Wall clock time and date at job start Fri Apr 10 2020 18:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47382 * 2 1 4 4 N 1.46507 * 109.46891 * 240.00402 * 2 1 3 5 5 C 1.34776 * 120.00075 * 84.99911 * 4 2 1 6 6 O 1.21284 * 119.99624 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00283 * 180.02562 * 5 4 2 8 8 C 1.54962 * 110.92590 * 66.53405 * 7 5 4 9 9 C 1.54261 * 104.16061 * 156.29583 * 8 7 5 10 10 C 1.53872 * 106.64150 * 336.44979 * 9 8 7 11 11 C 1.54266 * 106.59779 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47492 * 120.00936 * 2 1 3 13 13 O 1.21277 * 120.01033 * 120.00024 * 12 2 1 14 14 N 1.34780 * 119.99633 * 299.99508 * 12 2 1 15 15 C 1.47066 * 136.05625 * 359.62823 * 14 12 2 16 16 C 1.53242 * 88.08439 * 207.20525 * 15 14 12 17 17 O 1.42895 * 114.19612 * 87.72836 * 16 15 14 18 18 C 1.50699 * 114.32467 * 220.46995 * 16 15 14 19 19 H 1.08009 * 119.99587 * 99.24077 * 18 16 15 20 20 C 1.37874 * 120.00654 * 279.23823 * 18 16 15 21 21 N 1.31512 * 119.99345 * 10.18689 * 20 18 16 22 22 Si 1.86792 * 120.00400 * 190.19155 * 20 18 16 23 23 H 1.48501 * 109.47571 * 84.99392 * 22 20 18 24 24 H 1.48501 * 109.47357 * 204.99210 * 22 20 18 25 25 H 1.48502 * 109.47112 * 324.99299 * 22 20 18 26 26 C 1.47074 * 136.05798 * 180.02562 * 14 12 2 27 27 H 1.08998 * 109.46852 * 299.99419 * 1 2 3 28 28 H 1.09000 * 109.47373 * 59.99749 * 1 2 3 29 29 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99917 * 264.99895 * 4 2 1 31 31 H 1.09001 * 110.67055 * 303.23259 * 7 5 4 32 32 H 1.09000 * 110.47409 * 37.64894 * 8 7 5 33 33 H 1.08992 * 110.53428 * 274.98167 * 8 7 5 34 34 H 1.08999 * 110.03887 * 217.13552 * 9 8 7 35 35 H 1.09006 * 110.03075 * 95.75806 * 9 8 7 36 36 H 1.09004 * 110.03379 * 119.25377 * 10 9 8 37 37 H 1.08996 * 110.03632 * 240.63614 * 10 9 8 38 38 H 1.09003 * 110.48970 * 142.29170 * 11 10 9 39 39 H 1.09006 * 110.48369 * 264.79613 * 11 10 9 40 40 H 1.09003 * 113.47277 * 321.94044 * 15 14 12 41 41 H 1.09006 * 113.46569 * 92.37809 * 15 14 12 42 42 H 0.96707 * 113.99911 * 90.31500 * 17 16 15 43 43 H 0.97004 * 120.00099 * 180.02562 * 21 20 18 44 44 H 1.08997 * 113.46645 * 267.61865 * 26 14 12 45 45 H 1.08995 * 113.46853 * 38.00841 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6487 -0.7286 -3.5879 8 6 1.6330 -1.7986 -4.0621 9 6 1.9469 -1.9786 -5.5616 10 6 2.6335 -0.6825 -6.0268 11 6 2.7127 0.2413 -4.7938 12 6 2.0324 -0.7106 1.2303 13 8 2.7297 -1.6966 1.1190 14 7 1.7069 -0.2502 2.4545 15 6 0.9214 0.8722 2.9893 16 6 1.8036 0.8258 4.2414 17 8 2.9944 1.6103 4.1483 18 6 1.0569 1.0278 5.5348 19 1 0.7806 0.1753 6.1376 20 6 0.7265 2.3008 5.9486 21 7 0.8802 3.3188 5.1303 22 14 0.0606 2.5796 7.6714 23 1 1.1921 2.7174 8.6232 24 1 -0.7570 3.8191 7.6916 25 1 -0.7828 1.4238 8.0691 26 6 1.9867 -0.6451 3.8433 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6317 -1.1528 31 1 3.6239 -1.1784 -3.4018 32 1 0.6120 -1.4417 -3.9263 33 1 1.7854 -2.7348 -3.5253 34 1 1.0239 -2.1335 -6.1204 35 1 2.6160 -2.8273 -5.7038 36 1 3.6361 -0.9020 -6.3938 37 1 2.0442 -0.2088 -6.8119 38 1 3.6527 0.7930 -4.7902 39 1 1.8675 0.9294 -4.7778 40 1 1.0326 1.7923 2.4156 41 1 -0.1210 0.6191 3.1831 42 1 2.8909 2.5206 4.4576 43 1 0.6481 4.2145 5.4215 44 1 1.2311 -1.3067 4.2670 45 1 3.0014 -1.0133 3.9938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331579887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:03 Heat of formation + Delta-G solvation = -120.474447 kcal Electronic energy + Delta-G solvation = -26208.579716 eV Core-core repulsion = 22418.780010 eV Total energy + Delta-G solvation = -3789.799706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76826 -40.96718 -39.35458 -38.10612 -36.09166 -35.95898 -34.22299 -32.58567 -30.40214 -29.67436 -29.50532 -27.34261 -26.83352 -25.37865 -23.08501 -21.77446 -21.11362 -21.03022 -20.08300 -19.28677 -18.64593 -17.90315 -17.44283 -17.07135 -16.72464 -16.62216 -16.22946 -15.97630 -15.75525 -15.22938 -15.11571 -14.71478 -14.30721 -14.27006 -14.12365 -13.96979 -13.64492 -13.62386 -13.33425 -13.03527 -12.81404 -12.80267 -12.69074 -12.24460 -12.18186 -12.12067 -12.09542 -12.01226 -11.73299 -11.34108 -11.25480 -10.95990 -10.89069 -10.76288 -10.32773 -10.19812 -9.66254 -8.27049 -6.42425 1.41063 1.47441 1.48413 1.52232 1.58938 1.66595 2.23612 2.41725 2.94580 3.23670 3.46001 3.59796 3.65757 3.79971 3.94763 3.97897 4.10079 4.22400 4.41349 4.45851 4.49942 4.54950 4.57207 4.60344 4.61221 4.67415 4.77324 4.79385 4.87088 4.93191 4.94108 5.04457 5.10844 5.17121 5.21441 5.24991 5.29735 5.37204 5.49876 5.71220 5.88927 6.41950 6.63131 6.73932 6.94425 7.13066 7.27656 7.31244 8.78533 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.002717 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.343962 B =10304.133295 C =10580.952128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 H 0.092 0.908 4 N -0.705 5.705 5 C 0.521 3.479 6 O -0.580 6.580 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.107 4.107 12 C 0.532 3.468 13 O -0.583 6.583 14 N -0.630 5.630 15 C 0.094 3.906 16 C 0.217 3.783 17 O -0.579 6.579 18 C -0.555 4.555 19 H 0.076 0.924 20 C 0.036 3.964 21 N -0.908 5.908 22 Si 0.963 3.037 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.112 3.888 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.415 0.585 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.384 0.616 43 H 0.273 0.727 44 H 0.109 0.891 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 -8.605 -16.627 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.110 0.890 4 N -0.358 5.358 5 C 0.309 3.691 6 O -0.459 6.459 7 C -0.133 4.133 8 C -0.148 4.148 9 C -0.157 4.157 10 C -0.158 4.158 11 C -0.146 4.146 12 C 0.322 3.678 13 O -0.465 6.465 14 N -0.363 5.363 15 C -0.029 4.029 16 C 0.176 3.824 17 O -0.388 6.388 18 C -0.593 4.593 19 H 0.094 0.906 20 C -0.166 4.166 21 N -0.546 5.546 22 Si 0.789 3.211 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.010 4.010 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.253 0.747 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.234 0.766 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.926 -8.728 -17.194 19.305 hybrid contribution -0.302 0.792 1.395 1.632 sum -1.228 -7.936 -15.800 17.723 Atomic orbital electron populations 1.22029 0.91139 1.03601 1.03717 1.20495 0.96925 0.96777 0.82952 0.89010 1.45807 1.67045 1.14967 1.07968 1.21255 0.76223 0.86760 0.84857 1.90683 1.51813 1.17805 1.85597 1.22413 1.01921 0.97933 0.90986 1.22378 0.97562 0.97556 0.97349 1.22124 1.01369 0.98069 0.94127 1.22146 1.01718 0.95266 0.96717 1.22233 1.02245 0.97169 0.92911 1.20368 0.80067 0.83772 0.83632 1.90600 1.41016 1.28491 1.86415 1.49686 1.50720 1.31388 1.04483 1.23934 0.97166 0.87100 0.94699 1.19758 0.83034 0.87353 0.92228 1.86078 1.36046 1.28586 1.88109 1.21530 1.37605 0.93805 1.06385 0.90628 1.25718 0.94464 0.95658 1.00791 1.69834 1.48151 1.00439 1.36164 0.85488 0.78191 0.77692 0.79772 1.20411 1.21053 1.19030 1.23353 1.01078 0.98315 0.78287 0.90750 0.90843 0.90708 0.74693 0.86325 0.91961 0.89426 0.90767 0.90100 0.90490 0.91074 0.91564 0.92278 0.92320 0.88496 0.76581 0.91723 0.87280 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.37 71.98 0.67 -3.42 16 2 C 0.14 4.51 2.86 44.24 0.13 4.64 16 3 H 0.09 3.42 7.58 -2.39 -0.02 3.40 16 4 N -0.70 -19.82 4.95 -446.10 -2.21 -22.03 16 5 C 0.52 14.55 7.11 87.66 0.62 15.18 16 6 O -0.58 -20.73 15.39 -3.04 -0.05 -20.77 16 7 C -0.11 -2.16 3.28 -10.23 -0.03 -2.19 16 8 C -0.11 -1.64 6.28 31.69 0.20 -1.44 16 9 C -0.12 -1.37 6.80 31.32 0.21 -1.16 16 10 C -0.12 -1.58 6.80 31.32 0.21 -1.37 16 11 C -0.11 -2.06 5.90 31.67 0.19 -1.87 16 12 C 0.53 20.51 7.47 87.65 0.65 21.16 16 13 O -0.58 -24.55 16.61 -3.02 -0.05 -24.60 16 14 N -0.63 -25.36 3.64 -859.21 -3.13 -28.49 16 15 C 0.09 3.87 6.14 83.10 0.51 4.38 16 16 C 0.22 10.02 1.40 -11.30 -0.02 10.01 16 17 O -0.58 -29.09 13.56 -148.98 -2.02 -31.11 16 18 C -0.56 -26.49 8.65 25.60 0.22 -26.27 16 19 H 0.08 3.48 7.84 -2.91 -0.02 3.46 16 20 C 0.04 1.71 5.20 84.65 0.44 2.15 16 21 N -0.91 -44.75 11.81 21.45 0.25 -44.49 16 22 Si 0.96 38.34 29.55 68.60 2.03 40.37 16 23 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 26 C 0.11 4.63 8.03 83.18 0.67 5.30 16 27 H 0.07 2.14 6.35 -2.39 -0.02 2.12 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.42 10.52 7.79 -92.71 -0.72 9.80 16 31 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.05 8.05 -2.39 -0.02 1.03 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 0.83 8.14 -2.38 -0.02 0.82 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.38 7.45 -2.38 -0.02 1.36 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.10 3.76 8.05 -2.38 -0.02 3.74 16 42 H 0.38 19.41 7.09 -74.05 -0.53 18.89 16 43 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 44 H 0.11 4.01 8.10 -2.39 -0.02 3.99 16 45 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -59.82 368.29 -0.73 -60.55 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -0.24 Total: 45.48 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 4.68 Total: 25.09 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -5.08 Total: -95.01 kcal Atomic # 8 Polarization: -74.37 SS G_CDS: -2.12 Total: -76.49 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -59.82 -0.73 -60.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331579887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.922 kcal (2) G-P(sol) polarization free energy of solvation -59.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds