Wall clock time and date at job start Fri Apr 10 2020 18:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.01006 * 2 1 4 4 C 1.54320 * 109.88714 * 121.11530 * 2 1 3 5 5 C 1.55140 * 103.01692 * 141.69081 * 4 2 1 6 6 C 1.54913 * 101.65341 * 324.34247 * 5 4 2 7 7 H 1.08992 * 110.37335 * 278.24152 * 6 5 4 8 8 C 1.52998 * 110.37203 * 155.89944 * 6 5 4 9 9 N 1.47441 * 109.88666 * 238.88554 * 2 1 3 10 10 C 1.46894 * 111.00359 * 3.85341 * 9 2 1 11 11 C 1.50703 * 109.47569 * 168.10764 * 10 9 2 12 12 O 1.21290 * 119.99230 * 342.95715 * 11 10 9 13 13 N 1.34768 * 120.00523 * 162.96608 * 11 10 9 14 14 C 1.46497 * 120.00326 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47398 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.47156 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00537 * 269.99886 * 16 15 14 18 18 H 1.08004 * 119.99551 * 141.15606 * 17 16 15 19 19 C 1.38811 * 119.99667 * 321.16675 * 17 16 15 20 20 N 1.31621 * 119.99595 * 158.23906 * 19 17 16 21 21 Si 1.86793 * 120.00362 * 338.23089 * 19 17 16 22 22 H 1.48502 * 109.47113 * 95.26870 * 21 19 17 23 23 H 1.48504 * 109.47322 * 215.27267 * 21 19 17 24 24 H 1.48507 * 109.47045 * 335.27395 * 21 19 17 25 25 C 1.46502 * 119.99638 * 90.00614 * 16 15 14 26 26 C 1.53007 * 117.49621 * 192.90822 * 25 16 15 27 27 C 1.53000 * 117.50263 * 124.24720 * 25 16 15 28 28 H 1.09003 * 109.47233 * 174.76466 * 1 2 3 29 29 H 1.09000 * 109.47455 * 294.76443 * 1 2 3 30 30 H 1.09002 * 109.47490 * 54.76412 * 1 2 3 31 31 H 1.08997 * 110.70737 * 23.30747 * 4 2 1 32 32 H 1.08999 * 110.70549 * 260.07177 * 4 2 1 33 33 H 1.09002 * 110.98948 * 206.25481 * 5 4 2 34 34 H 1.08996 * 110.99275 * 82.44075 * 5 4 2 35 35 H 1.09001 * 109.47213 * 290.15570 * 8 6 5 36 36 H 1.09001 * 109.47272 * 50.15327 * 8 6 5 37 37 H 1.08994 * 109.47109 * 170.15666 * 8 6 5 38 38 H 1.08995 * 109.47118 * 48.10022 * 10 9 2 39 39 H 1.09003 * 109.47006 * 288.09948 * 10 9 2 40 40 H 0.97003 * 119.99776 * 359.97438 * 13 11 10 41 41 H 1.09001 * 109.47193 * 299.99517 * 14 13 11 42 42 H 1.09001 * 109.47386 * 59.99402 * 14 13 11 43 43 H 1.09000 * 109.47406 * 299.99914 * 15 14 13 44 44 H 1.09002 * 109.47405 * 59.99901 * 15 14 13 45 45 H 0.97001 * 119.99562 * 179.97438 * 20 19 17 46 46 H 1.08998 * 115.54894 * 338.57163 * 25 16 15 47 47 H 1.08996 * 117.50132 * 359.97438 * 26 25 16 48 48 H 1.09002 * 117.49612 * 145.01893 * 26 25 16 49 49 H 1.08994 * 117.49881 * 214.97681 * 27 25 16 50 50 H 1.09000 * 117.49860 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0243 0.0000 4 6 2.0549 -0.7499 1.2424 5 6 3.2891 -1.5134 0.6941 6 6 2.8188 -1.8834 -0.7348 7 1 2.1939 -2.7760 -0.7094 8 6 4.0236 -2.1010 -1.6524 9 7 2.0315 -0.7165 -1.1870 10 6 0.9240 -1.1339 -2.0570 11 6 1.4727 -1.5951 -3.3826 12 8 2.6035 -1.2996 -3.7066 13 7 0.7069 -2.3357 -4.2081 14 6 1.2401 -2.7835 -5.4970 15 6 0.1764 -3.6006 -6.2329 16 7 0.7095 -4.0480 -7.5221 17 6 0.5523 -3.2674 -8.6361 18 1 1.3528 -3.1872 -9.3567 19 6 -0.6359 -2.5790 -8.8392 20 7 -0.6602 -1.5273 -9.6302 21 14 -2.2003 -3.1452 -7.9900 22 1 -2.3882 -2.3755 -6.7340 23 1 -3.3611 -2.9183 -8.8880 24 1 -2.0954 -4.5922 -7.6726 25 6 1.4107 -5.3306 -7.6194 26 6 2.2018 -5.6078 -8.8994 27 6 0.8871 -6.3467 -8.6364 28 1 -0.3634 -1.0234 -0.0938 29 1 -0.3634 0.4305 0.9331 30 1 -0.3634 0.5929 -0.8394 31 1 1.3055 -1.4472 1.6169 32 1 2.3513 -0.0465 2.0204 33 1 3.4881 -2.4084 1.2836 34 1 4.1657 -0.8665 0.6615 35 1 4.5155 -1.1463 -1.8388 36 1 4.7256 -2.7843 -1.1745 37 1 3.6879 -2.5273 -2.5977 38 1 0.2496 -0.2924 -2.2158 39 1 0.3795 -1.9518 -1.5849 40 1 -0.1974 -2.5722 -3.9488 41 1 1.5131 -1.9164 -6.0984 42 1 2.1220 -3.4021 -5.3302 43 1 -0.0962 -4.4678 -5.6315 44 1 -0.7057 -2.9824 -6.3998 45 1 -1.4905 -1.0465 -9.7724 46 1 1.8152 -5.7173 -6.6841 47 1 2.2001 -4.8362 -9.6692 48 1 3.1264 -6.1774 -8.8061 49 1 0.9475 -7.4019 -8.3703 50 1 0.0207 -6.0611 -9.2328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691237103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:12 Heat of formation + Delta-G solvation = 30.144403 kcal Electronic energy + Delta-G solvation = -26676.312584 eV Core-core repulsion = 23126.595958 eV Total energy + Delta-G solvation = -3549.716626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32225 -38.60403 -37.32730 -34.85656 -33.32031 -33.00114 -32.16094 -31.35198 -28.55250 -28.03497 -26.20851 -24.27216 -23.95587 -22.29060 -21.43140 -21.10996 -20.54022 -19.72120 -19.20120 -17.39773 -16.34634 -16.26118 -15.83600 -15.53179 -15.49965 -15.35190 -14.77570 -14.36195 -13.88665 -13.68046 -13.59606 -13.11947 -12.87218 -12.77214 -12.69916 -12.51233 -12.30882 -12.19739 -11.88125 -11.82387 -11.65958 -11.42253 -11.35043 -10.93906 -10.86933 -10.86162 -10.76969 -10.53564 -10.40081 -10.09234 -9.92567 -9.53836 -9.51514 -9.36546 -8.63260 -8.50541 -8.39244 -6.80225 -6.08658 -3.53521 2.95998 3.18216 3.28906 3.38389 3.43880 3.88520 4.37315 4.41638 4.44182 4.60294 4.76357 4.86159 4.96770 4.99135 5.05153 5.12631 5.18815 5.21703 5.25091 5.28785 5.39037 5.52513 5.65154 5.67732 5.72507 5.75957 5.76513 5.79244 5.84557 5.94831 5.98983 6.04464 6.06649 6.15694 6.21952 6.41839 6.43277 6.55241 6.61802 6.74721 6.81731 6.89174 6.94691 6.97801 7.10374 7.86304 7.96615 8.33157 8.61251 8.88768 9.59993 9.98375 11.05850 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.003346 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.241455 B = 8366.392056 C = 9230.216608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.125 4.125 6 C 0.071 3.929 7 H 0.048 0.952 8 C -0.134 4.134 9 N -0.502 5.502 10 C 0.029 3.971 11 C 0.502 3.498 12 O -0.513 6.513 13 N -0.731 5.731 14 C 0.104 3.896 15 C 0.131 3.869 16 N -0.567 5.567 17 C -0.274 4.274 18 H 0.085 0.915 19 C 0.041 3.959 20 N -0.892 5.892 21 Si 0.875 3.125 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.266 1.266 25 C 0.121 3.879 26 C -0.194 4.194 27 C -0.219 4.219 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.393 0.607 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.265 0.735 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -1.762 21.518 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.039 4.039 3 H 0.106 0.894 4 C -0.177 4.177 5 C -0.164 4.164 6 C -0.036 4.036 7 H 0.066 0.934 8 C -0.191 4.191 9 N -0.226 5.226 10 C -0.102 4.102 11 C 0.287 3.713 12 O -0.388 6.388 13 N -0.384 5.384 14 C -0.022 4.022 15 C 0.005 3.995 16 N -0.286 5.286 17 C -0.403 4.403 18 H 0.102 0.898 19 C -0.161 4.161 20 N -0.532 5.532 21 Si 0.705 3.295 22 H -0.214 1.214 23 H -0.228 1.228 24 H -0.190 1.190 25 C 0.012 3.988 26 C -0.233 4.233 27 C -0.260 4.260 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.226 0.774 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.920 -1.045 20.861 21.090 hybrid contribution -2.103 -0.852 0.834 2.417 sum 0.817 -1.897 21.695 21.793 Atomic orbital electron populations 1.22427 0.95900 1.02219 1.02546 1.22467 0.93731 0.99049 0.88640 0.89387 1.22876 0.97809 0.99415 0.97609 1.22763 0.98139 1.00244 0.95207 1.22639 0.95653 0.91282 0.94061 0.93390 1.21846 0.95824 1.01993 0.99447 1.63401 1.20287 1.23408 1.15540 1.22311 0.94268 1.01113 0.92557 1.20464 0.86236 0.78645 0.85956 1.90681 1.18227 1.54727 1.75170 1.46118 1.17421 1.54632 1.20200 1.22181 0.98099 0.99893 0.82005 1.21331 0.95099 0.96135 0.86970 1.43523 1.64974 1.16157 1.03909 1.18747 0.98739 1.21951 1.00824 0.89759 1.25504 0.97533 0.96480 0.96543 1.69863 1.27199 1.16743 1.39402 0.86958 0.84297 0.80110 0.78142 1.21360 1.22750 1.19044 1.21148 0.98545 0.87215 0.91868 1.23120 0.93791 1.03562 1.02782 1.23332 0.98260 0.96379 1.08020 0.92264 0.91950 0.91618 0.91447 0.90779 0.91007 0.90445 0.91638 0.93821 0.90975 0.87399 0.92495 0.77448 0.90649 0.92310 0.93602 0.92252 0.92525 0.88805 0.88052 0.90488 0.90802 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 7.81 37.16 0.29 -1.03 16 2 C 0.07 0.64 4.02 -66.73 -0.27 0.37 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.14 -1.08 6.47 -24.91 -0.16 -1.24 16 5 C -0.13 -1.12 6.49 -24.59 -0.16 -1.28 16 6 C 0.07 0.82 2.83 -66.18 -0.19 0.63 16 7 H 0.05 0.54 7.59 -51.93 -0.39 0.15 16 8 C -0.13 -1.77 8.19 37.16 0.30 -1.47 16 9 N -0.50 -6.05 4.52 -216.95 -0.98 -7.03 16 10 C 0.03 0.34 4.16 -4.98 -0.02 0.32 16 11 C 0.50 7.90 7.07 -10.99 -0.08 7.82 16 12 O -0.51 -9.97 13.05 5.55 0.07 -9.90 16 13 N -0.73 -11.28 5.56 -60.30 -0.33 -11.61 16 14 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 15 C 0.13 2.63 4.66 -4.04 -0.02 2.61 16 16 N -0.57 -12.93 2.41 -165.66 -0.40 -13.33 16 17 C -0.27 -7.37 9.03 -15.06 -0.14 -7.51 16 18 H 0.08 2.47 6.59 -52.48 -0.35 2.13 16 19 C 0.04 1.14 5.30 -17.43 -0.09 1.05 16 20 N -0.89 -26.57 13.97 55.49 0.78 -25.79 16 21 Si 0.88 21.18 25.07 -169.99 -4.26 16.92 16 22 H -0.29 -6.56 6.68 56.52 0.38 -6.18 16 23 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.12 2.39 6.60 -67.93 -0.45 1.94 16 26 C -0.19 -3.67 9.86 -26.69 -0.26 -3.94 16 27 C -0.22 -4.14 10.20 -26.69 -0.27 -4.41 16 28 H 0.06 0.44 6.66 -51.93 -0.35 0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.52 6.71 -51.93 -0.35 0.17 16 31 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.07 1.15 5.62 -51.93 -0.29 0.86 16 38 H 0.11 1.16 6.08 -51.93 -0.32 0.84 16 39 H 0.06 0.55 6.76 -51.93 -0.35 0.20 16 40 H 0.39 4.95 8.47 -40.82 -0.35 4.61 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.06 1.30 3.39 -51.93 -0.18 1.12 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 47 H 0.10 2.17 6.37 -51.93 -0.33 1.84 16 48 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -31.32 378.38 -9.68 -41.00 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.72 Total: 8.24 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.53 Total: -4.20 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.94 Total: -57.76 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.26 Total: 16.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.32 -9.68 -41.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691237103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.144 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds