Wall clock time and date at job start Fri Apr 10 2020 18:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47382 * 2 1 4 4 N 1.46507 * 109.46891 * 240.00402 * 2 1 3 5 5 C 1.34776 * 120.00075 * 84.99911 * 4 2 1 6 6 O 1.21284 * 119.99624 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00283 * 180.02562 * 5 4 2 8 8 C 1.54962 * 110.92590 * 66.53405 * 7 5 4 9 9 C 1.54261 * 104.16061 * 156.29583 * 8 7 5 10 10 C 1.53872 * 106.64150 * 336.44979 * 9 8 7 11 11 C 1.54266 * 106.59779 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47492 * 120.00936 * 2 1 3 13 13 O 1.21277 * 120.01033 * 120.00024 * 12 2 1 14 14 N 1.34780 * 119.99633 * 299.99508 * 12 2 1 15 15 C 1.47066 * 136.05625 * 359.62823 * 14 12 2 16 16 C 1.53242 * 88.08439 * 207.20525 * 15 14 12 17 17 O 1.42895 * 114.19612 * 87.72836 * 16 15 14 18 18 C 1.50699 * 114.32467 * 220.46995 * 16 15 14 19 19 H 1.08009 * 119.99587 * 99.24077 * 18 16 15 20 20 C 1.37874 * 120.00654 * 279.23823 * 18 16 15 21 21 N 1.31512 * 119.99345 * 10.18689 * 20 18 16 22 22 Si 1.86792 * 120.00400 * 190.19155 * 20 18 16 23 23 H 1.48501 * 109.47571 * 84.99392 * 22 20 18 24 24 H 1.48501 * 109.47357 * 204.99210 * 22 20 18 25 25 H 1.48502 * 109.47112 * 324.99299 * 22 20 18 26 26 C 1.47074 * 136.05798 * 180.02562 * 14 12 2 27 27 H 1.08998 * 109.46852 * 299.99419 * 1 2 3 28 28 H 1.09000 * 109.47373 * 59.99749 * 1 2 3 29 29 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99917 * 264.99895 * 4 2 1 31 31 H 1.09001 * 110.67055 * 303.23259 * 7 5 4 32 32 H 1.09000 * 110.47409 * 37.64894 * 8 7 5 33 33 H 1.08992 * 110.53428 * 274.98167 * 8 7 5 34 34 H 1.08999 * 110.03887 * 217.13552 * 9 8 7 35 35 H 1.09006 * 110.03075 * 95.75806 * 9 8 7 36 36 H 1.09004 * 110.03379 * 119.25377 * 10 9 8 37 37 H 1.08996 * 110.03632 * 240.63614 * 10 9 8 38 38 H 1.09003 * 110.48970 * 142.29170 * 11 10 9 39 39 H 1.09006 * 110.48369 * 264.79613 * 11 10 9 40 40 H 1.09003 * 113.47277 * 321.94044 * 15 14 12 41 41 H 1.09006 * 113.46569 * 92.37809 * 15 14 12 42 42 H 0.96707 * 113.99911 * 90.31500 * 17 16 15 43 43 H 0.97004 * 120.00099 * 180.02562 * 21 20 18 44 44 H 1.08997 * 113.46645 * 267.61865 * 26 14 12 45 45 H 1.08995 * 113.46853 * 38.00841 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6487 -0.7286 -3.5879 8 6 1.6330 -1.7986 -4.0621 9 6 1.9469 -1.9786 -5.5616 10 6 2.6335 -0.6825 -6.0268 11 6 2.7127 0.2413 -4.7938 12 6 2.0324 -0.7106 1.2303 13 8 2.7297 -1.6966 1.1190 14 7 1.7069 -0.2502 2.4545 15 6 0.9214 0.8722 2.9893 16 6 1.8036 0.8258 4.2414 17 8 2.9944 1.6103 4.1483 18 6 1.0569 1.0278 5.5348 19 1 0.7806 0.1753 6.1376 20 6 0.7265 2.3008 5.9486 21 7 0.8802 3.3188 5.1303 22 14 0.0606 2.5796 7.6714 23 1 1.1921 2.7174 8.6232 24 1 -0.7570 3.8191 7.6916 25 1 -0.7828 1.4238 8.0691 26 6 1.9867 -0.6451 3.8433 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6317 -1.1528 31 1 3.6239 -1.1784 -3.4018 32 1 0.6120 -1.4417 -3.9263 33 1 1.7854 -2.7348 -3.5253 34 1 1.0239 -2.1335 -6.1204 35 1 2.6160 -2.8273 -5.7038 36 1 3.6361 -0.9020 -6.3938 37 1 2.0442 -0.2088 -6.8119 38 1 3.6527 0.7930 -4.7902 39 1 1.8675 0.9294 -4.7778 40 1 1.0326 1.7923 2.4156 41 1 -0.1210 0.6191 3.1831 42 1 2.8909 2.5206 4.4576 43 1 0.6481 4.2145 5.4215 44 1 1.2311 -1.3067 4.2670 45 1 3.0014 -1.0133 3.9938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331579887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:04 Heat of formation + Delta-G solvation = -100.778307 kcal Electronic energy + Delta-G solvation = -26207.725627 eV Core-core repulsion = 22418.780010 eV Total energy + Delta-G solvation = -3788.945617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40293 -39.57159 -37.86214 -37.11866 -34.75965 -34.13219 -32.34565 -31.34269 -29.22297 -28.88710 -28.29276 -25.60516 -25.14608 -24.06872 -21.99365 -20.50803 -20.09595 -19.95484 -18.57189 -17.69494 -17.23077 -16.50086 -16.14397 -15.63122 -15.42623 -15.15009 -14.93805 -14.65222 -14.27640 -13.93339 -13.56192 -13.55407 -13.32945 -13.01143 -12.58211 -12.43745 -12.30274 -12.04871 -11.92812 -11.78069 -11.52700 -11.47430 -11.34486 -11.31085 -11.09380 -11.00108 -10.98041 -10.66114 -10.55317 -10.33142 -9.76106 -9.67230 -9.25191 -9.03134 -8.91368 -8.43085 -7.96396 -6.43773 -4.53455 2.63143 2.94847 3.04227 3.13478 3.21891 3.23667 3.61901 4.16099 4.25101 4.34299 4.52030 4.71948 4.83446 5.01086 5.12048 5.18694 5.23583 5.27172 5.30924 5.34213 5.41349 5.43463 5.58960 5.68175 5.73663 5.79627 5.82124 5.92858 5.96004 6.04767 6.09046 6.14620 6.20883 6.33055 6.39308 6.48680 6.56808 6.69129 7.01580 7.55490 7.57362 7.73216 8.23872 8.36716 8.49873 8.58720 9.17638 9.20454 10.62456 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.002717 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.343962 B =10304.133295 C =10580.952128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.111 0.889 4 N -0.710 5.710 5 C 0.523 3.477 6 O -0.541 6.541 7 C -0.115 4.115 8 C -0.113 4.113 9 C -0.123 4.123 10 C -0.126 4.126 11 C -0.105 4.105 12 C 0.533 3.467 13 O -0.565 6.565 14 N -0.629 5.629 15 C 0.078 3.922 16 C 0.239 3.761 17 O -0.566 6.566 18 C -0.541 4.541 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.888 5.888 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.271 1.271 26 C 0.109 3.891 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.408 0.592 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.387 0.613 43 H 0.272 0.728 44 H 0.088 0.912 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -7.170 -15.873 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.129 0.871 4 N -0.363 5.363 5 C 0.309 3.691 6 O -0.418 6.418 7 C -0.136 4.136 8 C -0.151 4.151 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.143 4.143 12 C 0.322 3.678 13 O -0.446 6.446 14 N -0.362 5.362 15 C -0.045 4.045 16 C 0.197 3.803 17 O -0.375 6.375 18 C -0.579 4.579 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.525 5.525 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.013 4.013 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.244 0.756 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.239 0.761 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.334 -7.261 -16.427 17.964 hybrid contribution -0.538 0.335 1.161 1.323 sum -0.872 -6.926 -15.267 16.787 Atomic orbital electron populations 1.22105 0.92970 1.02660 1.03749 1.20638 0.95595 0.98122 0.83392 0.87083 1.45808 1.67150 1.14734 1.08563 1.20523 0.77265 0.87139 0.84190 1.90700 1.50098 1.15968 1.85017 1.22324 1.00760 0.97530 0.92985 1.22353 0.98785 0.97868 0.96128 1.22118 1.00649 0.97954 0.95344 1.22159 1.00710 0.95598 0.97870 1.22225 1.03337 0.97009 0.91694 1.19897 0.80680 0.83973 0.83282 1.90617 1.40290 1.27540 1.86125 1.49688 1.50652 1.31544 1.04281 1.24157 0.96960 0.87335 0.96011 1.19476 0.83049 0.86312 0.91426 1.86090 1.34774 1.28657 1.87994 1.21317 1.37405 0.93458 1.05765 0.90909 1.25085 0.94177 0.95854 0.97952 1.69761 1.47621 1.00206 1.34943 0.86410 0.78968 0.77862 0.83671 1.20134 1.21037 1.19622 1.23345 1.00858 0.99300 0.77785 0.90344 0.91235 0.92191 0.75567 0.87960 0.91033 0.90832 0.91601 0.91582 0.91746 0.91611 0.91230 0.90126 0.91257 0.89729 0.76132 0.91778 0.89408 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.37 37.16 0.35 -1.91 16 2 C 0.13 2.16 2.86 -69.08 -0.20 1.97 16 3 H 0.11 2.02 7.58 -51.93 -0.39 1.63 16 4 N -0.71 -10.22 4.95 -54.93 -0.27 -10.49 16 5 C 0.52 7.39 7.11 -10.99 -0.08 7.31 16 6 O -0.54 -9.51 15.39 5.55 0.09 -9.42 16 7 C -0.11 -1.19 3.28 -89.74 -0.29 -1.48 16 8 C -0.11 -0.96 6.28 -25.04 -0.16 -1.12 16 9 C -0.12 -0.88 6.80 -25.62 -0.17 -1.05 16 10 C -0.13 -0.96 6.80 -25.61 -0.17 -1.13 16 11 C -0.10 -1.04 5.90 -25.08 -0.15 -1.19 16 12 C 0.53 10.41 7.47 -10.99 -0.08 10.33 16 13 O -0.56 -12.10 16.61 5.56 0.09 -12.01 16 14 N -0.63 -12.79 3.64 -185.36 -0.67 -13.46 16 15 C 0.08 1.62 6.14 -8.63 -0.05 1.57 16 16 C 0.24 5.52 1.40 -91.40 -0.13 5.39 16 17 O -0.57 -14.00 13.56 -35.23 -0.48 -14.48 16 18 C -0.54 -13.06 8.65 -34.44 -0.30 -13.36 16 19 H 0.07 1.71 7.84 -52.48 -0.41 1.30 16 20 C 0.07 1.77 5.20 -17.82 -0.09 1.68 16 21 N -0.89 -21.89 11.81 55.43 0.65 -21.23 16 22 Si 0.90 18.96 29.55 -169.99 -5.02 13.93 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C 0.11 2.29 8.03 -8.50 -0.07 2.22 16 27 H 0.08 1.16 6.35 -51.93 -0.33 0.83 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.41 5.43 7.79 -40.82 -0.32 5.11 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.93 7.45 -51.93 -0.39 0.54 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.68 8.05 -51.93 -0.42 1.26 16 42 H 0.39 9.58 7.09 45.56 0.32 9.91 16 43 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 44 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -28.30 368.29 -8.22 -36.52 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -6.56 Total: 15.87 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -1.60 Total: 9.22 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.29 Total: -45.19 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.30 Total: -35.91 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.30 -8.22 -36.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331579887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.257 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds