 337.71822 * 6 5 4 10 10 C 1.46897 * 110.99657 * 236.73740 * 9 6 5 11 11 C 1.50696 * 109.47082 * 72.54352 * 10 9 6 12 12 O 1.21283 * 119.99873 * 354.32339 * 11 10 9 13 13 N 1.34783 * 120.00223 * 174.31975 * 11 10 9 14 14 C 1.46501 * 119.99837 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46755 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.47201 * 180.02562 * 15 14 13 17 17 C 1.36935 * 120.00032 * 90.00098 * 16 15 14 18 18 H 1.08005 * 119.99877 * 219.99167 * 17 16 15 19 19 C 1.38811 * 120.00279 * 39.99487 * 17 16 15 20 20 N 1.31626 * 119.99540 * 17.86478 * 19 17 16 21 21 Si 1.86797 * 120.00306 * 197.86852 * 19 17 16 22 22 H 1.48493 * 109.46984 * 270.00284 * 21 19 17 23 23 H 1.48503 * 109.46842 * 29.99623 * 21 19 17 24 24 H 1.48495 * 109.47113 * 149.99846 * 21 19 17 25 25 C 1.46504 * 119.99806 * 270.00442 * 16 15 14 26 26 C 1.52996 * 117.49920 * 183.83346 * 25 16 15 27 27 C 1.52996 * 117.49890 * 115.17065 * 25 16 15 28 28 H 1.08998 * 109.47023 * 302.76762 * 1 2 3 29 29 H 1.08995 * 109.46891 * 62.76923 * 1 2 3 30 30 H 1.09001 * 109.46718 * 182.76874 * 1 2 3 31 31 H 1.09007 * 110.98588 * 86.00768 * 4 2 1 32 32 H 1.09000 * 110.99486 * 322.19928 * 4 2 1 33 33 H 1.09002 * 110.70740 * 277.27653 * 5 4 2 34 34 H 1.09005 * 110.70802 * 154.04154 * 5 4 2 35 35 H 1.08991 * 109.47304 * 172.27001 * 8 6 5 36 36 H 1.08999 * 109.46827 * 292.27130 * 8 6 5 37 37 H 1.09003 * 109.46626 * 52.26840 * 8 6 5 38 38 H 1.08999 * 109.47530 * 312.53852 * 10 9 6 39 39 H 1.09003 * 109.46947 * 192.53997 * 10 9 6 40 40 H 0.96999 * 119.99658 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.46953 * 60.00774 * 14 13 11 42 42 H 1.08998 * 109.47427 * 300.00086 * 14 13 11 43 43 H 1.08998 * 109.47384 * 60.00467 * 15 14 13 44 44 H 1.08998 * 109.47300 * 300.00257 * 15 14 13 45 45 H 0.96995 * 119.99343 * 174.97614 * 20 19 17 46 46 H 1.09001 * 115.54906 * 329.50061 * 25 16 15 47 47 H 1.09007 * 117.49538 * 359.97438 * 26 25 16 48 48 H 1.08995 * 117.50429 * 145.02059 * 26 25 16 49 49 H 1.09003 * 117.49814 * 214.97807 * 27 25 16 50 50 H 1.08996 * 117.50230 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1996 -0.7358 6 6 3.2536 -1.4806 0.7648 7 1 3.1055 -2.5488 0.9239 8 6 4.4583 -0.9932 1.5722 9 7 2.0447 -0.7408 1.1713 10 6 2.3358 0.1718 2.2851 11 6 3.1457 1.3381 1.7804 12 8 3.5381 1.3525 0.6329 13 7 3.4339 2.3652 2.6041 14 6 4.2217 3.4987 2.1135 15 6 4.4037 4.5185 3.2395 16 7 5.1910 5.6524 2.7488 17 6 4.5618 6.7299 2.1847 18 1 4.9868 7.2092 1.3152 19 6 3.3777 7.2062 2.7305 20 7 3.0397 6.8760 3.9590 21 14 2.2639 8.3157 1.7216 22 1 2.6460 9.7335 1.9425 23 1 2.4072 7.9831 0.2814 24 1 0.8533 8.1123 2.1387 25 6 6.6516 5.6335 2.8616 26 6 7.4110 6.8839 2.4137 27 6 7.4602 5.6123 1.5629 28 1 -0.3633 0.5562 0.8641 29 1 -0.3633 0.4702 -0.9137 30 1 -0.3633 -1.0265 0.0496 31 1 2.1388 -0.1272 -2.1001 32 1 1.4515 -1.6488 -1.4397 33 1 4.1942 -0.3888 -0.8728 34 1 3.8120 -2.1005 -1.2509 35 1 4.2368 -1.0681 2.6367 36 1 5.3263 -1.6093 1.3374 37 1 4.6702 0.0453 1.3174 38 1 2.9011 -0.3587 3.0513 39 1 1.4005 0.5358 2.7104 40 1 3.1203 2.3535 3.5220 41 1 3.7015 3.9686 1.2789 42 1 5.1980 3.1460 1.7810 43 1 4.9237 4.0490 4.0745 44 1 3.4273 4.8713 3.5716 45 1 2.2506 7.2662 4.3663 46 1 7.0503 5.0801 3.7118 47 1 6.8239 7.7205 2.0347 48 1 8.3096 7.1529 2.9689 49 1 8.3911 5.0452 1.5588 50 1 6.9056 5.6120 0.6246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691237102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:10 Heat of formation + Delta-G solvation = 39.885120 kcal Electronic energy + Delta-G solvation = -27250.030971 eV Core-core repulsion = 23700.736734 eV Total energy + Delta-G solvation = -3549.294237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94044 -38.00355 -37.08744 -34.73208 -33.29487 -32.87205 -32.07357 -30.81441 -28.22269 -27.96621 -26.02340 -24.32320 -23.67599 -21.69778 -21.41689 -20.84018 -20.51810 -19.90019 -19.20457 -17.18807 -16.38942 -16.22855 -15.89961 -15.55104 -15.29396 -14.59548 -14.48398 -14.30948 -14.07506 -13.52308 -13.32374 -12.97367 -12.96236 -12.80329 -12.56899 -12.24402 -11.97388 -11.61034 -11.57327 -11.46449 -11.33212 -11.09614 -10.88761 -10.86854 -10.72148 -10.64814 -10.54209 -10.52314 -10.33213 -10.17661 -10.00016 -9.81841 -9.61569 -9.30083 -8.62335 -8.51893 -8.05114 -6.57764 -5.93799 -3.54571 2.82111 3.27239 3.35487 3.39359 3.55428 3.92510 4.35123 4.70967 4.75999 4.88605 4.95359 5.10547 5.23118 5.24255 5.26764 5.30750 5.41085 5.43921 5.57100 5.61510 5.71487 5.78584 5.84786 5.86230 5.93220 5.95180 6.01372 6.06370 6.11479 6.15908 6.19473 6.25134 6.28845 6.43427 6.46176 6.47238 6.50361 6.57665 6.84503 6.89199 6.99938 7.03252 7.06794 7.10054 7.45134 7.72167 7.85814 8.40982 8.50277 9.04780 9.65180 10.23069 11.07403 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003857 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.904387 B = 7257.897074 C = 8206.771914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.043 3.957 3 H 0.100 0.900 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.077 3.923 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.500 5.500 10 C 0.018 3.982 11 C 0.480 3.520 12 O -0.537 6.537 13 N -0.717 5.717 14 C 0.099 3.901 15 C 0.141 3.859 16 N -0.547 5.547 17 C -0.263 4.263 18 H 0.062 0.938 19 C 0.020 3.980 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.283 1.283 23 H -0.276 1.276 24 H -0.287 1.287 25 C 0.125 3.875 26 C -0.188 4.188 27 C -0.228 4.228 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.398 0.602 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.030 0.970 44 H 0.101 0.899 45 H 0.258 0.742 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 -14.877 -2.453 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 H 0.117 0.883 4 C -0.154 4.154 5 C -0.167 4.167 6 C -0.031 4.031 7 H 0.095 0.905 8 C -0.255 4.255 9 N -0.223 5.223 10 C -0.114 4.114 11 C 0.266 3.734 12 O -0.417 6.417 13 N -0.367 5.367 14 C -0.027 4.027 15 C 0.014 3.986 16 N -0.263 5.263 17 C -0.393 4.393 18 H 0.080 0.920 19 C -0.181 4.181 20 N -0.531 5.531 21 Si 0.729 3.271 22 H -0.210 1.210 23 H -0.201 1.201 24 H -0.213 1.213 25 C 0.016 3.984 26 C -0.226 4.226 27 C -0.269 4.269 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.231 0.769 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.119 0.881 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.370 -15.194 -2.975 15.543 hybrid contribution -0.028 1.222 -0.267 1.251 sum -1.398 -13.972 -3.242 14.412 Atomic orbital electron populations 1.21735 0.94979 1.01608 1.01017 1.23132 0.94605 1.00040 0.88687 0.88305 1.22566 0.96008 0.99386 0.97392 1.22779 0.97907 1.01191 0.94866 1.22239 0.88498 0.97757 0.94562 0.90486 1.22954 0.97947 1.04893 0.99684 1.64009 1.27414 1.23646 1.07227 1.22588 1.00294 0.91799 0.96700 1.21694 0.80565 0.84556 0.86616 1.90596 1.53070 1.79967 1.18093 1.46308 1.54642 1.20874 1.14917 1.22328 0.93938 0.85872 1.00544 1.21052 0.99975 0.86009 0.91516 1.43140 0.98215 1.15585 1.69406 1.18928 1.04799 1.07989 1.07579 0.92047 1.25282 1.00072 0.97742 0.95015 1.69855 1.27010 1.44474 1.11779 0.86341 0.80027 0.80516 0.80261 1.20992 1.20137 1.21325 1.21141 0.84651 0.98986 0.93672 1.23025 1.01576 0.93352 1.04674 1.23432 1.02401 1.02435 0.98645 0.93119 0.92705 0.92564 0.91380 0.91736 0.90147 0.92116 0.92512 0.92806 0.89117 0.87283 0.88321 0.76907 0.91849 0.93064 0.95163 0.88118 0.93213 0.89821 0.88237 0.90635 0.90897 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.59 37.16 0.36 -1.23 16 2 C 0.04 0.57 2.41 -66.19 -0.16 0.41 16 3 H 0.10 1.62 4.67 -52.17 -0.24 1.37 16 4 C -0.12 -1.42 6.49 -24.60 -0.16 -1.58 16 5 C -0.13 -1.61 5.94 -24.91 -0.15 -1.76 16 6 C 0.08 0.94 3.72 -66.73 -0.25 0.69 16 7 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 8 C -0.20 -2.41 7.71 37.16 0.29 -2.12 16 9 N -0.50 -6.29 5.06 -216.96 -1.10 -7.39 16 10 C 0.02 0.22 5.58 -4.98 -0.03 0.19 16 11 C 0.48 7.16 5.25 -10.98 -0.06 7.10 16 12 O -0.54 -9.48 9.68 5.56 0.05 -9.43 16 13 N -0.72 -10.98 5.56 -60.29 -0.33 -11.31 16 14 C 0.10 1.90 6.00 -4.04 -0.02 1.87 16 15 C 0.14 3.01 5.44 -4.04 -0.02 2.99 16 16 N -0.55 -12.90 2.75 -165.66 -0.45 -13.36 16 17 C -0.26 -6.85 8.29 -15.06 -0.12 -6.97 16 18 H 0.06 1.63 7.06 -52.48 -0.37 1.26 16 19 C 0.02 0.51 5.02 -17.43 -0.09 0.43 16 20 N -0.89 -24.04 11.42 55.49 0.63 -23.41 16 21 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.12 2.60 6.56 -67.93 -0.45 2.16 16 26 C -0.19 -3.68 9.79 -26.69 -0.26 -3.94 16 27 C -0.23 -4.32 10.35 -26.69 -0.28 -4.60 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 33 H 0.08 1.18 6.80 -51.93 -0.35 0.83 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.62 5.93 -51.93 -0.31 0.31 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.36 4.15 -51.93 -0.22 1.14 16 38 H 0.11 1.10 5.75 -51.93 -0.30 0.81 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.40 5.14 8.47 -40.82 -0.35 4.79 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 44 H 0.10 2.41 5.55 -51.93 -0.29 2.12 16 45 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 46 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.10 2.14 6.64 -51.93 -0.34 1.79 16 48 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -28.07 376.99 -10.61 -38.68 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -8.66 Total: 11.00 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.40 Total: -6.36 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.26 Total: -55.47 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.05 Total: -9.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.07 -10.61 -38.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691237102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.568 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds