Wall clock time and date at job start Fri Apr 10 2020 18:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.41768 * 2 1 4 4 C 1.54903 * 110.37285 * 237.68160 * 2 1 3 5 5 C 1.55133 * 101.65475 * 204.09960 * 4 2 1 6 6 C 1.54316 * 103.01749 * 35.65401 * 5 4 2 7 7 H 1.09007 * 109.88673 * 97.12031 * 6 5 4 8 8 C 1.53001 * 109.89235 * 218.30771 * 6 5 4 9 9 N 1.47443 * 107.23385 * 337.71822 * 6 5 4 10 10 C 1.46897 * 110.99657 * 236.73740 * 9 6 5 11 11 C 1.50696 * 109.47082 * 72.54352 * 10 9 6 12 12 O 1.21283 * 119.99873 * 354.32339 * 11 10 9 13 13 N 1.34783 * 120.00223 * 174.31975 * 11 10 9 14 14 C 1.46501 * 119.99837 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46755 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.47201 * 180.02562 * 15 14 13 17 17 C 1.36935 * 120.00032 * 90.00098 * 16 15 14 18 18 H 1.08005 * 119.99877 * 219.99167 * 17 16 15 19 19 C 1.38811 * 120.00279 * 39.99487 * 17 16 15 20 20 N 1.31626 * 119.99540 * 17.86478 * 19 17 16 21 21 Si 1.86797 * 120.00306 * 197.86852 * 19 17 16 22 22 H 1.48493 * 109.46984 * 270.00284 * 21 19 17 23 23 H 1.48503 * 109.46842 * 29.99623 * 21 19 17 24 24 H 1.48495 * 109.47113 * 149.99846 * 21 19 17 25 25 C 1.46504 * 119.99806 * 270.00442 * 16 15 14 26 26 C 1.52996 * 117.49920 * 183.83346 * 25 16 15 27 27 C 1.52996 * 117.49890 * 115.17065 * 25 16 15 28 28 H 1.08998 * 109.47023 * 302.76762 * 1 2 3 29 29 H 1.08995 * 109.46891 * 62.76923 * 1 2 3 30 30 H 1.09001 * 109.46718 * 182.76874 * 1 2 3 31 31 H 1.09007 * 110.98588 * 86.00768 * 4 2 1 32 32 H 1.09000 * 110.99486 * 322.19928 * 4 2 1 33 33 H 1.09002 * 110.70740 * 277.27653 * 5 4 2 34 34 H 1.09005 * 110.70802 * 154.04154 * 5 4 2 35 35 H 1.08991 * 109.47304 * 172.27001 * 8 6 5 36 36 H 1.08999 * 109.46827 * 292.27130 * 8 6 5 37 37 H 1.09003 * 109.46626 * 52.26840 * 8 6 5 38 38 H 1.08999 * 109.47530 * 312.53852 * 10 9 6 39 39 H 1.09003 * 109.46947 * 192.53997 * 10 9 6 40 40 H 0.96999 * 119.99658 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.46953 * 60.00774 * 14 13 11 42 42 H 1.08998 * 109.47427 * 300.00086 * 14 13 11 43 43 H 1.08998 * 109.47384 * 60.00467 * 15 14 13 44 44 H 1.08998 * 109.47300 * 300.00257 * 15 14 13 45 45 H 0.96995 * 119.99343 * 174.97614 * 20 19 17 46 46 H 1.09001 * 115.54906 * 329.50061 * 25 16 15 47 47 H 1.09007 * 117.49538 * 359.97438 * 26 25 16 48 48 H 1.08995 * 117.50429 * 145.02059 * 26 25 16 49 49 H 1.09003 * 117.49814 * 214.97807 * 27 25 16 50 50 H 1.08996 * 117.50230 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1996 -0.7358 6 6 3.2536 -1.4806 0.7648 7 1 3.1055 -2.5488 0.9239 8 6 4.4583 -0.9932 1.5722 9 7 2.0447 -0.7408 1.1713 10 6 2.3358 0.1718 2.2851 11 6 3.1457 1.3381 1.7804 12 8 3.5381 1.3525 0.6329 13 7 3.4339 2.3652 2.6041 14 6 4.2217 3.4987 2.1135 15 6 4.4037 4.5185 3.2395 16 7 5.1910 5.6524 2.7488 17 6 4.5618 6.7299 2.1847 18 1 4.9868 7.2092 1.3152 19 6 3.3777 7.2062 2.7305 20 7 3.0397 6.8760 3.9590 21 14 2.2639 8.3157 1.7216 22 1 2.6460 9.7335 1.9425 23 1 2.4072 7.9831 0.2814 24 1 0.8533 8.1123 2.1387 25 6 6.6516 5.6335 2.8616 26 6 7.4110 6.8839 2.4137 27 6 7.4602 5.6123 1.5629 28 1 -0.3633 0.5562 0.8641 29 1 -0.3633 0.4702 -0.9137 30 1 -0.3633 -1.0265 0.0496 31 1 2.1388 -0.1272 -2.1001 32 1 1.4515 -1.6488 -1.4397 33 1 4.1942 -0.3888 -0.8728 34 1 3.8120 -2.1005 -1.2509 35 1 4.2368 -1.0681 2.6367 36 1 5.3263 -1.6093 1.3374 37 1 4.6702 0.0453 1.3174 38 1 2.9011 -0.3587 3.0513 39 1 1.4005 0.5358 2.7104 40 1 3.1203 2.3535 3.5220 41 1 3.7015 3.9686 1.2789 42 1 5.1980 3.1460 1.7810 43 1 4.9237 4.0490 4.0745 44 1 3.4273 4.8713 3.5716 45 1 2.2506 7.2662 4.3663 46 1 7.0503 5.0801 3.7118 47 1 6.8239 7.7205 2.0347 48 1 8.3096 7.1529 2.9689 49 1 8.3911 5.0452 1.5588 50 1 6.9056 5.6120 0.6246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691237102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:09 Heat of formation + Delta-G solvation = 22.589182 kcal Electronic energy + Delta-G solvation = -27250.780979 eV Core-core repulsion = 23700.736734 eV Total energy + Delta-G solvation = -3550.044245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05368 -39.28060 -38.66267 -36.20997 -34.98873 -33.89946 -33.14630 -32.54864 -29.68640 -29.01972 -27.33527 -26.05309 -24.66277 -23.27746 -22.98366 -21.85250 -21.82308 -21.60698 -20.28582 -18.52742 -17.95833 -17.45788 -17.30037 -17.02170 -16.66944 -16.16855 -15.90224 -15.60504 -15.40917 -14.88972 -14.61635 -14.39040 -14.10104 -13.90983 -13.74761 -13.72951 -13.30029 -13.13687 -12.95219 -12.73443 -12.59007 -12.53938 -12.43280 -12.31205 -12.18068 -12.09216 -11.90860 -11.76913 -11.67165 -11.49718 -11.36324 -11.21783 -11.00459 -10.90630 -10.48927 -9.95283 -9.15547 -8.46933 -7.89769 -5.54677 1.39849 1.43934 1.51806 1.63953 2.24569 2.46369 2.94368 3.13233 3.38763 3.52995 3.73911 3.78826 3.91308 4.10321 4.26410 4.29648 4.32720 4.36555 4.38916 4.47148 4.47997 4.50619 4.61830 4.63543 4.64300 4.76616 4.80459 4.84587 4.88434 4.91678 5.01123 5.02181 5.03506 5.18196 5.19954 5.23839 5.26950 5.33531 5.43145 5.47789 5.50532 5.57939 5.64285 5.74188 6.03437 6.04129 6.43654 6.65427 7.11010 7.31438 7.77837 8.29844 9.06599 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003857 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.904387 B = 7257.897074 C = 8206.771914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.040 3.960 3 H 0.066 0.934 4 C -0.114 4.114 5 C -0.128 4.128 6 C 0.075 3.925 7 H 0.095 0.905 8 C -0.192 4.192 9 N -0.496 5.496 10 C 0.024 3.976 11 C 0.479 3.521 12 O -0.564 6.564 13 N -0.713 5.713 14 C 0.127 3.873 15 C 0.149 3.851 16 N -0.565 5.565 17 C -0.268 4.268 18 H 0.048 0.952 19 C -0.021 4.021 20 N -0.911 5.911 21 Si 0.951 3.049 22 H -0.280 1.280 23 H -0.281 1.281 24 H -0.286 1.286 25 C 0.100 3.900 26 C -0.184 4.184 27 C -0.209 4.209 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.411 0.589 41 H 0.024 0.976 42 H 0.042 0.958 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.256 0.744 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -16.749 -1.866 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.068 4.068 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.167 4.167 6 C -0.033 4.033 7 H 0.113 0.887 8 C -0.250 4.250 9 N -0.218 5.218 10 C -0.107 4.107 11 C 0.267 3.733 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.000 4.000 15 C 0.022 3.978 16 N -0.283 5.283 17 C -0.398 4.398 18 H 0.066 0.934 19 C -0.219 4.219 20 N -0.554 5.554 21 Si 0.779 3.221 22 H -0.206 1.206 23 H -0.206 1.206 24 H -0.212 1.212 25 C -0.008 4.008 26 C -0.223 4.223 27 C -0.250 4.250 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.152 0.848 39 H 0.133 0.867 40 H 0.247 0.753 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.093 0.907 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.295 -17.084 -2.381 17.298 hybrid contribution 0.019 1.767 -0.502 1.837 sum -1.276 -15.317 -2.882 15.638 Atomic orbital electron populations 1.21685 0.93626 1.02300 1.01154 1.23060 0.95669 0.98424 0.89658 0.91688 1.22574 0.96183 0.99722 0.96717 1.22742 0.97294 1.00911 0.95726 1.22350 0.88296 0.98562 0.94099 0.88672 1.22860 0.98427 1.03082 1.00616 1.64098 1.27500 1.23239 1.07009 1.22715 1.00682 0.90413 0.96926 1.22338 0.80091 0.84855 0.86046 1.90610 1.53953 1.80496 1.19486 1.46149 1.54573 1.20001 1.15778 1.21697 0.93389 0.86469 0.98474 1.20923 0.98672 0.85830 0.92356 1.43323 0.99629 1.15686 1.69667 1.18977 1.05205 1.08433 1.07187 0.93450 1.25800 1.01067 0.99235 0.95814 1.69949 1.27316 1.45467 1.12655 0.85546 0.78548 0.79274 0.78747 1.20581 1.20606 1.21205 1.21416 0.83409 1.00583 0.95365 1.23033 1.02044 0.92381 1.04799 1.23354 1.02769 1.02157 0.96707 0.93296 0.92398 0.91427 0.92163 0.89979 0.93080 0.90253 0.90956 0.91991 0.92069 0.84843 0.86695 0.75320 0.95724 0.93996 0.93567 0.90573 0.93428 0.87969 0.90743 0.87647 0.87763 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.59 71.99 0.69 -2.15 16 2 C 0.04 1.02 2.41 45.39 0.11 1.13 16 3 H 0.07 2.17 4.67 -6.26 -0.03 2.14 16 4 C -0.11 -2.69 6.49 31.98 0.21 -2.48 16 5 C -0.13 -3.08 5.94 31.77 0.19 -2.89 16 6 C 0.07 1.66 3.72 45.26 0.17 1.83 16 7 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 8 C -0.19 -4.36 7.71 71.98 0.55 -3.81 16 9 N -0.50 -11.51 5.06 -840.32 -4.26 -15.76 16 10 C 0.02 0.53 5.58 85.56 0.48 1.01 16 11 C 0.48 14.19 5.25 87.65 0.46 14.65 16 12 O -0.56 -20.45 9.68 -3.04 -0.03 -20.48 16 13 N -0.71 -21.80 5.56 -463.06 -2.57 -24.37 16 14 C 0.13 5.00 6.00 86.38 0.52 5.52 16 15 C 0.15 6.43 5.44 86.38 0.47 6.90 16 16 N -0.57 -27.06 2.75 -678.04 -1.86 -28.93 16 17 C -0.27 -14.26 8.29 84.03 0.70 -13.57 16 18 H 0.05 2.61 7.06 -2.91 -0.02 2.59 16 19 C -0.02 -1.11 5.02 84.86 0.43 -0.69 16 20 N -0.91 -49.94 11.42 21.65 0.25 -49.69 16 21 Si 0.95 43.79 29.59 68.60 2.03 45.82 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 C 0.10 4.12 6.56 44.99 0.30 4.42 16 26 C -0.18 -7.04 9.79 30.62 0.30 -6.74 16 27 C -0.21 -7.71 10.35 30.62 0.32 -7.39 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.08 1.65 8.06 -2.39 -0.02 1.63 16 33 H 0.05 1.53 6.80 -2.39 -0.02 1.51 16 34 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 35 H 0.07 1.38 5.93 -2.39 -0.01 1.36 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.80 4.15 -2.39 -0.01 1.79 16 38 H 0.13 2.28 5.75 -2.39 -0.01 2.26 16 39 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.41 10.29 8.47 -92.71 -0.79 9.50 16 41 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.82 8.07 -2.39 -0.02 1.80 16 44 H 0.08 3.73 5.55 -2.39 -0.01 3.71 16 45 H 0.26 13.58 8.32 -92.71 -0.77 12.81 16 46 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 47 H 0.07 3.23 6.64 -2.38 -0.02 3.21 16 48 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 49 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 50 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -61.93 376.99 -0.44 -62.37 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.12 Total: 35.32 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.88 Total: -4.27 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -8.44 Total: -118.75 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.03 Total: -20.48 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -61.93 -0.44 -62.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691237102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.960 kcal (2) G-P(sol) polarization free energy of solvation -61.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds