Wall clock time and date at job start Fri Apr 10 2020 18:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.01006 * 2 1 4 4 C 1.54320 * 109.88714 * 121.11530 * 2 1 3 5 5 C 1.55140 * 103.01692 * 141.69081 * 4 2 1 6 6 C 1.54913 * 101.65341 * 324.34247 * 5 4 2 7 7 H 1.08992 * 110.37335 * 278.24152 * 6 5 4 8 8 C 1.52998 * 110.37203 * 155.89944 * 6 5 4 9 9 N 1.47441 * 109.88666 * 238.88554 * 2 1 3 10 10 C 1.46894 * 111.00359 * 3.85341 * 9 2 1 11 11 C 1.50703 * 109.47569 * 168.10764 * 10 9 2 12 12 O 1.21290 * 119.99230 * 342.95715 * 11 10 9 13 13 N 1.34768 * 120.00523 * 162.96608 * 11 10 9 14 14 C 1.46497 * 120.00326 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47398 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.47156 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00537 * 269.99886 * 16 15 14 18 18 H 1.08004 * 119.99551 * 141.15606 * 17 16 15 19 19 C 1.38811 * 119.99667 * 321.16675 * 17 16 15 20 20 N 1.31621 * 119.99595 * 158.23906 * 19 17 16 21 21 Si 1.86793 * 120.00362 * 338.23089 * 19 17 16 22 22 H 1.48502 * 109.47113 * 95.26870 * 21 19 17 23 23 H 1.48504 * 109.47322 * 215.27267 * 21 19 17 24 24 H 1.48507 * 109.47045 * 335.27395 * 21 19 17 25 25 C 1.46502 * 119.99638 * 90.00614 * 16 15 14 26 26 C 1.53007 * 117.49621 * 192.90822 * 25 16 15 27 27 C 1.53000 * 117.50263 * 124.24720 * 25 16 15 28 28 H 1.09003 * 109.47233 * 174.76466 * 1 2 3 29 29 H 1.09000 * 109.47455 * 294.76443 * 1 2 3 30 30 H 1.09002 * 109.47490 * 54.76412 * 1 2 3 31 31 H 1.08997 * 110.70737 * 23.30747 * 4 2 1 32 32 H 1.08999 * 110.70549 * 260.07177 * 4 2 1 33 33 H 1.09002 * 110.98948 * 206.25481 * 5 4 2 34 34 H 1.08996 * 110.99275 * 82.44075 * 5 4 2 35 35 H 1.09001 * 109.47213 * 290.15570 * 8 6 5 36 36 H 1.09001 * 109.47272 * 50.15327 * 8 6 5 37 37 H 1.08994 * 109.47109 * 170.15666 * 8 6 5 38 38 H 1.08995 * 109.47118 * 48.10022 * 10 9 2 39 39 H 1.09003 * 109.47006 * 288.09948 * 10 9 2 40 40 H 0.97003 * 119.99776 * 359.97438 * 13 11 10 41 41 H 1.09001 * 109.47193 * 299.99517 * 14 13 11 42 42 H 1.09001 * 109.47386 * 59.99402 * 14 13 11 43 43 H 1.09000 * 109.47406 * 299.99914 * 15 14 13 44 44 H 1.09002 * 109.47405 * 59.99901 * 15 14 13 45 45 H 0.97001 * 119.99562 * 179.97438 * 20 19 17 46 46 H 1.08998 * 115.54894 * 338.57163 * 25 16 15 47 47 H 1.08996 * 117.50132 * 359.97438 * 26 25 16 48 48 H 1.09002 * 117.49612 * 145.01893 * 26 25 16 49 49 H 1.08994 * 117.49881 * 214.97681 * 27 25 16 50 50 H 1.09000 * 117.49860 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0243 0.0000 4 6 2.0549 -0.7499 1.2424 5 6 3.2891 -1.5134 0.6941 6 6 2.8188 -1.8834 -0.7348 7 1 2.1939 -2.7760 -0.7094 8 6 4.0236 -2.1010 -1.6524 9 7 2.0315 -0.7165 -1.1870 10 6 0.9240 -1.1339 -2.0570 11 6 1.4727 -1.5951 -3.3826 12 8 2.6035 -1.2996 -3.7066 13 7 0.7069 -2.3357 -4.2081 14 6 1.2401 -2.7835 -5.4970 15 6 0.1764 -3.6006 -6.2329 16 7 0.7095 -4.0480 -7.5221 17 6 0.5523 -3.2674 -8.6361 18 1 1.3528 -3.1872 -9.3567 19 6 -0.6359 -2.5790 -8.8392 20 7 -0.6602 -1.5273 -9.6302 21 14 -2.2003 -3.1452 -7.9900 22 1 -2.3882 -2.3755 -6.7340 23 1 -3.3611 -2.9183 -8.8880 24 1 -2.0954 -4.5922 -7.6726 25 6 1.4107 -5.3306 -7.6194 26 6 2.2018 -5.6078 -8.8994 27 6 0.8871 -6.3467 -8.6364 28 1 -0.3634 -1.0234 -0.0938 29 1 -0.3634 0.4305 0.9331 30 1 -0.3634 0.5929 -0.8394 31 1 1.3055 -1.4472 1.6169 32 1 2.3513 -0.0465 2.0204 33 1 3.4881 -2.4084 1.2836 34 1 4.1657 -0.8665 0.6615 35 1 4.5155 -1.1463 -1.8388 36 1 4.7256 -2.7843 -1.1745 37 1 3.6879 -2.5273 -2.5977 38 1 0.2496 -0.2924 -2.2158 39 1 0.3795 -1.9518 -1.5849 40 1 -0.1974 -2.5722 -3.9488 41 1 1.5131 -1.9164 -6.0984 42 1 2.1220 -3.4021 -5.3302 43 1 -0.0962 -4.4678 -5.6315 44 1 -0.7057 -2.9824 -6.3998 45 1 -1.4905 -1.0465 -9.7724 46 1 1.8152 -5.7173 -6.6841 47 1 2.2001 -4.8362 -9.6692 48 1 3.1264 -6.1774 -8.8061 49 1 0.9475 -7.4019 -8.3703 50 1 0.0207 -6.0611 -9.2328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691237103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:11 Heat of formation + Delta-G solvation = 8.292801 kcal Electronic energy + Delta-G solvation = -26677.260141 eV Core-core repulsion = 23126.595958 eV Total energy + Delta-G solvation = -3550.664183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30573 -39.75629 -38.95367 -36.33706 -34.95188 -33.96651 -33.30101 -32.89562 -29.90907 -29.00275 -27.38805 -26.05356 -24.77678 -23.81527 -22.96259 -21.90490 -21.72287 -21.45253 -20.11750 -18.72322 -17.96518 -17.54419 -17.35588 -16.92413 -16.71640 -16.37526 -16.06979 -15.59824 -15.25701 -14.98555 -14.77491 -14.47297 -14.11617 -14.07214 -13.78206 -13.70356 -13.56001 -13.45918 -13.23567 -13.08224 -12.67383 -12.62492 -12.53257 -12.23008 -12.14831 -12.10511 -11.84566 -11.75517 -11.59663 -11.56578 -11.38515 -11.33761 -11.01656 -10.68865 -10.64016 -9.95094 -9.22025 -8.66861 -8.22309 -5.64903 1.26204 1.41319 1.52962 1.73749 2.09731 2.39323 2.93544 3.04828 3.24408 3.35606 3.66513 3.70554 3.92086 4.04942 4.10734 4.19686 4.22726 4.24821 4.27488 4.37119 4.39667 4.45986 4.46633 4.47899 4.56999 4.57724 4.76469 4.82362 4.84980 4.91785 4.95214 4.99533 5.00690 5.01735 5.13010 5.15998 5.21090 5.28670 5.30136 5.44047 5.44988 5.53936 5.59043 5.92061 6.04289 6.12997 6.19104 6.68605 6.95060 7.39673 7.58052 7.96935 8.96706 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.003346 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.241455 B = 8366.392056 C = 9230.216608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 H 0.079 0.921 4 C -0.130 4.130 5 C -0.121 4.121 6 C 0.069 3.931 7 H 0.054 0.946 8 C -0.126 4.126 9 N -0.529 5.529 10 C 0.039 3.961 11 C 0.497 3.503 12 O -0.557 6.557 13 N -0.721 5.721 14 C 0.123 3.877 15 C 0.132 3.868 16 N -0.582 5.582 17 C -0.261 4.261 18 H 0.040 0.960 19 C -0.019 4.019 20 N -0.947 5.947 21 Si 0.943 3.057 22 H -0.262 1.262 23 H -0.311 1.311 24 H -0.252 1.252 25 C 0.106 3.894 26 C -0.197 4.197 27 C -0.205 4.205 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.411 0.589 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.263 0.737 46 H 0.130 0.870 47 H 0.063 0.937 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -3.882 25.481 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.042 4.042 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.159 4.159 6 C -0.038 4.038 7 H 0.072 0.928 8 C -0.184 4.184 9 N -0.255 5.255 10 C -0.092 4.092 11 C 0.284 3.716 12 O -0.434 6.434 13 N -0.376 5.376 14 C -0.003 4.003 15 C 0.007 3.993 16 N -0.301 5.301 17 C -0.391 4.391 18 H 0.058 0.942 19 C -0.216 4.216 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.189 1.189 23 H -0.240 1.240 24 H -0.176 1.176 25 C -0.001 4.001 26 C -0.236 4.236 27 C -0.246 4.246 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.247 0.753 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.148 0.852 47 H 0.082 0.918 48 H 0.129 0.871 49 H 0.131 0.869 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.475 -3.197 24.879 25.126 hybrid contribution -1.479 -0.180 -0.450 1.556 sum -0.004 -3.377 24.428 24.661 Atomic orbital electron populations 1.22386 0.94371 1.02693 1.03229 1.22520 0.95010 0.98416 0.88213 0.90281 1.22852 0.97325 0.99558 0.97080 1.22737 0.98417 1.01010 0.93774 1.22633 0.94817 0.91487 0.94903 0.92785 1.21740 0.97133 1.00747 0.98799 1.63281 1.21040 1.24055 1.17097 1.22290 0.94276 1.02452 0.90212 1.21302 0.85591 0.77601 0.87105 1.90676 1.20314 1.56174 1.76269 1.45940 1.18306 1.54568 1.18754 1.21670 0.97986 0.97657 0.83027 1.21394 0.94338 0.97432 0.86183 1.43626 1.65522 1.17255 1.03721 1.18538 0.97474 1.21773 1.01306 0.94191 1.26171 1.00910 0.96394 0.98086 1.70014 1.27831 1.18611 1.42601 0.85851 0.79091 0.80367 0.77611 1.18866 1.24013 1.17555 1.21518 0.98712 0.86237 0.93634 1.23092 0.95702 1.03235 1.01542 1.23309 0.96671 0.98147 1.06424 0.91564 0.90406 0.92100 0.90119 0.89412 0.89329 0.91226 0.94028 0.92162 0.94009 0.86133 0.89493 0.75324 0.95558 0.92483 0.89577 0.93778 0.92762 0.85224 0.91820 0.87127 0.86863 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 7.81 71.98 0.56 -1.44 16 2 C 0.07 1.06 4.02 45.26 0.18 1.24 16 3 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 4 C -0.13 -1.59 6.47 31.78 0.21 -1.38 16 5 C -0.12 -1.86 6.49 31.98 0.21 -1.65 16 6 C 0.07 1.47 2.83 45.39 0.13 1.60 16 7 H 0.05 1.08 7.59 -2.39 -0.02 1.06 16 8 C -0.13 -3.37 8.19 71.98 0.59 -2.78 16 9 N -0.53 -11.94 4.52 -840.31 -3.80 -15.74 16 10 C 0.04 0.82 4.16 85.56 0.36 1.18 16 11 C 0.50 15.28 7.07 87.66 0.62 15.90 16 12 O -0.56 -22.24 13.05 -3.06 -0.04 -22.28 16 13 N -0.72 -21.21 5.56 -463.07 -2.57 -23.78 16 14 C 0.12 4.65 6.00 86.38 0.52 5.17 16 15 C 0.13 5.06 4.66 86.38 0.40 5.46 16 16 N -0.58 -26.32 2.41 -678.02 -1.64 -27.95 16 17 C -0.26 -14.60 9.03 84.03 0.76 -13.84 16 18 H 0.04 2.54 6.59 -2.91 -0.02 2.52 16 19 C -0.02 -1.08 5.30 84.86 0.45 -0.63 16 20 N -0.95 -59.16 13.97 21.65 0.30 -58.86 16 21 Si 0.94 43.95 25.07 68.60 1.72 45.67 16 22 H -0.26 -11.11 6.68 99.48 0.66 -10.45 16 23 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 24 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 25 C 0.11 3.99 6.60 44.99 0.30 4.29 16 26 C -0.20 -7.35 9.86 30.62 0.30 -7.05 16 27 C -0.21 -7.30 10.20 30.62 0.31 -6.99 16 28 H 0.07 0.70 6.66 -2.39 -0.02 0.69 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.79 6.71 -2.39 -0.02 0.77 16 31 H 0.08 0.81 7.85 -2.39 -0.02 0.79 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 37 H 0.04 1.36 5.62 -2.39 -0.01 1.35 16 38 H 0.12 2.29 6.08 -2.39 -0.01 2.27 16 39 H 0.09 1.35 6.76 -2.39 -0.02 1.33 16 40 H 0.41 9.11 8.47 -92.71 -0.79 8.32 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 44 H 0.04 1.84 3.39 -2.39 -0.01 1.83 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 47 H 0.06 2.87 6.37 -2.39 -0.02 2.85 16 48 H 0.11 3.34 8.14 -2.39 -0.02 3.33 16 49 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 50 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.73 378.38 -0.04 -73.77 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.09 Total: 30.10 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.89 Total: -0.93 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -7.70 Total: -126.33 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.04 Total: -22.28 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.72 Total: 45.67 kcal Total: -73.73 -0.04 -73.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691237103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.066 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds