Wall clock time and date at job start Fri Apr 10 2020 18:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.46703 * 2 1 4 4 N 1.46497 * 109.47649 * 120.00009 * 2 1 3 5 5 C 1.34778 * 120.00133 * 275.00378 * 4 2 1 6 6 O 1.21285 * 119.99915 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00162 * 179.97438 * 5 4 2 8 8 C 1.54269 * 110.03194 * 297.90549 * 7 5 4 9 9 C 1.54960 * 104.16159 * 217.13823 * 8 7 5 10 10 C 1.54884 * 102.78008 * 37.88731 * 9 8 7 11 11 C 1.53874 * 110.03157 * 180.69362 * 7 5 4 12 12 C 1.50700 * 109.47509 * 240.00461 * 2 1 3 13 13 O 1.21283 * 119.99835 * 239.99881 * 12 2 1 14 14 N 1.34779 * 119.99936 * 59.99324 * 12 2 1 15 15 C 1.47066 * 136.05571 * 180.02562 * 14 12 2 16 16 C 1.53504 * 88.04678 * 207.12426 * 15 14 12 17 17 O 1.42902 * 114.20451 * 87.54970 * 16 15 14 18 18 C 1.50703 * 114.20523 * 220.37340 * 16 15 14 19 19 H 1.08004 * 119.99655 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99845 * 180.02562 * 18 16 15 21 21 N 1.31519 * 119.99837 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99979 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46773 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47248 * 119.99540 * 22 20 18 25 25 H 1.48504 * 109.46795 * 239.99520 * 22 20 18 26 26 C 1.47064 * 136.05768 * 0.05168 * 14 12 2 27 27 H 1.08997 * 109.47558 * 299.99581 * 1 2 3 28 28 H 1.08997 * 109.47992 * 60.00228 * 1 2 3 29 29 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00228 * 95.00118 * 4 2 1 31 31 H 1.08991 * 110.01634 * 59.29651 * 7 5 4 32 32 H 1.09005 * 110.48634 * 335.78715 * 8 7 5 33 33 H 1.09003 * 110.48764 * 98.42424 * 8 7 5 34 34 H 1.09001 * 110.72013 * 279.57143 * 9 8 7 35 35 H 1.09003 * 110.92428 * 156.29852 * 9 8 7 36 36 H 1.08992 * 110.49025 * 203.40642 * 10 9 8 37 37 H 1.09002 * 110.59679 * 80.81465 * 10 9 8 38 38 H 1.09004 * 110.02602 * 238.56735 * 11 7 5 39 39 H 1.08997 * 110.03327 * 359.97438 * 11 7 5 40 40 H 1.09002 * 113.46793 * 321.93398 * 15 14 12 41 41 H 1.08999 * 113.46805 * 92.31765 * 15 14 12 42 42 H 0.96697 * 113.99512 * 180.02562 * 17 16 15 43 43 H 0.97004 * 119.99468 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.47096 * 267.62545 * 26 14 12 45 45 H 1.09005 * 113.46966 * 38.00938 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6490 -0.7288 3.5877 8 6 1.6775 -1.8623 3.9766 9 6 1.6738 -1.8435 5.5261 10 6 1.7408 -0.3305 5.8505 11 6 2.6895 0.2447 4.7787 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1192 14 7 1.7067 -0.2498 -2.4546 15 6 1.9857 -0.6450 -3.8434 16 6 1.8028 0.8257 -4.2433 17 8 2.9927 1.6112 -4.1476 18 6 1.0553 1.0260 -5.5364 19 1 0.7007 0.1711 -6.0932 20 6 0.8240 2.3005 -6.0087 21 7 1.2554 3.3415 -5.3303 22 14 -0.1032 2.5489 -7.6112 23 1 -0.4783 1.2277 -8.1758 24 1 -1.3304 3.3447 -7.3548 25 1 0.7628 3.2718 -8.5771 26 6 0.9163 0.8692 -2.9893 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 2.2491 -1.6317 1.1526 31 1 3.6432 -1.1358 3.4040 32 1 0.6788 -1.6581 3.5904 33 1 2.0419 -2.8207 3.6067 34 1 2.5479 -2.3621 5.9201 35 1 0.7566 -2.2825 5.9185 36 1 2.1510 -0.1719 6.8478 37 1 0.7531 0.1233 5.7686 38 1 3.7035 0.3094 5.1735 39 1 2.3466 1.2311 4.4665 40 1 3.0006 -1.0130 -3.9945 41 1 1.2302 -1.3071 -4.2664 42 1 2.8739 2.5371 -4.3998 43 1 1.0923 4.2382 -5.6624 44 1 -0.1243 0.6111 -3.1853 45 1 1.0210 1.7888 -2.4134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331579891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:07 Heat of formation + Delta-G solvation = -119.031917 kcal Electronic energy + Delta-G solvation = -26269.484036 eV Core-core repulsion = 22479.746883 eV Total energy + Delta-G solvation = -3789.737153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79188 -41.01368 -39.35314 -38.03203 -36.10942 -35.95229 -34.13150 -32.60508 -30.42078 -29.67571 -29.46830 -27.35528 -26.84282 -25.36188 -22.95759 -21.77657 -21.46543 -20.88685 -20.00345 -19.29006 -18.67384 -17.90312 -17.50351 -17.08214 -16.75744 -16.48737 -16.26029 -15.93094 -15.83942 -15.27288 -15.10869 -14.69780 -14.47737 -14.22002 -14.11880 -13.96197 -13.60384 -13.46384 -13.32677 -12.86079 -12.78089 -12.75728 -12.66293 -12.28465 -12.22930 -12.15406 -12.02766 -11.94123 -11.66605 -11.41919 -11.38825 -11.03199 -10.87610 -10.67940 -10.34172 -10.22378 -9.65916 -8.27974 -6.44917 1.40643 1.46340 1.48219 1.51738 1.61151 1.66084 2.22703 2.40886 2.93862 3.22956 3.47605 3.64358 3.71432 3.76786 3.94275 3.97720 4.09961 4.22771 4.40544 4.46304 4.51928 4.53951 4.56747 4.60937 4.65729 4.68047 4.75015 4.80974 4.86003 4.89904 4.97948 5.03310 5.09395 5.20021 5.22663 5.23633 5.25124 5.42807 5.47527 5.72947 5.89498 6.41391 6.61749 6.73278 6.93660 7.12520 7.29123 7.46881 8.78388 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.002753 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.698384 B =10166.952330 C =10431.334318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.137 3.863 3 H 0.092 0.908 4 N -0.704 5.704 5 C 0.518 3.482 6 O -0.578 6.578 7 C -0.109 4.109 8 C -0.114 4.114 9 C -0.117 4.117 10 C -0.123 4.123 11 C -0.122 4.122 12 C 0.532 3.468 13 O -0.583 6.583 14 N -0.629 5.629 15 C 0.111 3.889 16 C 0.216 3.784 17 O -0.588 6.588 18 C -0.548 4.548 19 H 0.078 0.922 20 C 0.030 3.970 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.284 1.284 26 C 0.084 3.916 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.415 0.585 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.110 0.890 42 H 0.389 0.611 43 H 0.276 0.724 44 H 0.102 0.898 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -8.552 16.954 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.028 3.972 3 H 0.110 0.890 4 N -0.358 5.358 5 C 0.307 3.693 6 O -0.458 6.458 7 C -0.130 4.130 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.160 4.160 11 C -0.160 4.160 12 C 0.321 3.679 13 O -0.465 6.465 14 N -0.361 5.361 15 C -0.012 4.012 16 C 0.174 3.826 17 O -0.401 6.401 18 C -0.586 4.586 19 H 0.096 0.904 20 C -0.170 4.170 21 N -0.559 5.559 22 Si 0.796 3.204 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.210 1.210 26 C -0.039 4.039 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.253 0.747 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.245 0.755 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.231 -8.668 17.442 19.605 hybrid contribution -0.303 0.794 -1.300 1.553 sum -2.534 -7.874 16.142 18.138 Atomic orbital electron populations 1.22034 0.91070 1.03634 1.03761 1.20503 0.96970 0.96761 0.82920 0.89003 1.45776 1.67086 1.14974 1.07933 1.21319 0.76198 0.86800 0.85021 1.90660 1.51925 1.17838 1.85342 1.22049 1.02088 0.97480 0.91371 1.22413 0.98098 0.97059 0.97589 1.22507 1.03170 0.95888 0.93876 1.22362 0.99025 0.96015 0.98630 1.22186 1.01227 0.98694 0.93852 1.20380 0.80090 0.83772 0.83621 1.90604 1.41025 1.28501 1.86396 1.49619 1.50533 1.31448 1.04474 1.23375 1.01027 0.98474 0.78277 1.19891 0.83147 0.87493 0.92032 1.86031 1.35162 1.28103 1.90779 1.21676 1.36047 0.93608 1.07228 0.90382 1.25795 0.95499 0.95359 1.00367 1.69339 1.47042 0.99377 1.40187 0.85295 0.77953 0.78417 0.78687 1.18823 1.20331 1.21020 1.24139 0.97433 0.87404 0.94876 0.90855 0.90614 0.90709 0.74693 0.86651 0.92013 0.89047 0.89797 0.90273 0.90084 0.92524 0.90141 0.92006 0.92649 0.87187 0.75474 0.91407 0.87965 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.37 71.98 0.67 -3.35 16 2 C 0.14 4.47 2.86 44.24 0.13 4.60 16 3 H 0.09 3.39 7.58 -2.38 -0.02 3.37 16 4 N -0.70 -19.71 4.89 -446.11 -2.18 -21.89 16 5 C 0.52 14.41 6.97 87.66 0.61 15.02 16 6 O -0.58 -20.51 14.87 -3.05 -0.05 -20.55 16 7 C -0.11 -2.09 3.30 -10.82 -0.04 -2.13 16 8 C -0.11 -1.66 6.30 31.69 0.20 -1.46 16 9 C -0.12 -1.37 6.91 31.91 0.22 -1.15 16 10 C -0.12 -1.80 6.83 31.67 0.22 -1.59 16 11 C -0.12 -2.32 6.40 31.32 0.20 -2.12 16 12 C 0.53 20.43 7.47 87.66 0.65 21.08 16 13 O -0.58 -24.57 16.61 -3.04 -0.05 -24.62 16 14 N -0.63 -25.17 3.64 -857.99 -3.12 -28.29 16 15 C 0.11 4.60 8.03 83.18 0.67 5.27 16 16 C 0.22 10.05 1.59 -11.16 -0.02 10.03 16 17 O -0.59 -30.51 13.54 -148.98 -2.02 -32.52 16 18 C -0.55 -26.27 8.69 25.60 0.22 -26.04 16 19 H 0.08 3.59 7.81 -2.91 -0.02 3.57 16 20 C 0.03 1.44 5.40 84.65 0.46 1.90 16 21 N -0.92 -45.82 11.01 21.45 0.24 -45.58 16 22 Si 0.97 38.41 29.54 68.60 2.03 40.44 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 25 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.08 3.43 6.15 83.23 0.51 3.94 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.11 6.34 -2.39 -0.02 2.09 16 29 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.42 10.50 7.78 -92.71 -0.72 9.78 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.03 7.85 -2.38 -0.02 1.01 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.06 1.56 6.39 -2.39 -0.02 1.55 16 40 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.11 4.03 8.10 -2.39 -0.02 4.01 16 42 H 0.39 20.62 6.33 -74.06 -0.47 20.15 16 43 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 44 H 0.10 3.78 8.05 -2.39 -0.02 3.76 16 45 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -60.81 365.76 -0.63 -61.44 By element: Atomic # 1 Polarization: 47.76 SS G_CDS: -0.18 Total: 47.58 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 4.71 Total: 24.00 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -5.07 Total: -95.76 kcal Atomic # 8 Polarization: -75.58 SS G_CDS: -2.11 Total: -77.69 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -60.81 -0.63 -61.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331579891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.594 kcal (2) G-P(sol) polarization free energy of solvation -60.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds